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3
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1
reply
3.3k
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Answer:
Answer: how is seurat computing logcounts?
3.0 years ago by
benformatics
3.9k
1
vote
0
replies
3.0k
views
Answer:
Answer: Filter SingleCellExperiment object just by one gene expression
3.0 years ago by
benformatics
3.9k
1
vote
2
replies
1.1k
views
Answer:
Answer: Remove 2nd colon and rest of the values in a dataframe using R/ Unix
3.0 years ago by
benformatics
3.9k
1
vote
2
replies
744
views
Answer:
Answer: Coverage required for 3' end RNA-seq methods
3.0 years ago by
benformatics
3.9k
3
votes
1
reply
1.6k
views
Answer:
A: Variant calling on RNA-Seq data
3.2 years ago by
benformatics
3.9k
2
votes
0
replies
1.8k
views
Answer:
A: Calculating GC content around a specific genomic location
3.4 years ago by
benformatics
3.9k
1
vote
1
reply
994
views
Answer:
A: how to get all rows matching to list in R
3.4 years ago by
benformatics
3.9k
4
votes
1
reply
3.5k
views
Answer:
A: Why should ATAC-seq mapped reads be shifted +4 and -5 for +strand and -strand, r
3.4 years ago by
benformatics
3.9k
1
vote
1
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1.8k
views
Answer:
A: key lookup changes with AnnotationDbi version
3.6 years ago by
benformatics
3.9k
11
votes
2
replies
36k
views
Answer:
A: ATAC-seq peak calling with MACS
3.6 years ago by
benformatics
3.9k
1
vote
1
reply
4.8k
views
Answer:
A: Issue installing rmats using conda
3.6 years ago by
benformatics
3.9k
2
votes
2
replies
1.6k
views
Answer:
A: Preventing alignment to new Splice Junctions with STAR
3.6 years ago by
benformatics
3.9k
2
votes
1
reply
1.7k
views
Answer:
C: Keep metadata gc column using GenomicRanges
3.6 years ago by
benformatics
3.9k
3
votes
1
reply
2.7k
views
Answer:
A: Which is the proper RNA-seq count table transformation to perform hierarchial cl
3.7 years ago by
benformatics
3.9k
1
vote
1
reply
757
views
Answer:
C: Is it feasible to look for mutations in RNA-seq data from FFPE samples?
3.7 years ago by
benformatics
3.9k
0
votes
0
replies
744
views
Answer:
A: Getting the mRNA sequence from genome annotation
3.8 years ago by
benformatics
3.9k
1
vote
1
reply
3.3k
views
Answer:
A: How to properly analyze many RDS files in Bioconductor
3.8 years ago by
benformatics
3.9k
1
vote
1
reply
1.2k
views
Answer:
A: Is it acceptable to use different FDR cutoffs for peak calling in different ChIP
3.8 years ago by
benformatics
3.9k
0
votes
1
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567
views
Answer:
A: Issues analysing splitted fastq files with fastqc
3.8 years ago by
benformatics
3.9k
2
votes
1
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1.4k
views
Answer:
A: Specifying unequal replicates in deseq2 with htseq-count input
3.8 years ago by
benformatics
3.9k
0
votes
0
replies
1.3k
views
Answer:
A: Read genotype information with VariantAnnotation
4.0 years ago by
benformatics
3.9k
1
vote
0
replies
2.2k
views
Answer:
A: Finding the Refseq Soft-masked Regions
4.0 years ago by
benformatics
3.9k
3
votes
1
reply
2.1k
views
Answer:
A: GGplot2 coord flip problem
4.0 years ago by
benformatics
3.9k
0
votes
0
replies
1.8k
views
Answer:
A: What is the best way to analyze and enrich a list of DE genes from RNAseq?
4.1 years ago by
benformatics
3.9k
0
votes
1
reply
3.0k
views
Answer:
A: How to transfer GRanges object into fasta
4.1 years ago by
benformatics
3.9k
1
vote
1
reply
1.8k
views
Answer:
A: Non-overlapping exon set for exon counting (Illumina RNA-seq)
4.2 years ago by
benformatics
3.9k
1
vote
1
reply
2.2k
views
Answer:
A: Transcript length distribution plot, based on genome + annotation
4.2 years ago by
benformatics
3.9k
0
votes
0
replies
916
views
Answer:
A: Grange object for hi-c
4.2 years ago by
benformatics
3.9k
4
votes
1
reply
4.7k
views
Answer:
A: how to unpack sra file?
4.2 years ago by
benformatics
3.9k
1
vote
1
reply
697
views
Answer:
A: How to draw a figure which is a large circle containing many differently sized c
4.2 years ago by
benformatics
3.9k
2
votes
1
reply
2.9k
views
Answer:
A: Interesting things to do with 23andme data
4.2 years ago by
benformatics
3.9k
2
votes
0
replies
8.1k
views
Answer:
A: CPM or TPM in GSEA analysis
4.2 years ago by
benformatics
3.9k
1
vote
1
reply
709
views
Answer:
A: Novel transcripts from monoculture RNAseq applied to tissue-level RNAseq
4.2 years ago by
benformatics
3.9k
2
votes
1
reply
3.2k
views
Answer:
A: Reference Transcriptome for Drosophila Melanogaster[orgn] with cellranger mkref
4.3 years ago by
benformatics
3.9k
1
vote
0
replies
1.5k
views
Answer:
A: RS SNP's to Protein Change name please
4.4 years ago by
benformatics
3.9k
0
votes
1
reply
1.8k
views
Answer:
A: Missing MQ tag from bwa mem alignments
4.4 years ago by
benformatics
3.9k
0
votes
0
replies
1.9k
views
Answer:
A: Plot read density across a normalized gene model for its each exon/intron length
4.4 years ago by
benformatics
3.9k
0
votes
0
replies
6.2k
views
Answer:
A: Somatic variant calling mutect2 tumour only
4.4 years ago by
benformatics
3.9k
1
vote
0
replies
805
views
Answer:
A: Count unique (pairwise) one and save as a matrix
4.4 years ago by
benformatics
3.9k
3
votes
1
reply
14k
views
Answer:
A: How to perform strand-aware (RNA-Seq) mapping using STAR?
4.5 years ago by
benformatics
3.9k
2
votes
1
reply
3.7k
views
Answer:
A: Using bedtools intersect on multiple bed files to retain peaks in 2 out of 3 fil
4.5 years ago by
benformatics
3.9k
3
votes
1
reply
3.3k
views
Answer:
A: Sampling random reads from BAM files with allowing same reads
4.5 years ago by
benformatics
3.9k
0
votes
1
reply
3.0k
views
Answer:
A: plotTracks - empty plot and custom genomes
4.7 years ago by
benformatics
3.9k
1
vote
0
replies
7.2k
views
Answer:
A: Hypergeometric test of gene list overlap
4.7 years ago by
benformatics
3.9k
1
vote
1
reply
3.0k
views
Answer:
A: Make org.db dynamic in AnnotationDbi::mapIds()
4.8 years ago by
benformatics
3.9k
3
votes
1
reply
2.5k
views
Answer:
A: How to sort the Q matrix from structure analyses based on countires first and th
4.8 years ago by
benformatics
3.9k
2
votes
2
replies
1.6k
views
Answer:
A: how to extract unique and the first shared exon in a given gene?
4.8 years ago by
benformatics
3.9k
2
votes
1
reply
2.2k
views
Answer:
A: Are signal values of different ChIP-seq experiments from ENCODE project comparab
4.8 years ago by
benformatics
3.9k
0
votes
1
reply
4.8k
views
Answer:
A: vcf from sorted bam
4.8 years ago by
benformatics
3.9k
0
votes
1
reply
832
views
Answer:
A: Is there any written script to assemble multiple fastq file from accession id?
4.8 years ago by
benformatics
3.9k
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