User: k.kathirvel93
k.kathirvel93 • 190
- Reputation:
- 190
- Status:
- Trusted
- Location:
- India
- Last seen:
- 3 days, 15 hours ago
- Joined:
- 3 years ago
- Email:
- k************@gmail.com
Posts by k.kathirvel93
<prev
• 151 results •
page 1 of 16 •
next >
0
votes
0
answers
47
views
0
answers
... Hi EveryOne...
I have downloaded the replicates of MAQC RNA datasets from `https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE47792`
IDs :
GSM1156797 SEQC_ILM_BGI_A_1_L01_ATCACG_AC0AYTACXX
GSM1156798 SEQC_ILM_BGI_A_1_L01_ATCACG_BC0AYPACXX
GSM1156813 SEQC_ILM_BGI_A_2_L01_ACAGTG_AC0AYTACXX
G ...
written 6 days ago by
k.kathirvel93 • 190
0
votes
1
answer
171
views
1
answers
Comment:
C: Volcano_plot using R
... Can you mention which tool you have used for DE? Why don't you use FDR value instead od PValue? and can you explain that how the plot shoul be ? ...
written 22 days ago by
k.kathirvel93 • 190
1
vote
1
answer
171
views
1
answers
Answer:
C: Volcano_plot using R
... Its `log2FoldChanges` not `log2FoldChange` in your code. ...
written 22 days ago by
k.kathirvel93 • 190
0
votes
0
answers
125
views
0
answers
Comment:
C: Parsnp Error. Why?
... Can anyOne answer/Help this ? ...
written 23 days ago by
k.kathirvel93 • 190
0
votes
0
answers
125
views
0
answers
Comment:
C: Parsnp Error. Why?
... Hi finswimmer,
I have downloaded the `.tar` package directly from the official page. ...
written 26 days ago by
k.kathirvel93 • 190
1
vote
0
answers
125
views
0
answers
... Hi EveryOne,
I am using Parsnp to extract all the core geome SNPs from my bacterial genomes. Here is the command line `./parsnp -g ref/PAO1.gbk -d Parsnp/ -p 8 -c -o Output/`. But I got a error like this
Traceback (most recent call last):
File "", line 624, in
NameError: name 'nam ...
written 26 days ago by
k.kathirvel93 • 190
0
votes
2
answers
188
views
2
answers
... Better do not go with only logFC, consider the genes which have high normalized counts and difference compared to control, with logFC <2 or 1.5. ...
written 8 weeks ago by
k.kathirvel93 • 190
0
votes
1
answer
180
views
1
answers
... https://www.ebi.ac.uk/sites/ebi.ac.uk/files/content.ebi.ac.uk/materials/2014/140217_AgriOmics/dan_bolser_snp_calling.pdf
Is this protocol will help for *p.aeruginosa* also ? ...
written 8 weeks ago by
k.kathirvel93 • 190
0
votes
1
answer
180
views
1
answer
... HI EveryOne,
I Have a in-house *pseudomonas aeruginosa* bacterial whole genome data, and now i want to extract SNP from that. How can i do that ? Thanks in advance for any suggestions. ...
written 8 weeks ago by
k.kathirvel93 • 190
• updated
8 weeks ago by
shubhra.bhattacharya • 120
0
votes
0
answers
145
views
0
answers
Comment:
C: target gene selection for miRNA
... "I have a list of differentially expressed genes" - genes or miRNAs ? ...
written 8 weeks ago by
k.kathirvel93 • 190
Latest awards to k.kathirvel93
Popular Question
13 days ago,
created a question with more than 1,000 views.
For How to delete my post in biostars ?
Popular Question
23 days ago,
created a question with more than 1,000 views.
For How to delete my post in biostars ?
Popular Question
6 weeks ago,
created a question with more than 1,000 views.
For How to delete my post in biostars ?
Popular Question
3 months ago,
created a question with more than 1,000 views.
For How to get contigs from scaffolds
Voter
3 months ago,
voted more than 100 times.
Scholar
4 months ago,
created an answer that has been accepted.
For A: Aligning Contigs of various Mtb strains to a reference genome and get the varian
Popular Question
5 months ago,
created a question with more than 1,000 views.
For How to get contigs from scaffolds
Scholar
6 months ago,
created an answer that has been accepted.
For A: Aligning Contigs of various Mtb strains to a reference genome and get the varian
Centurion
6 months ago,
created 100 posts.
Popular Question
9 months ago,
created a question with more than 1,000 views.
For Sort Sequences In A Fasta File According To The peg List
Popular Question
12 months ago,
created a question with more than 1,000 views.
For How to get contigs from scaffolds
Supporter
16 months ago,
voted at least 25 times.
Popular Question
18 months ago,
created a question with more than 1,000 views.
For What is the exact definition for scaffold?
Use of this site constitutes acceptance of our User
Agreement
and Privacy
Policy.
Powered by Biostar
version 2.3.0
Traffic: 1895 users visited in the last hour