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Answer: A: How to access specifically 30x NA12878 sequencing runs
6.7 years ago by benformatics 4.2k
2
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2.1k
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Answer: A: Assign a genomic region to a window
6.7 years ago by benformatics 4.2k
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2
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4.9k
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Comment: C: Count antisense transcripts using STAR --quantMode
6.7 years ago by benformatics 4.2k
2
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2
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4.9k
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Answer: A: Count antisense transcripts using STAR --quantMode
6.7 years ago by benformatics 4.2k
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4.9k
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Comment: C: Count antisense transcripts using STAR --quantMode
6.7 years ago by benformatics 4.2k
2
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0
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4.9k
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Comment: C: Count antisense transcripts using STAR --quantMode
6.7 years ago by benformatics 4.2k
1
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1
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12k
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Comment: C: Identify adapter sequences for trimming from Illumina paired end fastq files
6.7 years ago by benformatics 4.2k
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1.4k
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Answer: A: Finding fusion genes
6.7 years ago by benformatics 4.2k
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1
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12k
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Answer: A: Identify adapter sequences for trimming from Illumina paired end fastq files
6.7 years ago by benformatics 4.2k
6
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2
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8.7k
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Answer: A: MACS2 option for ATAC seq?
6.7 years ago by benformatics 4.2k
1
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0
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1.1k
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Comment: C: MS level RESEARCH IDEA
6.7 years ago by benformatics 4.2k
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8.7k
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Comment: A: MACS2 option for ATAC seq?
6.7 years ago by benformatics 4.2k
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0
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6.5k
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Answer: A: How to get number of exons for each transcript in biomart
6.7 years ago by benformatics 4.2k
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1
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5.8k
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Comment: C: shall we consider -- keep-dup all when we removed duplication?
6.7 years ago by benformatics 4.2k
3
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1
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5.8k
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Answer: A: shall we consider -- keep-dup all when we removed duplication?
6.7 years ago by benformatics 4.2k
0
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1
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1.9k
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Answer: A: Differential Expression and Co-expression analysis from Cell type-specific datas
6.7 years ago by benformatics 4.2k
0
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1
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3.7k
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Comment: C: Parse raw vcf in R from CollapsedVCF (VariantAnnotation library)
6.7 years ago by benformatics 4.2k
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1.4k
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Comment: C: Retrieving domain loci
6.8 years ago by benformatics 4.2k
15
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2
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46k
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Answer: A: read depth using samtools
6.8 years ago by benformatics 4.2k
3
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1
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1.5k
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Answer: A: Adding unique index or names to merged data frames
6.9 years ago by benformatics 4.2k
0
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1
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15k
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Answer: A: RNA-seq analysis using R
6.9 years ago by benformatics 4.2k
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0
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2.2k
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Comment: C: Evaluate overlap of regions
7.0 years ago by benformatics 4.2k
1
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1
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2.2k
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Answer: A: Evaluate overlap of regions
7.0 years ago by benformatics 4.2k
2
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1
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4.8k
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Comment: C: smallRNA sequencing workflow and Database usage
7.0 years ago by benformatics 4.2k
3
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2.5k
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Answer: A: overlapping GRanges and GAlignments objects - "within" type results depend on "m
7.1 years ago by benformatics 4.2k
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0
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3.7k
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Comment: C: Macs called peaks shorter than 1kb
7.1 years ago by benformatics 4.2k
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2
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3.7k
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Answer: A: Macs called peaks shorter than 1kb
7.1 years ago by benformatics 4.2k
1
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1
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3.7k
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Comment: C: Macs called peaks shorter than 1kb
7.1 years ago by benformatics 4.2k
3
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1
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3.8k
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Answer: A: Faster UMI extraction from scRNA-Seq data
7.1 years ago by benformatics 4.2k
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0
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1.4k
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Answer: A: What information can we extract from this experiment: RNA-seq of a High-salt tol
7.2 years ago by benformatics 4.2k
3
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0
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2.5k
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Answer: A: Creating bins based on scaffold size file
7.2 years ago by benformatics 4.2k
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0
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2.2k
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Answer: A: Add string to list of protein sequences in fasta file with different lengh
7.2 years ago by benformatics 4.2k
0
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0
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8.6k
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Answer: A: Extract only rows with main chromosomes (1-22, X, Y) on first column?
7.2 years ago by benformatics 4.2k
13
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0
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4.6k
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Answer: A: Subset of genes with at least 1 intron larger than 5000 kbp
7.2 years ago by benformatics 4.2k
0
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1
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5.8k
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Comment: C: MSigDB for Multiple Organisms in a Tidy Data Format
7.4 years ago by benformatics 4.2k
1
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0
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1.9k
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Answer: A: get mRNAs by TxDb
8.2 years ago by benformatics 4.2k
1
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0
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11k
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Comment: C: COSMIC vcf file compatibility for Mutect2
8.2 years ago by benformatics 4.2k
3
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3
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2.6k
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Check my work? Hyper geometric test on enrichment between iCLIP sites across experiments
hypergeometric enrichment
updated 9.0 years ago by ★ 4.0k • written 9.0 years ago by 4.2k
1
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0
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17k
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Answer: A: How To Get The Gene Name Interactively In A R Plot
9.1 years ago by benformatics 4.2k
1
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0
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4.3k
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Answer: A: Duplicate miRNAs with different read counts in miRDeep2
9.1 years ago by benformatics 4.2k
2
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0
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11k
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Answer: A: How Many Reads In A Bam File Are Aligned To a Specific Region
9.1 years ago by benformatics 4.2k
1
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1
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9.9k
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Answer: A: How to merge (or perform left joins) on GRange objects?
9.1 years ago by benformatics 4.2k
1
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0
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3.7k
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Answer: A: Calculation of read counts in RNA-seq
9.1 years ago by benformatics 4.2k
0
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0
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2.5k
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Answer: A: Read counts mapping against rrna genes in prokaryotic RNA-Seq experiment
9.1 years ago by benformatics 4.2k
1
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2
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12k
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Answer: A: edgeR and GO analysis using goana
9.1 years ago by benformatics 4.2k
0
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1
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43k
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Comment: C: ATAC-seq peak calling with MACS
9.1 years ago by benformatics 4.2k
0
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1
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12k
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Comment: C: edgeR and GO analysis using goana
9.1 years ago by benformatics 4.2k
3
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0
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6.6k
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Answer: A: Pol II chip-seq data analysis
9.1 years ago by benformatics 4.2k
0
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1
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43k
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Comment: C: ATAC-seq peak calling with MACS
9.1 years ago by benformatics 4.2k
0
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1
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7.1k
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Comment: C: Does TPM account for fragments?
9.2 years ago by benformatics 4.2k
503 results • Page 10 of 11
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