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553
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Extracting list of mutations from .tsv file and arrange them in protein specific with binary 0 (Absent) and 1 (Present) values
bash scripting awk Python
3.0 years ago by k.kathirvel93 ▴ 310
1
vote
3
replies
929
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Merge two .fastq files from two different lane
loop NGS merge fastq cat
updated 3.2 years ago by 151k • written 3.2 years ago by ▴ 310
1
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4
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1.4k
views
Where I can get pipeline for covid genome assembly?
pipeline assembly Covid genome
updated 3.3 years ago by 9.0k • written 3.3 years ago by ▴ 310
0
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1
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898
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How to obtain consensus fasta sequence from fasta file converted from BAM file?
Assembly fasta BAMtofasta
updated 3.3 years ago by 21k • written 3.3 years ago by ▴ 310
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899
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Comment: Comment: Bowtie BAM to Fasta extraction: Only mapped reads in single contig
3.3 years ago by k.kathirvel93 ▴ 310
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2
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899
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Bowtie BAM to Fasta extraction: Only mapped reads in single contig
genome BAM fasta assembly Covid
3.3 years ago by k.kathirvel93 ▴ 310
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0
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3.4k
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Comment: Comment: How can i get gene name instead of gene ID from prepDE.py after STRINGtie?
3.8 years ago by k.kathirvel93 ▴ 310
8
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10
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3.3k
views
How to remove sequence reads contains more than 1 X from multifasta file?
sequence sequencing
updated 5.0 years ago by ▴ 100 • written 5.0 years ago by ▴ 310
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2
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3.3k
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Comment: C: How to remove sequence reads contains more than 1 X from multifasta file?
5.0 years ago by k.kathirvel93 ▴ 310
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0
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3.3k
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Comment: C: How to remove sequence reads contains more than 1 X from multifasta file?
5.0 years ago by k.kathirvel93 ▴ 310
1
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4
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3.2k
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Phylogenetic tree construction from MAFFT aligned large genome dataset ?
alignment sequence genome
updated 5.0 years ago by ▴ 640 • written 5.0 years ago by ▴ 310
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1
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1.7k
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Comment: C: how to remove specific sequences from multi-fasta file which contains N ?
5.0 years ago by k.kathirvel93 ▴ 310
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3
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1.7k
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how to remove specific sequences from multi-fasta file which contains N ?
genome sequencing sequence alignment
5.0 years ago by k.kathirvel93 ▴ 310
0
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1
reply
541
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extract only reads repeated more than 10 times from BLASTp excel sheet output
Assembly alignment sequence
5.0 years ago by k.kathirvel93 ▴ 310
0
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1
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3.4k
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Comment: C: How to extract sequences from multi fasta file, which contains specific primers?
5.1 years ago by k.kathirvel93 ▴ 310
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1
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3.4k
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Comment: C: How to extract sequences from multi fasta file, which contains specific primers?
5.1 years ago by k.kathirvel93 ▴ 310
3
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2
replies
1.8k
views
Sort header from the multifasta sequnce file into only gene name
genome alignment sequencing sequence gene
updated 5.1 years ago by ▴ 200 • written 5.1 years ago by ▴ 310
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1
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3.4k
views
Comment: C: How to extract sequences from multi fasta file, which contains specific primers?
5.1 years ago by k.kathirvel93 ▴ 310
4
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7
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3.4k
views
How to extract sequences from multi fasta file, which contains specific primers?
Assembly genome next-gen sequencing sequence
updated 5.1 years ago by 4.1k • written 5.1 years ago by ▴ 310
0
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0
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744
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Can anyone suggest me "How to predict smallRNAs from p.aeruginosa whole genome data"?
genome next-gen sequencing sequence
updated 6.0 years ago by 20 • written 6.0 years ago by ▴ 310
0
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1
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1.3k
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How to label Phage, resistance and virulence genes name in BRIG blast ring ?
genome next-gen sequencing sequence gene
6.0 years ago by k.kathirvel93 ▴ 310
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0
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1.2k
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Comment: C: convert entrez ID to miRNA
6.0 years ago by k.kathirvel93 ▴ 310
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0
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1.2k
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Comment: C: convert entrez ID to miRNA
6.0 years ago by k.kathirvel93 ▴ 310
0
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0
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806
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how to find RT- qPCR data for perticular SEQC RNA-seq data set?
RNA-Seq rna-seq next-gen genome
6.2 years ago by k.kathirvel93 ▴ 310
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1
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14k
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Comment: C: Volcano_plot using R
6.2 years ago by k.kathirvel93 ▴ 310
1
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1
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14k
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Answer: C: Volcano_plot using R
6.2 years ago by k.kathirvel93 ▴ 310
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0
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2.0k
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Comment: C: Parsnp Error. Why?
6.2 years ago by k.kathirvel93 ▴ 310
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0
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2.0k
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Comment: C: Parsnp Error. Why?
6.3 years ago by k.kathirvel93 ▴ 310
1
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3
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2.0k
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Parsnp Error. Why?
SNP software error next-gen snp genome
6.3 years ago by k.kathirvel93 ▴ 310
0
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1
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3.9k
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Answer: A: Can logCPM in edgeR be used to compare expression of genes ?
6.3 years ago by k.kathirvel93 ▴ 310
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1
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1.7k
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Comment: C: How can I extract SNP from bacterial genome?
6.3 years ago by k.kathirvel93 ▴ 310
0
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4
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1.7k
views
How can I extract SNP from bacterial genome?
snp next-gen sequencing gene genome
updated 6.3 years ago by ▴ 140 • written 6.3 years ago by ▴ 310
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1
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2.1k
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Comment: C: target gene selection for miRNA
6.4 years ago by k.kathirvel93 ▴ 310
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0
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1.4k
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Comment: C: sorting columns by same values to do DEG analysis
6.4 years ago by k.kathirvel93 ▴ 310
1
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0
replies
1.2k
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Comment: C: How to extract information from RNA-seq data?
6.4 years ago by k.kathirvel93 ▴ 310
0
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1
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1.2k
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Answer: A: How to extract information from RNA-seq data?
6.4 years ago by k.kathirvel93 ▴ 310
2
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5
replies
1.7k
views
Suggestions needed for mIRNA-human target prediction ?
rna-seq next-gen gene
updated 6.4 years ago by • 0 • written 6.4 years ago by ▴ 310
1
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1
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1.7k
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Comment: C: Suggestions needed for mIRNA-human target prediction ?
6.4 years ago by k.kathirvel93 ▴ 310
1
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2
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1.7k
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Comment: C: How to remove special characters from text files?
6.4 years ago by k.kathirvel93 ▴ 310
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0
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1.9k
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Comment: C: miRNA mRNA interaction studies
6.4 years ago by k.kathirvel93 ▴ 310
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1
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1.9k
views
Comment: C: miRNA mRNA interaction studies
6.4 years ago by k.kathirvel93 ▴ 310
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1
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1.9k
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Comment: C: miRNA mRNA interaction studies
6.4 years ago by k.kathirvel93 ▴ 310
20
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11
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3.0k
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miRNA-seq DE analysis with duplicate replicates. Am i correct?
R next-gen
updated 6.4 years ago by ▴ 50 • written 6.4 years ago by ▴ 310
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2
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3.0k
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Comment: A: miRNA-seq DE analysis with duplicate replicates. Am i correct?
6.4 years ago by k.kathirvel93 ▴ 310
0
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0
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3.6k
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Comment: C: Differential expression analysis on miRNA count files
6.5 years ago by k.kathirvel93 ▴ 310
0
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2
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6.9k
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Comment: C: BLAST all against all
6.5 years ago by k.kathirvel93 ▴ 310
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1
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2.9k
views
Comment: A: Primer design from mapping file ?
6.5 years ago by k.kathirvel93 ▴ 310
1
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6
replies
5.2k
views
How to extract unique values between columns in R ?
R gene
updated 6.5 years ago by ▴ 730 • written 6.5 years ago by ▴ 310
0
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0
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5.2k
views
Comment: C: How to extract unique values between columns in R ?
6.5 years ago by k.kathirvel93 ▴ 310
0
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0
replies
12k
views
Comment: C: SRA files bulk downloads
6.5 years ago by k.kathirvel93 ▴ 310
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