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User: Shalu Jhanwar

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Shalu Jhanwar • 350
Reputation:
350
Status:
Trusted
Location:
Switzerland
Last seen:
1 week ago
Joined:
2 months, 2 weeks ago
Email:
s**************@gmail.com

Posts by Shalu Jhanwar

<prev • 46 results • page 1 of 5 • next >
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Answer: A: Custom reference genome for hybride mouse
... You can directly download the FASTA sequences from C57BL_6NJ_v1 assembly for *Mus musculus* from [here][1] under "Chromosome" tab. After downloading, you can concatenate all the FASTA files into one to generate a reference fasta for alignment of RNA-seq reads. You can use below code for creating sin ...
written 14 days ago by Shalu Jhanwar • 350
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Answer: A: Question about annotation file
... Here is the [link][1] to download genome annotations for mammalian vertebrate from NCBI. Hope this helps! [1]: https://ftp.ncbi.nih.gov/genomes/refseq/vertebrate_mammalian/ ...
written 14 days ago by Shalu Jhanwar • 350
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Comment: A: The Biostar Handbook. A bioinformatics e-book for beginners.
... @Istvan many congratulations for this great resource. Wishing you a great success. ...
written 16 days ago by Shalu Jhanwar • 350
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Comment: C: Monoallelic expression datasets (high-throughput sequencing)
... It's strange, I'm also getting zero values. I think it's better to directly ask [here][1] if it's due to some technical errors on their site. [1]: https://mae.hms.harvard.edu/aboutdb.php ...
written 19 days ago by Shalu Jhanwar • 350
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Answer: A: Monoallelic expression datasets (high-throughput sequencing)
... Have a look at [dbMAE][1], a database of autosomal monoallelic expression. [1]: https://academic.oup.com/nar/article/44/D1/D753/2502615 ...
written 20 days ago by Shalu Jhanwar • 350
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Comment: C: How to put CutAdapt in path for running TrimGalore?
... I'd suggest having a look at an example [here][1]. You may follow the steps below: 1. Get the path of Cutadapt where it is installed by the command `which cutadapt` 2. Copy the path that you get from Step1 and add it to your `~/.bashrc` file as export PATH=$PATH:cutadapt_installation_path ...
written 21 days ago by Shalu Jhanwar • 350
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Answer: A: How to put CutAdapt in path for running TrimGalore?
... I'd suggest the simplest is to make the `Cutadapt` path globally accessible by including it in your `~/.bashrc`. Then `TrimGalore` will automatically find it within the path and run successfully. Hope this helps! ...
written 21 days ago by Shalu Jhanwar • 350
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Answer: A: How to add column to table with awk
... Yes, it's possible to append a column in the using the code below: awk -v s=1 '{print $0,$(NF)+s}' test Where test file is NC_001960.1 1067 NC_001960.1 1068 NC_001960.1 1069 NC_001960.1 1133 The `output` of the `code` is: NC_001960.1 1067 1068 NC_001960.1 1068 1069 NC_001960.1 1069 10 ...
written 21 days ago by Shalu Jhanwar • 350
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Comment: C: FireBrowse TCGA data files
... Yeah, that's true, I edited it in the post :) ...
written 21 days ago by Shalu Jhanwar • 350
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Comment: C: FireBrowse TCGA data files
... Totally agree, so I change it to the actual link. Thanks for the reminder. ...
written 21 days ago by Shalu Jhanwar • 350

Latest awards to Shalu Jhanwar

Scholar 16 days ago, created an answer that has been accepted. For A: Failed to merge BAM files
Scholar 21 days ago, created an answer that has been accepted. For A: Failed to merge BAM files
Scholar 22 days ago, created an answer that has been accepted. For A: Failed to merge BAM files
Teacher 23 days ago, created an answer with at least 3 up-votes. For A: Whole Genome Sequencing Data Annotation
Scholar 26 days ago, created an answer that has been accepted. For A: Failed to merge BAM files
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