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Answer: Answer: UMI RNASeq data analysis
19 days ago by kanika.151 ▴ 130
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431
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Comment: Comment: Low mapping rate due to rRNA
27 days ago by kanika.151 ▴ 130
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1
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384
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Comment: Comment: About Whole Exome Sequencing analysis
28 days ago by kanika.151 ▴ 130
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207
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Answer: Answer: How to find Polygenic Risk Scores?
28 days ago by kanika.151 ▴ 130
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264
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Answer: Answer: Extract R1 and R2 from sam file generated by bowtie2
28 days ago by kanika.151 ▴ 130
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101
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GnomAD subset vcf files
exac gnomad population vcf subset
28 days ago by kanika.151 ▴ 130
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2.3k
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Answer: Answer: Some questions about call variants for mtDNA using GATK HaplotypeCaller
8 weeks ago by kanika.151 ▴ 130
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3.1k
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Answer: Answer: Read Counts from miRDeep2 for posterior DE analysis
7 months ago by kanika.151 ▴ 130
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0
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2.1k
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Answer: Answer: How to generate the contigs ploidy priors table (yeast) for GATK DetermineGermli
7 months ago by kanika.151 ▴ 130
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7.0k
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Comment: Comment: Relatedness vs relatedness2 from vcftools give different results
9 months ago by kanika.151 ▴ 130
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935
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Comment: Comment: Using wildcards in function in rules
13 months ago by kanika.151 ▴ 130
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1
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935
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Comment: Comment: Using wildcards in function in rules
13 months ago by kanika.151 ▴ 130
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1
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935
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Comment: Comment: Using wildcards in function in rules
13 months ago by kanika.151 ▴ 130
0
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1
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935
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Comment: Comment: Using wildcards in function in rules
13 months ago by kanika.151 ▴ 130
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1
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935
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Answer: Answer: Using wildcards in function in rules
13 months ago by kanika.151 ▴ 130
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2
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504
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Answer: Answer: Snakemake error
13 months ago by kanika.151 ▴ 130
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0
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4.1k
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Answer: Answer: Difficulty filtering VCF file with vcftools
13 months ago by kanika.151 ▴ 130
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3.7k
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Comment: Comment: GATK DepthOfCoverage: 'total coverage' and 'mean coverage' meaning
13 months ago by kanika.151 ▴ 130
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0
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3.7k
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Comment: Comment: GATK DepthOfCoverage: 'total coverage' and 'mean coverage' meaning
13 months ago by kanika.151 ▴ 130
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0
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1.7k
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Comment: Comment: gene annotation with dbNSFP_gene
15 months ago by kanika.151 ▴ 130
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0
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2.3k
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Answer: A: Suggest vcf filtered parameter for gatk VariantFiltration
15 months ago by kanika.151 ▴ 130
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0
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2.3k
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Comment: C: counting after aligning miRNA reads to miRBase mature miRNA instead of reference
16 months ago by kanika.151 ▴ 130
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1.7k
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Comment: C: counts reads for miRNA mapped againt mirbase
16 months ago by kanika.151 ▴ 130
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1
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2.3k
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Answer: A: counting after aligning miRNA reads to miRBase mature miRNA instead of reference
16 months ago by kanika.151 ▴ 130
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1
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639
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Comment: C: Non-coding region of WGS
17 months ago by kanika.151 ▴ 130
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1
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639
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Comment: C: Non-coding region of WGS
17 months ago by kanika.151 ▴ 130
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1.1k
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Answer: A: Which VCF's to use for BQSR in GATK
17 months ago by kanika.151 ▴ 130
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6
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633
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Alignment in WES
trimmomatic alignment WES exome sequencing
updated 18 months ago by 20 • written 19 months ago by ▴ 130
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1
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633
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Comment: C: Alignment in WES
19 months ago by kanika.151 ▴ 130
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1
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633
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Comment: C: Alignment in WES
19 months ago by kanika.151 ▴ 130
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1
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2.0k
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Answer: A: featureCounts with pseudobam
2.2 years ago by kanika.151 ▴ 130
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0
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3.6k
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Comment: C: Error ecountered while running conifer with demo data set
2.4 years ago by kanika.151 ▴ 130
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0
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3.6k
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Comment: C: Error ecountered while running conifer with demo data set
2.4 years ago by kanika.151 ▴ 130
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0
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3.6k
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Comment: C: Error ecountered while running conifer with demo data set
2.4 years ago by kanika.151 ▴ 130
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0
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1.4k
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Answer: A: tables.exceptions.NoSuchNodeError: group ``/`` does not have a child named ``sam
2.4 years ago by kanika.151 ▴ 130
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0
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3.6k
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Comment: C: Error ecountered while running conifer with demo data set
2.4 years ago by kanika.151 ▴ 130
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0
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1.7k
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Comment: C: 1 base pair to 'x' byte conversion
2.5 years ago by kanika.151 ▴ 130
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1
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1.7k
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Comment: A: 1 base pair to 'x' byte conversion
2.5 years ago by kanika.151 ▴ 130
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6
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1.7k
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1 base pair to 'x' byte conversion
fastq file cluster conversion base pairs byte
2.5 years ago by kanika.151 ▴ 130
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0
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382
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Answer: A: GATK Indelrealignment Problem : The input is truncated?
2.5 years ago by kanika.151 ▴ 130
1
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0
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18k
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Answer: A: Extract Dendrogram Information From Heatmap Generated By Heatmap.2
updated 2.5 years ago by 36k • written 6.5 years ago by ▴ 130
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1
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2.9k
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Comment: C: featureCounts segmentation fault, Is there any solution yet ?
updated 2.5 years ago by 36k • written 6.5 years ago by ▴ 130
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0
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2.5k
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Answer: A: Trinity predicting more number of genes?
updated 2.5 years ago by 36k • written 6.5 years ago by ▴ 130
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0
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2.5k
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Comment: C: Trinity predicting more number of genes?
updated 2.5 years ago by 36k • written 6.5 years ago by ▴ 130
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1
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2.9k
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Comment: C: featureCounts segmentation fault, Is there any solution yet ?
updated 2.6 years ago by 36k • written 6.5 years ago by ▴ 130
1
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0
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7.2k
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Comment: C: htseq-count cannot find pysam
updated 2.6 years ago by 36k • written 6.6 years ago by ▴ 130
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0
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9.1k
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Comment: C: Converting PDBQT output to PDB in VINA
updated 2.6 years ago by 36k • written 6.6 years ago by ▴ 130
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0
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2.8k
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Comment: C: Which one is better and Why? edgeR DESeq2
updated 2.6 years ago by 36k • written 6.6 years ago by ▴ 130
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0
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5.1k
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Comment: C: Tophat2 can't find Bowtie index files *.ebwt
updated 2.6 years ago by 36k • written 6.6 years ago by ▴ 130
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0
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8.0k
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Comment: C: Calculating RPKM for DESeq
updated 2.6 years ago by 36k • written 6.6 years ago by ▴ 130
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