User: kanika.151

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kanika.15160
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Posts by kanika.151

<prev • 46 results • page 1 of 5 • next >
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Answer: A: venn plot data?
... ![venn][1] Highlighting only 4 of them in your venn diagram. venn("10000, 01000, 00100, 00010") [1]: http://oi63.tinypic.com/imqb2g.jpg ...
written 12 days ago by kanika.15160 • updated 12 days ago by RamRS21k
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Answer: A: venn plot data?
... I hope this helps: https://stackoverflow.com/questions/37239128/how-to-put-comma-in-large-number-of-venndiagram http://bioinfogp.cnb.csic.es/tools/venny/index2.0.2.html An example code: where d is your data-frame p=draw.triple.venn( area1 = nrow(subset(d, d[,1] == 1)), area2 ...
written 12 days ago by kanika.15160 • updated 12 days ago by RamRS21k
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Comment: C: Vcf Sort According To Order Of The Reference File
... Really, helpful! Kewl trick! ...
written 27 days ago by kanika.15160
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Answer: A: RNA seq NGS data analysis
... What do you have in your out directory? Your data seems to be downloaded from SRA website and in their description they talk about the data being PE or SE? where PE stands for Paired end and SE stands for single end data. your SRR643880.fastq can be left or right fastq files for PE data. If that i ...
written 3.0 years ago by kanika.15160
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Answer: A: Tophat2 Reporting output tracks failed
... This error I got when my disk was 97% full so, you might have to make some space and make sure there are not any other jobs running which utilize a lot of RAM. ...
written 3.0 years ago by kanika.15160
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Answer: A: RNA seq NGS data analysis
... Can you please write the command you gave for creating bowtie index? Is it a single end data or paired end data? Also, make sure that when you are running TopHat2 on your server you have enough memory available and space available. It can also be that the tmp files created had nothing inside it as ...
written 3.0 years ago by kanika.15160
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Comment: C: Create GFF from de novo assembly to input on htseq-counts
... Hello Devon, I did *De novo* transcriptome assemblies ---> Kallisto/Sailish index ---> Kallisto/Sailfish quantification ---> EBSeq, NOISeq and edgeR To find differentially expressed transcripts... Is this okay? ...
written 3.0 years ago by kanika.15160
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Answer: A: SOAP denovo trans
... I don't know how to get that number actually.. ...
written 3.1 years ago by kanika.15160
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Answer: A: SOAP denovo trans
... My transcriptome assembly reported it to be 1.6 ...
written 3.1 years ago by kanika.15160
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Answer: A: How To Use Rsem With Soapdenovo-Trans
... How about Salmon and Kallisto? ...
written 3.2 years ago by kanika.15160

Latest awards to kanika.151

Supporter 27 days ago, voted at least 25 times.
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Popular Question 3.0 years ago, created a question with more than 1,000 views. For RNA-Seq Analysis: To sort or not to Sort?

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