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472
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Umbrella pathways in KEGG
KEGG R
updated 5 weeks ago by 3.3k • written 5 weeks ago by ▴ 550
0
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0
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452
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Tools for network alignement
graph network R netcom igraph
updated 16 months ago by 45k • written 16 months ago by ▴ 550
1
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1
reply
828
views
Network cross-validation
wgcna RNASeq Network CV
updated 2.0 years ago by 5.0k • written 2.0 years ago by ▴ 550
0
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1
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1.2k
views
Comment: Comment: Log fold change from rlog
2.7 years ago by Arindam Ghosh ▴ 550
3
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3
replies
1.2k
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Log fold change from rlog
logarithms R deseq
updated 2.7 years ago by 88k • written 2.7 years ago by ▴ 550
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0
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3.4k
views
Answer: Answer: From Bismark to methylkit, which file is better to use?
3.8 years ago by Arindam Ghosh ▴ 550
0
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1
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6.0k
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Comment: Comment: Difference in Bismark output methylation call files and coverage files
3.8 years ago by Arindam Ghosh ▴ 550
1
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1
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1.3k
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RRBS data analysis using Bismark and methylkit
RRBS methylkit Bismark WGBS
updated 3.8 years ago by ★ 3.1k • written 3.8 years ago by ▴ 550
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0
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4.5k
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Comment: Comment: Bismark rrbs data analysis
3.9 years ago by Arindam Ghosh ▴ 550
0
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1
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3.8k
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Comment: Comment: directionality of RRBS
3.9 years ago by Arindam Ghosh ▴ 550
0
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1
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5.0k
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Comment: Comment: GC content in bilsulfite converted library
3.9 years ago by Arindam Ghosh ▴ 550
1
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1
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5.9k
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Comment: Comment: Rrbs Is It Different From Bisulfite Seq
3.9 years ago by Arindam Ghosh ▴ 550
0
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1
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1.2k
views
Comment: Comment: Contigs and scaffold in reference genome
3.9 years ago by Arindam Ghosh ▴ 550
2
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3
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1.2k
views
Contigs and scaffold in reference genome
BWA Ensembl Genome Reference HiSat NCBI
updated 3.9 years ago by 152k • written 3.9 years ago by ▴ 550
0
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1
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21k
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Comment: Comment: BEDOPS gtf2bed conversion error with Ensembl GTF
3.9 years ago by Arindam Ghosh ▴ 550
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0
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5.9k
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Comment: Comment: How can I get .bed file that have unique Entrez gene id (or symbol) for deeptool
3.9 years ago by Arindam Ghosh ▴ 550
0
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0
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944
views
Read trimming in BS-Seq
Methylation BS-Seq Bismark WGBS
4.0 years ago by Arindam Ghosh ▴ 550
0
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0
replies
1.9k
views
Bismark to MethylKit
methylkit bismark bsseq
4.1 years ago by Arindam Ghosh ▴ 550
1
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1
reply
1.3k
views
Pathway network
Reactome Pathway cytoscape KEGG igraph
updated 4.1 years ago by 27k • written 4.1 years ago by ▴ 550
0
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0
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5.4k
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Comment: Comment: What is the difference between deferentially expressed genes and deferentially
4.1 years ago by Arindam Ghosh ▴ 550
0
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0
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631
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Is there a limit on the number of query in cir_query()?
R SMILES webchem
4.1 years ago by Arindam Ghosh ▴ 550
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0
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6.4k
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Comment: Comment: Multiple Hits and Unique Mapped Reads
4.2 years ago by Arindam Ghosh ▴ 550
0
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0
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6.6k
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Comment: C: Open Targets and programmatic access
4.3 years ago by Arindam Ghosh ▴ 550
0
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0
replies
2.4k
views
HiSat2 vs BowTie2 for mapping miRNA-seq reads
miRNA-Seq Hisat2 Bowtie
updated 4.6 years ago by 20 • written 5.0 years ago by ▴ 550
64
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22
replies
37k
views
7 follow
Batch correction in DESeq2
Combat DESeq2 Batch-Effect
updated 14 months ago by 45k • written 5.7 years ago by ▴ 550
0
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0
replies
3.0k
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Comment: C: miRNAs interaction networks analysis
4.8 years ago by Arindam Ghosh ▴ 550
0
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1
reply
25k
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Comment: C: htseq-counts output merge into one matrix ??
4.9 years ago by Arindam Ghosh ▴ 550
0
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1
reply
7.3k
views
Comment: C: How to find p-value of the modules in WGCNA?
4.9 years ago by Arindam Ghosh ▴ 550
0
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1
reply
7.3k
views
Comment: C: How to find p-value of the modules in WGCNA?
4.9 years ago by Arindam Ghosh ▴ 550
0
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1
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7.3k
views
Comment: C: How to find p-value of the modules in WGCNA?
4.9 years ago by Arindam Ghosh ▴ 550
0
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1
reply
11k
views
Comment: C: featureCounts for paired bam files and dealing with multimapping reads?
4.9 years ago by Arindam Ghosh ▴ 550
0
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0
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3.9k
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Comment: C: Full GTF file vs Subset GTF file
4.9 years ago by Arindam Ghosh ▴ 550
0
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1
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3.9k
views
Comment: C: Full GTF file vs Subset GTF file
4.9 years ago by Arindam Ghosh ▴ 550
0
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0
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3.9k
views
Comment: C: Full GTF file vs Subset GTF file
4.9 years ago by Arindam Ghosh ▴ 550
0
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1
reply
3.9k
views
Comment: C: Full GTF file vs Subset GTF file
4.9 years ago by Arindam Ghosh ▴ 550
2
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8
replies
3.9k
views
Full GTF file vs Subset GTF file
featurecounts RNA-Seq miRNA-seq Ensembl
updated 4.9 years ago by ▴ 540 • written 4.9 years ago by ▴ 550
1
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0
replies
1.6k
views
Answer: A: DESeq2 for Differential gene expression
4.9 years ago by Arindam Ghosh ▴ 550
0
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0
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3.7k
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Comment: C: LncRNA Differential Expression and Analysis of lncRNA and mRNA co-expression.
4.9 years ago by Arindam Ghosh ▴ 550
0
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0
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5.5k
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Answer: A: FastQC & trimming - RNA seq data
4.9 years ago by Arindam Ghosh ▴ 550
0
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0
replies
7.3k
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Comment: C: GO and KEGG from DESeq2 counts
4.9 years ago by Arindam Ghosh ▴ 550
0
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1
reply
2.5k
views
Comment: C: Error in reading expression matrix
4.9 years ago by Arindam Ghosh ▴ 550
0
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2
replies
2.0k
views
Comment: C: hisat2 mm10 low transcriptome mapping rate and low uniquely mapping rate
4.9 years ago by Arindam Ghosh ▴ 550
0
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1
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2.0k
views
Answer: A: hisat2 mm10 low transcriptome mapping rate and low uniquely mapping rate
4.9 years ago by Arindam Ghosh ▴ 550
0
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1
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12k
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Comment: C: GTF/GFF for non-coding RNA
4.9 years ago by Arindam Ghosh ▴ 550
9
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1
reply
37k
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Comment: C: Batch correction in DESeq2
5.0 years ago by Arindam Ghosh ▴ 550
0
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0
replies
3.9k
views
Comment: C: miRNA-seq Trimmomatic adapter file
5.0 years ago by Arindam Ghosh ▴ 550
0
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0
replies
5.6k
views
Comment: C: microRNA- sequencing analysis
5.0 years ago by Arindam Ghosh ▴ 550
0
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1
reply
9.7k
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Comment: C: miRNA differential expression
5.0 years ago by Arindam Ghosh ▴ 550
0
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1
reply
9.7k
views
Comment: C: miRNA differential expression
5.0 years ago by Arindam Ghosh ▴ 550
0
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0
replies
1.7k
views
Comment: C: Annotation for miRNA-seq data analysis
5.0 years ago by Arindam Ghosh ▴ 550
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