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Answer: Answer: UMI RNASeq data analysis
9 months ago by kanika.151 ▴ 130
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753
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Comment: Comment: Low mapping rate due to rRNA
9 months ago by kanika.151 ▴ 130
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1
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579
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Comment: Comment: About Whole Exome Sequencing analysis
9 months ago by kanika.151 ▴ 130
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365
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Answer: Answer: How to find Polygenic Risk Scores?
9 months ago by kanika.151 ▴ 130
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522
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Answer: Answer: Extract R1 and R2 from sam file generated by bowtie2
9 months ago by kanika.151 ▴ 130
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245
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GnomAD subset vcf files
exac gnomad population vcf subset
9 months ago by kanika.151 ▴ 130
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2.5k
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Answer: Answer: Some questions about call variants for mtDNA using GATK HaplotypeCaller
11 months ago by kanika.151 ▴ 130
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3.5k
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Answer: Answer: Read Counts from miRDeep2 for posterior DE analysis
16 months ago by kanika.151 ▴ 130
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2.7k
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Answer: Answer: How to generate the contigs ploidy priors table (yeast) for GATK DetermineGermli
16 months ago by kanika.151 ▴ 130
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8.5k
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Comment: Comment: Relatedness vs relatedness2 from vcftools give different results
18 months ago by kanika.151 ▴ 130
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1.7k
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Comment: Comment: Using wildcards in function in rules
22 months ago by kanika.151 ▴ 130
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1
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1.7k
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Comment: Comment: Using wildcards in function in rules
22 months ago by kanika.151 ▴ 130
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1
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1.7k
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Comment: Comment: Using wildcards in function in rules
22 months ago by kanika.151 ▴ 130
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1
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1.7k
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Comment: Comment: Using wildcards in function in rules
22 months ago by kanika.151 ▴ 130
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1
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1.7k
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Answer: Answer: Using wildcards in function in rules
22 months ago by kanika.151 ▴ 130
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2
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667
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Answer: Answer: Snakemake error
22 months ago by kanika.151 ▴ 130
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4.9k
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Answer: Answer: Difficulty filtering VCF file with vcftools
22 months ago by kanika.151 ▴ 130
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4.0k
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Comment: Comment: GATK DepthOfCoverage: 'total coverage' and 'mean coverage' meaning
22 months ago by kanika.151 ▴ 130
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4.0k
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Comment: Comment: GATK DepthOfCoverage: 'total coverage' and 'mean coverage' meaning
22 months ago by kanika.151 ▴ 130
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0
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1.9k
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Comment: Comment: gene annotation with dbNSFP_gene
2.0 years ago by kanika.151 ▴ 130
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2.6k
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Answer: A: Suggest vcf filtered parameter for gatk VariantFiltration
2.0 years ago by kanika.151 ▴ 130
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2.6k
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Comment: C: counting after aligning miRNA reads to miRBase mature miRNA instead of reference
2.1 years ago by kanika.151 ▴ 130
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1.8k
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Comment: C: counts reads for miRNA mapped againt mirbase
2.1 years ago by kanika.151 ▴ 130
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1
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2.6k
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Answer: A: counting after aligning miRNA reads to miRBase mature miRNA instead of reference
2.1 years ago by kanika.151 ▴ 130
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1
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842
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Comment: C: Non-coding region of WGS
2.2 years ago by kanika.151 ▴ 130
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1
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842
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Comment: C: Non-coding region of WGS
2.2 years ago by kanika.151 ▴ 130
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1.4k
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Answer: Answer: Which VCF's to use for BQSR in GATK
updated 5 days ago by 38k • written 2.2 years ago by ▴ 130
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6
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809
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Alignment in WES
trimmomatic alignment WES exome sequencing
updated 2.3 years ago by 20 • written 2.4 years ago by ▴ 130
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1
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809
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Comment: C: Alignment in WES
2.4 years ago by kanika.151 ▴ 130
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1
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809
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Comment: C: Alignment in WES
2.4 years ago by kanika.151 ▴ 130
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1
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2.2k
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Answer: A: featureCounts with pseudobam
3.0 years ago by kanika.151 ▴ 130
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4.1k
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Comment: C: Error ecountered while running conifer with demo data set
3.1 years ago by kanika.151 ▴ 130
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4.1k
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Comment: C: Error ecountered while running conifer with demo data set
3.1 years ago by kanika.151 ▴ 130
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0
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4.1k
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Comment: C: Error ecountered while running conifer with demo data set
3.1 years ago by kanika.151 ▴ 130
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0
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1.7k
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Answer: A: tables.exceptions.NoSuchNodeError: group ``/`` does not have a child named ``sam
3.1 years ago by kanika.151 ▴ 130
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0
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4.1k
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Comment: C: Error ecountered while running conifer with demo data set
3.1 years ago by kanika.151 ▴ 130
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2.4k
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Comment: C: 1 base pair to 'x' byte conversion
3.2 years ago by kanika.151 ▴ 130
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1
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2.4k
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Comment: A: 1 base pair to 'x' byte conversion
3.2 years ago by kanika.151 ▴ 130
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6
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2.4k
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1 base pair to 'x' byte conversion
fastq file cluster conversion base pairs byte
3.2 years ago by kanika.151 ▴ 130
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0
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483
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Answer: A: GATK Indelrealignment Problem : The input is truncated?
3.2 years ago by kanika.151 ▴ 130
1
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0
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18k
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Answer: A: Extract Dendrogram Information From Heatmap Generated By Heatmap.2
updated 3.3 years ago by 38k • written 7.2 years ago by ▴ 130
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1
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3.3k
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Comment: C: featureCounts segmentation fault, Is there any solution yet ?
updated 3.3 years ago by 38k • written 7.2 years ago by ▴ 130
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0
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2.7k
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Answer: A: Trinity predicting more number of genes?
updated 3.3 years ago by 38k • written 7.2 years ago by ▴ 130
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0
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2.7k
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Comment: C: Trinity predicting more number of genes?
updated 3.3 years ago by 38k • written 7.2 years ago by ▴ 130
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1
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3.3k
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Comment: C: featureCounts segmentation fault, Is there any solution yet ?
updated 3.3 years ago by 38k • written 7.3 years ago by ▴ 130
1
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0
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7.7k
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Comment: C: htseq-count cannot find pysam
updated 3.3 years ago by 38k • written 7.3 years ago by ▴ 130
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0
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10k
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Comment: C: Converting PDBQT output to PDB in VINA
updated 3.3 years ago by 38k • written 7.3 years ago by ▴ 130
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0
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2.9k
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Comment: C: Which one is better and Why? edgeR DESeq2
updated 3.3 years ago by 38k • written 7.3 years ago by ▴ 130
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0
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5.5k
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Comment: C: Tophat2 can't find Bowtie index files *.ebwt
updated 3.3 years ago by 38k • written 7.3 years ago by ▴ 130
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0
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8.4k
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Comment: C: Calculating RPKM for DESeq
updated 3.3 years ago by 38k • written 7.3 years ago by ▴ 130
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