User: k.kathirvel93
k.kathirvel93 • 190
- Reputation:
- 190
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- India
- Last seen:
- 1 week, 1 day ago
- Joined:
- 3 years, 4 months ago
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Posts by k.kathirvel93
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... Hi EveryOne,
How to label Phage, resistance and virulence genes name in BRIG blast ring like this :
[BRIG][1]
[1]: https://www.google.co.in/search?q=brig%20blast%20ring%20image&hl=en&source=lnms&tbm=isch&sa=X&ved=0ahUKEwjVt4GhyZXiAhXJM48KHfc8AFYQ_AUIDigB&biw=1861 ...
written 5 weeks ago by
k.kathirvel93 • 190
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Comment:
C: convert entrez ID to miRNA
... Why don't you try STAR and FeatureCounts then DESEQ2 ? ...
written 6 weeks ago by
k.kathirvel93 • 190
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110
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Comment:
C: convert entrez ID to miRNA
... Which tool you are using for Quantification? ...
written 6 weeks ago by
k.kathirvel93 • 190
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... Hi EveryOne,
I Have 5 *P.aeruginosa* Complete NGS whole genome data and I am trying predict smallRNAs from it. The raw data was assembled and annotated. Already I tried BSRD I got 80 smallRNAs but the database was updated very long back. So, now I trying manually, till now I have extracted intergen ...
written 6 weeks ago by
k.kathirvel93 • 190
• updated
5 weeks ago by
Biostar ♦♦ 20
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... Hi EveryOne...
I have downloaded the replicates of MAQC RNA datasets from `https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE47792`
IDs :
GSM1156797 SEQC_ILM_BGI_A_1_L01_ATCACG_AC0AYTACXX
GSM1156798 SEQC_ILM_BGI_A_1_L01_ATCACG_BC0AYPACXX
GSM1156813 SEQC_ILM_BGI_A_2_L01_ACAGTG_AC0AYTACXX
G ...
written 4 months ago by
k.kathirvel93 • 190
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Comment:
C: Volcano_plot using R
... Can you mention which tool you have used for DE? Why don't you use FDR value instead od PValue? and can you explain that how the plot shoul be ? ...
written 4 months ago by
k.kathirvel93 • 190
1
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379
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Answer:
C: Volcano_plot using R
... Its `log2FoldChanges` not `log2FoldChange` in your code. ...
written 4 months ago by
k.kathirvel93 • 190
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237
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Comment:
C: Parsnp Error. Why?
... Can anyOne answer/Help this ? ...
written 4 months ago by
k.kathirvel93 • 190
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237
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Comment:
C: Parsnp Error. Why?
... Hi finswimmer,
I have downloaded the `.tar` package directly from the official page. ...
written 4 months ago by
k.kathirvel93 • 190
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... Hi EveryOne,
I am using Parsnp to extract all the core geome SNPs from my bacterial genomes. Here is the command line `./parsnp -g ref/PAO1.gbk -d Parsnp/ -p 8 -c -o Output/`. But I got a error like this
Traceback (most recent call last):
File "", line 624, in
NameError: name 'nam ...
written 4 months ago by
k.kathirvel93 • 190
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