User: kanika.151

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kanika.15180
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Location:
Italy
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2 weeks, 2 days ago
Joined:
4 years, 3 months ago
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Posts by kanika.151

<prev • 65 results • page 1 of 7 • next >
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Comment: C: Error ecountered while running conifer with demo data set
... Can you share the command that you are using? ...
written 16 days ago by kanika.15180
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Comment: C: Error ecountered while running conifer with demo data set
... hdf5 1.8 can be found at this location: https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.8/ ...
written 16 days ago by kanika.15180
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Comment: C: Error ecountered while running conifer with demo data set
... Apparently, hdf5 1.8 is not supported with pytables 2.4.0 when I try to install pytables with hdf5 1.8 it says not supported. Did you face the same issue? ...
written 16 days ago by kanika.15180
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Answer: A: tables.exceptions.NoSuchNodeError: group ``/`` does not have a child named ``sam
... Hi, Can I ask you the version of PyTables that you have installed for using Conifer? ...
written 17 days ago by kanika.15180
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Comment: C: Error ecountered while running conifer with demo data set
... Hello! I tried your method and it worked for all the chromosomes except 'chr Y' in the sample data set but that is understandable. Note: I had to change the conifer.py and conifer_functions.py making it compatible with PyTables 3.x. Also, I didn't do any changes with the versions of other tools t ...
written 23 days ago by kanika.15180
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Comment: C: 1 base pair to 'x' byte conversion
... Thank you. I had taken read length into consideration as the data is paired-end. I will do as you all have suggested. Thanks again! :) ...
written 7 weeks ago by kanika.15180
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Comment: A: 1 base pair to 'x' byte conversion
... Hello All, What do you folks think of this article? https://bitesizebio.com/8378/how-much-information-is-stored-in-the-human-genome/ Do you think this conversion from this article can be used to give an estimation? > 6×10^9 base pairs/diploid genome x 1 byte/4 base pairs = 1.5×10^9 bytes or 1. ...
written 7 weeks ago by kanika.15180
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Answer: A: GATK Indelrealignment Problem : The input is truncated?
... I would do sam to bam conversion again or repeat the last step again which created your input.bam. ...
written 7 weeks ago by kanika.15180
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1 base pair to 'x' byte conversion
... Hello all, Does anyone know the base pair to byte conversion? I was recently asked that if each sample has 'y' million reads do you know how space it would occupy in our cluster? How would you answer it? ...
cluster base pairs byte fastq file conversion written 7 weeks ago by kanika.15180
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Answer: A: Annotating dbnsfp by SnpSift on a cluster
... Done! Forgot to index each file as Pablo said. `tabix -s 1 -b 2 -e 2 "$file"` Thanks. ...
written 3 months ago by kanika.15180

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Scholar 12 weeks ago, created an answer that has been accepted. For A: Extract Dendrogram Information From Heatmap Generated By Heatmap.2
Supporter 11 months ago, voted at least 25 times.
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