User: Shalu Jhanwar

gravatar for Shalu Jhanwar
Shalu Jhanwar350
Reputation:
350
Status:
Trusted
Location:
Switzerland
Last seen:
1 week ago
Joined:
2 months, 2 weeks ago
Email:
s**************@gmail.com

Posts by Shalu Jhanwar

<prev • 46 results • page 1 of 5 • next >
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Answer: A: Custom reference genome for hybride mouse
... You can directly download the FASTA sequences from C57BL_6NJ_v1 assembly for *Mus musculus* from [here][1] under "Chromosome" tab. After downloading, you can concatenate all the FASTA files into one to generate a reference fasta for alignment of RNA-seq reads. You can use below code for creating sin ...
written 14 days ago by Shalu Jhanwar350
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Answer: A: Question about annotation file
... Here is the [link][1] to download genome annotations for mammalian vertebrate from NCBI. Hope this helps! [1]: https://ftp.ncbi.nih.gov/genomes/refseq/vertebrate_mammalian/ ...
written 14 days ago by Shalu Jhanwar350
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Comment: A: The Biostar Handbook. A bioinformatics e-book for beginners.
... @Istvan many congratulations for this great resource. Wishing you a great success. ...
written 16 days ago by Shalu Jhanwar350
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Comment: C: Monoallelic expression datasets (high-throughput sequencing)
... It's strange, I'm also getting zero values. I think it's better to directly ask [here][1] if it's due to some technical errors on their site. [1]: https://mae.hms.harvard.edu/aboutdb.php ...
written 19 days ago by Shalu Jhanwar350
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Answer: A: Monoallelic expression datasets (high-throughput sequencing)
... Have a look at [dbMAE][1], a database of autosomal monoallelic expression. [1]: https://academic.oup.com/nar/article/44/D1/D753/2502615 ...
written 20 days ago by Shalu Jhanwar350
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Comment: C: How to put CutAdapt in path for running TrimGalore?
... I'd suggest having a look at an example [here][1]. You may follow the steps below: 1. Get the path of Cutadapt where it is installed by the command `which cutadapt` 2. Copy the path that you get from Step1 and add it to your `~/.bashrc` file as export PATH=$PATH:cutadapt_installation_path ...
written 21 days ago by Shalu Jhanwar350
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Answer: A: How to put CutAdapt in path for running TrimGalore?
... I'd suggest the simplest is to make the `Cutadapt` path globally accessible by including it in your `~/.bashrc`. Then `TrimGalore` will automatically find it within the path and run successfully. Hope this helps! ...
written 21 days ago by Shalu Jhanwar350
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Answer: A: How to add column to table with awk
... Yes, it's possible to append a column in the using the code below: awk -v s=1 '{print $0,$(NF)+s}' test Where test file is NC_001960.1 1067 NC_001960.1 1068 NC_001960.1 1069 NC_001960.1 1133 The `output` of the `code` is: NC_001960.1 1067 1068 NC_001960.1 1068 1069 NC_001960.1 1069 10 ...
written 21 days ago by Shalu Jhanwar350
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Comment: C: FireBrowse TCGA data files
... Yeah, that's true, I edited it in the post :) ...
written 21 days ago by Shalu Jhanwar350
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Comment: C: FireBrowse TCGA data files
... Totally agree, so I change it to the actual link. Thanks for the reminder. ...
written 21 days ago by Shalu Jhanwar350

Latest awards to Shalu Jhanwar

Scholar 16 days ago, created an answer that has been accepted. For A: Failed to merge BAM files
Scholar 21 days ago, created an answer that has been accepted. For A: Failed to merge BAM files
Scholar 22 days ago, created an answer that has been accepted. For A: Failed to merge BAM files
Teacher 23 days ago, created an answer with at least 3 up-votes. For A: Whole Genome Sequencing Data Annotation
Scholar 26 days ago, created an answer that has been accepted. For A: Failed to merge BAM files

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