User: k.kathirvel93

gravatar for k.kathirvel93
k.kathirvel93200
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India
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Posts by k.kathirvel93

<prev • 155 results • page 1 of 16 • next >
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How to label Phage, resistance and virulence genes name in BRIG blast ring ?
... Hi EveryOne, How to label Phage, resistance and virulence genes name in BRIG blast ring like this : [BRIG][1] [1]: https://www.google.co.in/search?q=brig%20blast%20ring%20image&hl=en&source=lnms&tbm=isch&sa=X&ved=0ahUKEwjVt4GhyZXiAhXJM48KHfc8AFYQ_AUIDigB&biw=1861 ...
genome gene next-gen sequence sequencing written 5 months ago by k.kathirvel93200
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Comment: C: convert entrez ID to miRNA
... Why don't you try STAR and FeatureCounts then DESEQ2 ? ...
written 5 months ago by k.kathirvel93200
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Comment: C: convert entrez ID to miRNA
... Which tool you are using for Quantification? ...
written 5 months ago by k.kathirvel93200
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Can anyone suggest me "How to predict smallRNAs from p.aeruginosa whole genome data"?
... Hi EveryOne, I Have 5 *P.aeruginosa* Complete NGS whole genome data and I am trying predict smallRNAs from it. The raw data was assembled and annotated. Already I tried BSRD I got 80 smallRNAs but the database was updated very long back. So, now I trying manually, till now I have extracted intergen ...
genome next-gen sequence sequencing written 5 months ago by k.kathirvel93200 • updated 5 months ago by Biostar ♦♦ 20
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how to find RT- qPCR data for perticular SEQC RNA-seq data set?
... Hi EveryOne... I have downloaded the replicates of MAQC RNA datasets from `https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE47792` IDs : GSM1156797 SEQC_ILM_BGI_A_1_L01_ATCACG_AC0AYTACXX GSM1156798 SEQC_ILM_BGI_A_1_L01_ATCACG_BC0AYPACXX GSM1156813 SEQC_ILM_BGI_A_2_L01_ACAGTG_AC0AYTACXX G ...
genome next-gen rna-seq written 8 months ago by k.kathirvel93200
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Comment: C: Volcano_plot using R
... Can you mention which tool you have used for DE? Why don't you use FDR value instead od PValue? and can you explain that how the plot shoul be ? ...
written 8 months ago by k.kathirvel93200
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Answer: C: Volcano_plot using R
... Its `log2FoldChanges` not `log2FoldChange` in your code. ...
written 8 months ago by k.kathirvel93200
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Comment: C: Parsnp Error. Why?
... Can anyOne answer/Help this ? ...
written 8 months ago by k.kathirvel93200
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Comment: C: Parsnp Error. Why?
... Hi finswimmer, I have downloaded the `.tar` package directly from the official page. ...
written 9 months ago by k.kathirvel93200
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Parsnp Error. Why?
... Hi EveryOne, I am using Parsnp to extract all the core geome SNPs from my bacterial genomes. Here is the command line `./parsnp -g ref/PAO1.gbk -d Parsnp/ -p 8 -c -o Output/`. But I got a error like this Traceback (most recent call last): File "", line 624, in NameError: name 'nam ...
software error genome next-gen snp written 9 months ago by k.kathirvel93200

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