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161
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Tools for network alignement
graph
network
R
netcom
igraph
updated 8 weeks ago by
Ram
43k • written 8 weeks ago by
Arindam Ghosh
▴ 510
1
vote
1
reply
490
views
Network cross-validation
wgcna
RNASeq
Network
CV
updated 9 months ago by
LChart
3.9k • written 10 months ago by
Arindam Ghosh
▴ 510
0
votes
1
reply
808
views
Comment:
Comment: Log fold change from rlog
17 months ago by
Arindam Ghosh
▴ 510
3
votes
3
replies
808
views
Log fold change from rlog
logarithms
R
deseq
updated 17 months ago by
ATpoint
81k • written 17 months ago by
Arindam Ghosh
▴ 510
0
votes
0
replies
2.4k
views
Answer:
Answer: From Bismark to methylkit, which file is better to use?
2.6 years ago by
Arindam Ghosh
▴ 510
0
votes
1
reply
3.6k
views
Comment:
Comment: Difference in Bismark output methylation call files and coverage files
2.6 years ago by
Arindam Ghosh
▴ 510
1
vote
1
reply
926
views
RRBS data analysis using Bismark and methylkit
RRBS
methylkit
Bismark
WGBS
updated 2.6 years ago by
Papyrus
★ 2.9k • written 2.6 years ago by
Arindam Ghosh
▴ 510
0
votes
0
replies
3.4k
views
Comment:
Comment: Bismark rrbs data analysis
2.6 years ago by
Arindam Ghosh
▴ 510
0
votes
1
reply
2.6k
views
Comment:
Comment: directionality of RRBS
2.7 years ago by
Arindam Ghosh
▴ 510
0
votes
1
reply
4.1k
views
Comment:
Comment: GC content in bilsulfite converted library
2.7 years ago by
Arindam Ghosh
▴ 510
1
vote
1
reply
5.0k
views
Comment:
Comment: Rrbs Is It Different From Bisulfite Seq
2.7 years ago by
Arindam Ghosh
▴ 510
0
votes
1
reply
779
views
Comment:
Comment: Contigs and scaffold in reference genome
2.7 years ago by
Arindam Ghosh
▴ 510
2
votes
3
replies
779
views
Contigs and scaffold in reference genome
BWA
Ensembl
Genome
Reference
HiSat
NCBI
updated 2.7 years ago by
GenoMax
140k • written 2.7 years ago by
Arindam Ghosh
▴ 510
0
votes
1
reply
18k
views
Comment:
Comment: BEDOPS gtf2bed conversion error with Ensembl GTF
2.7 years ago by
Arindam Ghosh
▴ 510
0
votes
0
replies
4.9k
views
Comment:
Comment: How can I get .bed file that have unique Entrez gene id (or symbol) for deeptool
2.7 years ago by
Arindam Ghosh
▴ 510
0
votes
0
replies
676
views
Read trimming in BS-Seq
Methylation
BS-Seq
Bismark
WGBS
2.8 years ago by
Arindam Ghosh
▴ 510
0
votes
0
replies
1.3k
views
Bismark to MethylKit
methylkit
bismark
bsseq
2.9 years ago by
Arindam Ghosh
▴ 510
1
vote
1
reply
938
views
Pathway network
Reactome
Pathway
cytoscape
KEGG
igraph
updated 2.9 years ago by
Jean-Karim Heriche
27k • written 2.9 years ago by
Arindam Ghosh
▴ 510
0
votes
0
replies
3.4k
views
Comment:
Comment: What is the difference between deferentially expressed genes and deferentially
2.9 years ago by
Arindam Ghosh
▴ 510
0
votes
0
replies
440
views
Is there a limit on the number of query in cir_query()?
R
SMILES
webchem
2.9 years ago by
Arindam Ghosh
▴ 510
0
votes
0
replies
5.5k
views
Comment:
Comment: Multiple Hits and Unique Mapped Reads
3.0 years ago by
Arindam Ghosh
▴ 510
0
votes
0
replies
5.5k
views
Comment:
C: Open Targets and programmatic access
3.0 years ago by
Arindam Ghosh
▴ 510
0
votes
0
replies
2.0k
views
HiSat2 vs BowTie2 for mapping miRNA-seq reads
miRNA-Seq
Hisat2
Bowtie
updated 3.3 years ago by
Biostar
20 • written 3.7 years ago by
Arindam Ghosh
▴ 510
57
votes
22
replies
28k
views
7 follow
Batch correction in DESeq2
DESeq2
Batch Effect
Combat
updated 12 months ago by
Kevin Blighe
87k • written 4.5 years ago by
Arindam Ghosh
▴ 510
0
votes
0
replies
2.5k
views
Comment:
C: miRNAs interaction networks analysis
3.6 years ago by
Arindam Ghosh
▴ 510
0
votes
1
reply
23k
views
Comment:
C: htseq-counts output merge into one matrix ??
3.6 years ago by
Arindam Ghosh
▴ 510
0
votes
1
reply
5.6k
views
Comment:
C: How to find p-value of the modules in WGCNA?
3.7 years ago by
Arindam Ghosh
▴ 510
0
votes
1
reply
5.6k
views
Comment:
C: How to find p-value of the modules in WGCNA?
3.7 years ago by
Arindam Ghosh
▴ 510
0
votes
1
reply
5.6k
views
Comment:
C: How to find p-value of the modules in WGCNA?
3.7 years ago by
Arindam Ghosh
▴ 510
0
votes
1
reply
10k
views
Comment:
C: featureCounts for paired bam files and dealing with multimapping reads?
3.7 years ago by
Arindam Ghosh
▴ 510
0
votes
0
replies
2.6k
views
Comment:
C: Full GTF file vs Subset GTF file
3.7 years ago by
Arindam Ghosh
▴ 510
0
votes
1
reply
2.6k
views
Comment:
C: Full GTF file vs Subset GTF file
3.7 years ago by
Arindam Ghosh
▴ 510
0
votes
0
replies
2.6k
views
Comment:
C: Full GTF file vs Subset GTF file
3.7 years ago by
Arindam Ghosh
▴ 510
0
votes
1
reply
2.6k
views
Comment:
C: Full GTF file vs Subset GTF file
3.7 years ago by
Arindam Ghosh
▴ 510
2
votes
8
replies
2.6k
views
Full GTF file vs Subset GTF file
featurecounts
RNA-Seq
miRNA-seq
Ensembl
updated 3.7 years ago by
Shalu Jhanwar
▴ 520 • written 3.7 years ago by
Arindam Ghosh
▴ 510
1
vote
0
replies
1.1k
views
Answer:
A: DESeq2 for Differential gene expression
3.7 years ago by
Arindam Ghosh
▴ 510
0
votes
0
replies
2.7k
views
Comment:
C: LncRNA Differential Expression and Analysis of lncRNA and mRNA co-expression.
3.7 years ago by
Arindam Ghosh
▴ 510
0
votes
0
replies
3.4k
views
Answer:
A: FastQC & trimming - RNA seq data
3.7 years ago by
Arindam Ghosh
▴ 510
0
votes
0
replies
5.6k
views
Comment:
C: GO and KEGG from DESeq2 counts
3.7 years ago by
Arindam Ghosh
▴ 510
0
votes
1
reply
1.8k
views
Comment:
C: Error in reading expression matrix
3.7 years ago by
Arindam Ghosh
▴ 510
0
votes
2
replies
1.5k
views
Comment:
C: hisat2 mm10 low transcriptome mapping rate and low uniquely mapping rate
3.7 years ago by
Arindam Ghosh
▴ 510
0
votes
1
reply
1.5k
views
Answer:
A: hisat2 mm10 low transcriptome mapping rate and low uniquely mapping rate
3.7 years ago by
Arindam Ghosh
▴ 510
0
votes
1
reply
9.8k
views
Comment:
C: GTF/GFF for non-coding RNA
3.7 years ago by
Arindam Ghosh
▴ 510
6
votes
1
reply
28k
views
Comment:
C: Batch correction in DESeq2
3.7 years ago by
Arindam Ghosh
▴ 510
0
votes
0
replies
3.2k
views
Comment:
C: miRNA-seq Trimmomatic adapter file
3.7 years ago by
Arindam Ghosh
▴ 510
0
votes
0
replies
4.7k
views
Comment:
C: microRNA- sequencing analysis
3.7 years ago by
Arindam Ghosh
▴ 510
0
votes
1
reply
7.2k
views
Comment:
C: miRNA differential expression
3.7 years ago by
Arindam Ghosh
▴ 510
0
votes
1
reply
7.2k
views
Comment:
C: miRNA differential expression
3.8 years ago by
Arindam Ghosh
▴ 510
0
votes
0
replies
1.2k
views
Comment:
C: Annotation for miRNA-seq data analysis
3.8 years ago by
Arindam Ghosh
▴ 510
2
votes
2
replies
1.2k
views
Annotation for miRNA-seq data analysis
mirna
hisat
ensembl
RNA-Seq
Assembly
updated 3.8 years ago by
Astrid_Ensembl
▴ 330 • written 3.8 years ago by
Arindam Ghosh
▴ 510
222 results • Page
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