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Comment: Comment: cellranger count aggregated to transcripts
4.3 years ago by benformatics 4.2k
1
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2
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2.5k
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Answer: Answer: cellranger count aggregated to transcripts
4.3 years ago by benformatics 4.2k
1
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0
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1.9k
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Answer: Answer: Issue with bed to bam conversion - sequence in bam headers
4.3 years ago by benformatics 4.2k
1
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0
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1.9k
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Comment: Comment: Strand specific library
4.3 years ago by benformatics 4.2k
0
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0
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1.9k
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Comment: Comment: Strand specific library
4.3 years ago by benformatics 4.2k
1
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2
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1.9k
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Answer: Answer: Strand specific library
4.3 years ago by benformatics 4.2k
0
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1
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2.6k
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Comment: Comment: Spatial transcriptomics data
4.3 years ago by benformatics 4.2k
1
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2
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2.6k
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Comment: Comment: Spatial transcriptomics data
4.3 years ago by benformatics 4.2k
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0
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1.3k
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Comment: Comment: Exons Distribution from single cell data.
4.3 years ago by benformatics 4.2k
2
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2
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1.3k
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Answer: Answer: Exons Distribution from single cell data.
4.3 years ago by benformatics 4.2k
0
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0
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1.7k
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Answer: Answer: Filter unique values from a data frame in R
4.3 years ago by benformatics 4.2k
2
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2
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2.5k
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Answer: Answer: RNA variant calling, aligned with HiSat2
4.3 years ago by benformatics 4.2k
1
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0
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1.9k
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Answer: Answer: Using BiomaRt returns to get entrez gene ids returns an error. Why is this happe
4.3 years ago by benformatics 4.2k
0
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1
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5.3k
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Answer: Answer: The exon numbers of each transcript,
4.3 years ago by benformatics 4.2k
2
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1
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2.8k
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Answer: Answer: Flye assembly, increased coverage results in decreased N50
4.3 years ago by benformatics 4.2k
2
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1
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1.9k
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Answer: Answer: How to paralle trim_galore for single sample?
4.3 years ago by benformatics 4.2k
1
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0
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2.0k
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Comment: Comment: How to use DELLY on Galaxy
4.3 years ago by benformatics 4.2k
0
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1
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2.0k
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Answer: Answer: How to use DELLY on Galaxy
4.3 years ago by benformatics 4.2k
0
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1
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1.5k
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Comment: Comment: Combine full-length and 3` RNAseq, is it possible?
4.5 years ago by benformatics 4.2k
1
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1
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3.5k
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Answer: Answer: 10x genomics single cell RNA-Seq data submission to GEO
4.5 years ago by benformatics 4.2k
0
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0
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1.1k
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Answer: Answer: Genomic Ranges of data from a chromosome
4.5 years ago by benformatics 4.2k
0
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1
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2.8k
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Comment: Comment: CPM threshold for RNASeq count data
4.5 years ago by benformatics 4.2k
1
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1
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4.7k
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Comment: Comment: how is seurat computing logcounts?
4.5 years ago by benformatics 4.2k
1
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0
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2.5k
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Answer: Answer: Scatterplot ggplot: too many overlapping point make an area magnified/ increase
4.5 years ago by benformatics 4.2k
0
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1
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4.7k
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Comment: Comment: how is seurat computing logcounts?
4.5 years ago by benformatics 4.2k
3
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1
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4.7k
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Answer: Answer: how is seurat computing logcounts?
4.5 years ago by benformatics 4.2k
1
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0
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4.2k
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Answer: Answer: Filter SingleCellExperiment object just by one gene expression
4.5 years ago by benformatics 4.2k
0
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0
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1.7k
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Comment: Comment: Remove 2nd colon and rest of the values in a dataframe using R/ Unix
4.5 years ago by benformatics 4.2k
1
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2
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1.7k
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Answer: Answer: Remove 2nd colon and rest of the values in a dataframe using R/ Unix
4.5 years ago by benformatics 4.2k
0
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0
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1.2k
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Comment: Comment: Coverage required for 3' end RNA-seq methods
4.5 years ago by benformatics 4.2k
1
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2
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1.2k
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Answer: Answer: Coverage required for 3' end RNA-seq methods
4.5 years ago by benformatics 4.2k
0
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0
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1.2k
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Comment: C: Pair ended samples cannot map to the genome
4.7 years ago by benformatics 4.2k
0
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0
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2.5k
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Comment: C: Variant calling on RNA-Seq data
4.7 years ago by benformatics 4.2k
3
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1
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2.5k
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Answer: A: Variant calling on RNA-Seq data
4.7 years ago by benformatics 4.2k
0
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1
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2.4k
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Comment: C: ground truth dataset for BAM read counts
4.7 years ago by benformatics 4.2k
0
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1
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4.3k
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Comment: C: Trying to add ensembl_transcript_id using Biomart
4.8 years ago by benformatics 4.2k
0
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0
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164k
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Comment: C: Converting Genome Coordinates From One Genome Version To Another (Ucsc Liftover,
4.9 years ago by benformatics 4.2k
2
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0
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2.6k
views
Answer: A: Calculating GC content around a specific genomic location
4.9 years ago by benformatics 4.2k
0
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0
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2.1k
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Comment: C: Is ENA API down?
4.9 years ago by benformatics 4.2k
0
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0
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1.6k
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Comment: C: Get all rows matching to list
4.9 years ago by benformatics 4.2k
1
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1
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1.6k
views
Answer: A: how to get all rows matching to list in R
4.9 years ago by benformatics 4.2k
0
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1
reply
6.2k
views
Comment: C: Why should ATAC-seq mapped reads be shifted +4 and -5 for +strand and -strand, r
4.9 years ago by benformatics 4.2k
4
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1
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6.2k
views
Answer: A: Why should ATAC-seq mapped reads be shifted +4 and -5 for +strand and -strand, r
4.9 years ago by benformatics 4.2k
0
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1
reply
5.7k
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Comment: C: Does trimming RNA-Seq reads affect the differentially expressed genes?
5.0 years ago by benformatics 4.2k
0
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1
reply
6.9k
views
Comment: C: Issue installing rmats using conda
5.0 years ago by benformatics 4.2k
0
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0
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3.2k
views
Comment: C: key lookup changes with AnnotationDbi version
5.0 years ago by benformatics 4.2k
0
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0
replies
2.5k
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Comment: C: How to identify mRNA 3' UTR by bulk RNA-seq data
5.0 years ago by benformatics 4.2k
1
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1
reply
3.2k
views
Answer: A: key lookup changes with AnnotationDbi version
5.1 years ago by benformatics 4.2k
11
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2
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43k
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Answer: A: ATAC-seq peak calling with MACS
5.1 years ago by benformatics 4.2k
1
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1
reply
6.9k
views
Comment: C: Issue installing rmats using conda
5.1 years ago by benformatics 4.2k
503 results • Page 6 of 11
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