User: Arindam Ghosh
Arindam Ghosh • 160
- Reputation:
- 160
- Status:
- Trusted
- Location:
- India
- Website:
- https://ag1805x.github...
- Twitter:
- ag1805x
- Last seen:
- 1 week, 1 day ago
- Joined:
- 3 years, 7 months ago
- Email:
- a******@outlook.in
I am currently working as a Junior Research Fellow at the Centre of Bioinformatics, University of Allahabad. I hold an undergraduate (B.Sc.) degree in Biotechnology from West Bengal University of Technology, India and a postgraduate (M.Sc.) degree in Bioinformatics from Alagappa University, India. My current research interests include stem cell bioinformatics, RNA-seq data analysis and network biology.
Posts by Arindam Ghosh
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C: Demultiplexing SRA data
... How to detect if a certain SRA RNA-seq fastq file has been demultiplexed or not? ...
written 4 weeks ago by
Arindam Ghosh • 160
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... I am planning for something similar in my work. Would be helpful if you share your experiences. ...
written 11 weeks ago by
Arindam Ghosh • 160
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C: Combining RNA-seq data
... Is COMBAT sufficient to remove batch effects from this type of study? ...
written 11 weeks ago by
Arindam Ghosh • 160
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C: Combining the RNAseq datasets
... How did you proceed with this? I may be doing something similar and would like to know your experience. ...
written 11 weeks ago by
Arindam Ghosh • 160
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... [Informatics for RNA-seq: A web resource for analysis on the cloud][1]
[1]: https://github.com/griffithlab/rnaseq_tutorial/wiki ...
written 3 months ago by
Arindam Ghosh • 160
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... I need to extract the sample source for a list of sample ids. I tried using efetch as follows:
efetch -db biosample -id SAMN04383980 -format xml | xtract -pattern BioSampleSet -division BioSample -group Attributes -element Attribute
The problem here is that there are often more than two attri ...
written 4 months ago by
Arindam Ghosh • 160
• updated
4 months ago by
Pierre Lindenbaum ♦ 120k
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... I have tried the approach 2 and as you mentioned the overlap is very less but to some extent has biological relevance. One major shortcoming of approach 2 is the number of replicates within each experiment. This now compels me to move towards approach 1.
Can you help me with some papers that have u ...
written 4 months ago by
Arindam Ghosh • 160
0
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... That's my concern. Even in their [example][1] problem in their [paper][2] I saw a similar situation.
[1]: https://www.ncbi.nlm.nih.gov/core/lw/2.0/html/tileshop_pmc/tileshop_pmc_inline.html?title=Click%20on%20image%20to%20zoom&p=PMC3&id=2995124_btq596f1.jpg
[2]: https://www.ncbi.nlm.n ...
written 4 months ago by
Arindam Ghosh • 160
2
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1
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209
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... While clustering a network using Community Cluster (GLay) in ClusterMaker it gives a cluster number for each cluster. What does this represent?
I Initially thought it to simple numbers to distinguish between two clusters but I saw that the cluster with highest node is at #2 while the other major clu ...
written 4 months ago by
Arindam Ghosh • 160
• updated
4 months ago by
scooter • 80
0
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308
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Comment:
C: How to construct GCN?
... But constructing only network with gene expression for single condition will give how the genes are correlated between the samples of a single condition. It won't tell much if any two genes are correlated across conditions.
Again, for any given condition the gene expression values should be same ac ...
written 5 months ago by
Arindam Ghosh • 160
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6 weeks ago,
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For Non-bonded atoms in PDB
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For How to graphically tell if data has been normalized?
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For Can anyone suggest a good tutorial to learn RNA-seq analysis?
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For C program to find complementary of DNA sequence
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created a question with more than 1,000 views.
For Non-bonded atoms in PDB
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For Can anyone suggest a good tutorial to learn RNA-seq analysis?
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7 months ago,
created a question with more than 1,000 views.
For Non-bonded atoms in PDB
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For Can anyone suggest a good tutorial to learn RNA-seq analysis?
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created a question with more than 1,000 views.
For Non-bonded atoms in PDB
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created a question with more than 1,000 views.
For Non-bonded atoms in PDB
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For C program to find complementary of DNA sequence
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For C program to find complementary of DNA sequence
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For C program to find complementary of DNA sequence
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