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resolving specific clusters from data (spectral clustering)
clustering
updated 22 months ago by ★ 27k • written 22 months ago by 3.9k
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659
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Comment: Comment: resolving specific clusters from data (spectral clustering)
22 months ago by benformatics 3.9k
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733
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Comment: Comment: 3 reads with the same ID in sam file
23 months ago by benformatics 3.9k
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639
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Answer: Answer: GRanges strand identification
23 months ago by benformatics 3.9k
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2.5k
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Answer: Answer: What counts as a valid biological replicate in single cell RNAseq?
23 months ago by benformatics 3.9k
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1.4k
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Comment: Comment: Mitochondrial genes as Seurat markers in nuclear sequencing data
23 months ago by benformatics 3.9k
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1.6k
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Answer: Answer: Is it possible to calculate TPM using 10X Genomics public data?
23 months ago by benformatics 3.9k
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1.8k
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Comment: Comment: Read counts an order of magnitude higher on one chromosome
24 months ago by benformatics 3.9k
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1
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1.8k
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Answer: Answer: Read counts an order of magnitude higher on one chromosome
24 months ago by benformatics 3.9k
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1
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1.8k
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Comment: Comment: Read counts an order of magnitude higher on one chromosome
24 months ago by benformatics 3.9k
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12k
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Comment: Comment: Can Illumina bcl2fastq use only one index for demultiplexing dual index sequenci
24 months ago by benformatics 3.9k
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1
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12k
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Comment: Comment: Can Illumina bcl2fastq use only one index for demultiplexing dual index sequenci
24 months ago by benformatics 3.9k
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1
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1.7k
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Answer: Answer: Amino Acid identity matrix help
24 months ago by benformatics 3.9k
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3
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1.7k
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Comment: Comment: Amino Acid identity matrix help
24 months ago by benformatics 3.9k
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1
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1.7k
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Comment: Comment: Amino Acid identity matrix help
24 months ago by benformatics 3.9k
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470
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Answer: Answer: Retrieving starting/ending base cordinates and orientations of genes from TAIR u
2.0 years ago by benformatics 3.9k
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876
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Comment: Comment: What's the difference between library diversity and unique molecules?
2.0 years ago by benformatics 3.9k
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1
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876
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Answer: Answer: What's the difference between library diversity and unique molecules?
2.0 years ago by benformatics 3.9k
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3.1k
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Comment: Comment: ATAC-seq fragment size distribution - huge spike at 150 bp
2.1 years ago by benformatics 3.9k
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1
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1.8k
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Answer: Answer: Pool or not to pool
2.1 years ago by benformatics 3.9k
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12k
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Comment: Comment: Different Ensembl Ids point to the same gene symbol.
2.1 years ago by benformatics 3.9k
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728
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Comment: Comment: igv viewer
2.2 years ago by benformatics 3.9k
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1
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3.1k
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Comment: Comment: ATAC-seq fragment size distribution - huge spike at 150 bp
2.2 years ago by benformatics 3.9k
1
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1
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3.1k
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Answer: Answer: ATAC-seq fragment size distribution - huge spike at 150 bp
2.2 years ago by benformatics 3.9k
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0
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713
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Answer: Answer: Is there a tool available to check a Tm for a DNA fragment or sequence?
2.2 years ago by benformatics 3.9k
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1
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1.8k
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Comment: Comment: What do we call a transcript?
2.2 years ago by benformatics 3.9k
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2
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1.8k
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Comment: Comment: What do we call a transcript?
2.2 years ago by benformatics 3.9k
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1.4k
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Answer: Answer: understanding how cutadapt trims
2.3 years ago by benformatics 3.9k
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2
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1.4k
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Comment: Comment: understanding how cutadapt trims
2.3 years ago by benformatics 3.9k
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0
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917
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Answer: Answer: Output splicing for alignment with gff or gtf
2.3 years ago by benformatics 3.9k
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0
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509
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Comment: Comment: Validating splice site using protein sequence
2.3 years ago by benformatics 3.9k
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0
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8.4k
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Answer: Answer: Adding optional tags to a BAM file
2.3 years ago by benformatics 3.9k
1
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0
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734
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Comment: Comment: Are there Batch effect among different samples?
2.5 years ago by benformatics 3.9k
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0
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924
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Comment: Comment: How should I deal with my RNAseq result with high % of mutiple aligned reads?
2.6 years ago by benformatics 3.9k
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2
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1.4k
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EBI European Nucleotide Archive (ERA) aspera access broken
elixir ebi ena
updated 2.6 years ago by 19k • written 2.6 years ago by 3.9k
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1.9k
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Comment: Comment: Data Manipulation
2.6 years ago by benformatics 3.9k
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1.9k
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Comment: Comment: Data Manipulation
2.6 years ago by benformatics 3.9k
2
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3
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1.9k
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Answer: Answer: Data Manipulation
2.6 years ago by benformatics 3.9k
1
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1
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757
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Comment: Comment: GC bias in small RNA-seq data
2.6 years ago by benformatics 3.9k
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0
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1.9k
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Answer: Answer: How to quantify piRNAs ?
2.6 years ago by benformatics 3.9k
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0
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650
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Comment: Comment: Mark duplicates the bam files sorted by coordinates
2.7 years ago by benformatics 3.9k
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0
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850
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Comment: Comment: Germline Cancer Mutations
2.7 years ago by benformatics 3.9k
2
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1
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850
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Answer: Answer: Germline Cancer Mutations
2.7 years ago by benformatics 3.9k
2
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1
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1.8k
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Answer: Answer: Good or bad idea to annotate with newer genome build?
2.7 years ago by benformatics 3.9k
2
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0
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800
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Answer: Answer: R package for structural variation representation ?
2.7 years ago by benformatics 3.9k
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1
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1.2k
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Comment: Comment: TMM normalization and sex effect
2.7 years ago by benformatics 3.9k
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0
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649
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Comment: Comment: Weird 8bp peak in (clean) small RNA data
2.7 years ago by benformatics 3.9k
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0
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1.3k
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Comment: Comment: Mapping unique GO term description given a specific GO id
2.7 years ago by benformatics 3.9k
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3.3k
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Answer: Answer: Are there any alternatives to Liftoff - Mapping annotations (GFF/GTF) between as
2.7 years ago by benformatics 3.9k
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1
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1.1k
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Comment: Comment: convert genomic bigWig file to transcriptome space
2.7 years ago by benformatics 3.9k
476 results • Page 4 of 10
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