User: Arindam Ghosh

gravatar for Arindam Ghosh
Arindam Ghosh160
Reputation:
160
Status:
Trusted
Location:
India
Website:
https://ag1805x.github...
Twitter:
ag1805x
Last seen:
1 week, 1 day ago
Joined:
3 years, 7 months ago
Email:
a******@outlook.in

I am currently working as a Junior Research Fellow at the Centre of Bioinformatics, University of Allahabad. I hold an undergraduate (B.Sc.) degree in Biotechnology from West Bengal University of Technology, India and a postgraduate (M.Sc.) degree in Bioinformatics from Alagappa University, India. My current research interests include stem cell bioinformatics, RNA-seq data analysis and network biology.

Posts by Arindam Ghosh

<prev • 122 results • page 1 of 13 • next >
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Comment: C: Demultiplexing SRA data
... How to detect if a certain SRA RNA-seq fastq file has been demultiplexed or not? ...
written 4 weeks ago by Arindam Ghosh160
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Comment: C: Can We Compare Two Different Rna-Seq Experiments?
... I am planning for something similar in my work. Would be helpful if you share your experiences. ...
written 11 weeks ago by Arindam Ghosh160
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Comment: C: Combining RNA-seq data
... Is COMBAT sufficient to remove batch effects from this type of study? ...
written 11 weeks ago by Arindam Ghosh160
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Comment: C: Combining the RNAseq datasets
... How did you proceed with this? I may be doing something similar and would like to know your experience. ...
written 11 weeks ago by Arindam Ghosh160
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Comment: C: Can anyone suggest a good tutorial to learn RNA-seq analysis?
... [Informatics for RNA-seq: A web resource for analysis on the cloud][1] [1]: https://github.com/griffithlab/rnaseq_tutorial/wiki ...
written 3 months ago by Arindam Ghosh160
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How to efetch specific attributes from BioSamples?
... I need to extract the sample source for a list of sample ids. I tried using efetch as follows: efetch -db biosample -id SAMN04383980 -format xml | xtract -pattern BioSampleSet -division BioSample -group Attributes -element Attribute The problem here is that there are often more than two attri ...
ncbi xml eutils written 4 months ago by Arindam Ghosh160 • updated 4 months ago by Pierre Lindenbaum120k
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Comment: C: Data selection for RNA-seq data analysis
... I have tried the approach 2 and as you mentioned the overlap is very less but to some extent has biological relevance. One major shortcoming of approach 2 is the number of replicates within each experiment. This now compels me to move towards approach 1. Can you help me with some papers that have u ...
written 4 months ago by Arindam Ghosh160
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Comment: C: What does cluster number in ClusterMaker represent?
... That's my concern. Even in their [example][1] problem in their [paper][2] I saw a similar situation. [1]: https://www.ncbi.nlm.nih.gov/core/lw/2.0/html/tileshop_pmc/tileshop_pmc_inline.html?title=Click%20on%20image%20to%20zoom&p=PMC3&id=2995124_btq596f1.jpg [2]: https://www.ncbi.nlm.n ...
written 4 months ago by Arindam Ghosh160
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What does cluster number in ClusterMaker represent?
... While clustering a network using Community Cluster (GLay) in ClusterMaker it gives a cluster number for each cluster. What does this represent? I Initially thought it to simple numbers to distinguish between two clusters but I saw that the cluster with highest node is at #2 while the other major clu ...
network clustermaker cytoscape clustering written 4 months ago by Arindam Ghosh160 • updated 4 months ago by scooter80
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Comment: C: How to construct GCN?
... But constructing only network with gene expression for single condition will give how the genes are correlated between the samples of a single condition. It won't tell much if any two genes are correlated across conditions. Again, for any given condition the gene expression values should be same ac ...
written 5 months ago by Arindam Ghosh160

Latest awards to Arindam Ghosh

Popular Question 6 weeks ago, created a question with more than 1,000 views. For Non-bonded atoms in PDB
Popular Question 6 weeks ago, created a question with more than 1,000 views. For How to graphically tell if data has been normalized?
Popular Question 3 months ago, created a question with more than 1,000 views. For Non-bonded atoms in PDB
Popular Question 3 months ago, created a question with more than 1,000 views. For Can anyone suggest a good tutorial to learn RNA-seq analysis?
Autobiographer 4 months ago, has more than 80 characters in the information field of the user's profile.
Epic Question 4 months ago, created a question with more than 10,000 views. For C program to find complementary of DNA sequence
Popular Question 5 months ago, created a question with more than 1,000 views. For Non-bonded atoms in PDB
Student 5 months ago, asked a question with at least 3 up-votes. For Can anyone suggest a good tutorial to learn RNA-seq analysis?
Popular Question 7 months ago, created a question with more than 1,000 views. For Non-bonded atoms in PDB
Great Question 7 months ago, created a question with more than 5,000 views. For Can anyone suggest a good tutorial to learn RNA-seq analysis?
Popular Question 7 months ago, created a question with more than 1,000 views. For Non-bonded atoms in PDB
Popular Question 9 months ago, created a question with more than 1,000 views. For Non-bonded atoms in PDB
Centurion 10 months ago, created 100 posts.
Voter 11 months ago, voted more than 100 times.
Popular Question 14 months ago, created a question with more than 1,000 views. For C program to find complementary of DNA sequence
Scholar 15 months ago, created an answer that has been accepted. For A: What is the difference between gene FPKM and transcript FPKM values?
Great Question 16 months ago, created a question with more than 5,000 views. For C program to find complementary of DNA sequence
Supporter 19 months ago, voted at least 25 times.
Popular Question 3.0 years ago, created a question with more than 1,000 views. For C program to find complementary of DNA sequence

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