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Answer: Answer: UMI RNASeq data analysis
22 months ago by kanika.151 ▴ 130
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1.3k
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Comment: Comment: Low mapping rate due to rRNA
22 months ago by kanika.151 ▴ 130
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1
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885
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Comment: Comment: About Whole Exome Sequencing analysis
22 months ago by kanika.151 ▴ 130
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568
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Answer: Answer: How to find Polygenic Risk Scores?
22 months ago by kanika.151 ▴ 130
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0
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929
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Answer: Answer: Extract R1 and R2 from sam file generated by bowtie2
22 months ago by kanika.151 ▴ 130
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0
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450
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GnomAD subset vcf files
exac gnomad population vcf subset
22 months ago by kanika.151 ▴ 130
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0
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2.9k
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Answer: Answer: Some questions about call variants for mtDNA using GATK HaplotypeCaller
23 months ago by kanika.151 ▴ 130
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4.1k
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Answer: Answer: Read Counts from miRDeep2 for posterior DE analysis
2.4 years ago by kanika.151 ▴ 130
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0
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3.4k
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Answer: Answer: How to generate the contigs ploidy priors table (yeast) for GATK DetermineGermli
2.4 years ago by kanika.151 ▴ 130
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0
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11k
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Comment: Comment: Relatedness vs relatedness2 from vcftools give different results
2.6 years ago by kanika.151 ▴ 130
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0
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2.6k
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Comment: Comment: Using wildcards in function in rules
2.9 years ago by kanika.151 ▴ 130
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1
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2.6k
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Comment: Comment: Using wildcards in function in rules
2.9 years ago by kanika.151 ▴ 130
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1
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2.6k
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Comment: Comment: Using wildcards in function in rules
2.9 years ago by kanika.151 ▴ 130
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1
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2.6k
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Comment: Comment: Using wildcards in function in rules
2.9 years ago by kanika.151 ▴ 130
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1
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2.6k
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Answer: Answer: Using wildcards in function in rules
2.9 years ago by kanika.151 ▴ 130
1
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2
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920
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Answer: Answer: Snakemake error
2.9 years ago by kanika.151 ▴ 130
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0
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5.7k
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Answer: Answer: Difficulty filtering VCF file with vcftools
2.9 years ago by kanika.151 ▴ 130
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0
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4.5k
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Comment: Comment: GATK DepthOfCoverage: 'total coverage' and 'mean coverage' meaning
2.9 years ago by kanika.151 ▴ 130
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0
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4.5k
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Comment: Comment: GATK DepthOfCoverage: 'total coverage' and 'mean coverage' meaning
2.9 years ago by kanika.151 ▴ 130
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0
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2.3k
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Comment: Comment: gene annotation with dbNSFP_gene
3.1 years ago by kanika.151 ▴ 130
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0
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2.9k
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Answer: A: Suggest vcf filtered parameter for gatk VariantFiltration
3.1 years ago by kanika.151 ▴ 130
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0
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3.1k
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Comment: C: counting after aligning miRNA reads to miRBase mature miRNA instead of reference
3.1 years ago by kanika.151 ▴ 130
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0
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2.1k
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Comment: C: counts reads for miRNA mapped againt mirbase
3.2 years ago by kanika.151 ▴ 130
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1
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3.1k
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Answer: A: counting after aligning miRNA reads to miRBase mature miRNA instead of reference
3.2 years ago by kanika.151 ▴ 130
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1
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1.3k
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Comment: C: Non-coding region of WGS
3.2 years ago by kanika.151 ▴ 130
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1
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1.3k
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Comment: C: Non-coding region of WGS
3.3 years ago by kanika.151 ▴ 130
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0
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1.7k
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Answer: Answer: Which VCF's to use for BQSR in GATK
updated 13 months ago by 43k • written 3.3 years ago by ▴ 130
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6
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1.2k
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Alignment in WES
trimmomatic alignment WES exome sequencing
updated 3.3 years ago by 20 • written 3.4 years ago by ▴ 130
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1
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1.2k
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Comment: C: Alignment in WES
3.4 years ago by kanika.151 ▴ 130
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1
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1.2k
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Comment: C: Alignment in WES
3.4 years ago by kanika.151 ▴ 130
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1
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2.5k
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Answer: A: featureCounts with pseudobam
4.0 years ago by kanika.151 ▴ 130
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0
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4.8k
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Comment: C: Error ecountered while running conifer with demo data set
4.2 years ago by kanika.151 ▴ 130
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0
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4.8k
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Comment: C: Error ecountered while running conifer with demo data set
4.2 years ago by kanika.151 ▴ 130
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0
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4.8k
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Comment: C: Error ecountered while running conifer with demo data set
4.2 years ago by kanika.151 ▴ 130
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0
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2.0k
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Answer: A: tables.exceptions.NoSuchNodeError: group ``/`` does not have a child named ``sam
4.2 years ago by kanika.151 ▴ 130
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0
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4.8k
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Comment: C: Error ecountered while running conifer with demo data set
4.2 years ago by kanika.151 ▴ 130
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0
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3.4k
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Comment: C: 1 base pair to 'x' byte conversion
4.3 years ago by kanika.151 ▴ 130
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1
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3.4k
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Comment: A: 1 base pair to 'x' byte conversion
4.3 years ago by kanika.151 ▴ 130
2
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6
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3.4k
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1 base pair to 'x' byte conversion
fastq file cluster conversion base pairs byte
4.3 years ago by kanika.151 ▴ 130
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0
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644
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Answer: A: GATK Indelrealignment Problem : The input is truncated?
4.3 years ago by kanika.151 ▴ 130
1
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0
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18k
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Answer: A: Extract Dendrogram Information From Heatmap Generated By Heatmap.2
updated 4.3 years ago by 43k • written 8.3 years ago by ▴ 130
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1
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4.2k
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Comment: C: featureCounts segmentation fault, Is there any solution yet ?
updated 4.3 years ago by 43k • written 8.3 years ago by ▴ 130
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0
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3.3k
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Answer: A: Trinity predicting more number of genes?
updated 4.3 years ago by 43k • written 8.3 years ago by ▴ 130
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0
replies
3.3k
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Comment: C: Trinity predicting more number of genes?
updated 4.3 years ago by 43k • written 8.3 years ago by ▴ 130
0
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1
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4.2k
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Comment: C: featureCounts segmentation fault, Is there any solution yet ?
updated 4.4 years ago by 43k • written 8.3 years ago by ▴ 130
1
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0
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8.6k
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Comment: C: htseq-count cannot find pysam
updated 4.4 years ago by 43k • written 8.4 years ago by ▴ 130
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0
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12k
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Comment: C: Converting PDBQT output to PDB in VINA
updated 4.4 years ago by 43k • written 8.4 years ago by ▴ 130
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0
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3.2k
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Comment: C: Which one is better and Why? edgeR DESeq2
updated 4.4 years ago by 43k • written 8.4 years ago by ▴ 130
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0
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6.3k
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Comment: C: Tophat2 can't find Bowtie index files *.ebwt
updated 4.4 years ago by 43k • written 8.4 years ago by ▴ 130
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0
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9.1k
views
Comment: C: Calculating RPKM for DESeq
updated 4.4 years ago by 43k • written 8.4 years ago by ▴ 130
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