Moderator: karl.stamm

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karl.stamm3.2k
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Posts by karl.stamm

<prev • 422 results • page 1 of 43 • next >
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Answer: A: MYH2 gene mutation location
... NM_017534 is on the reverse strand, so that CTC you're seeing on the genome is GAG on the transcript. You can see the little arrows go left in the intron of the alternate isoform, and the conservation track shows a lot in the right-most bases, indicating theyre the high order bit. And if you zoom o ...
written 18 days ago by karl.stamm3.2k
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Answer: A: BRIG: How to generate high resolution image
... Page 50 of the BRIG manual has a section called "Setting Image options" If those aren't enough, it is open source and you would have to hack it to do your preferred file format. ...
written 4 weeks ago by karl.stamm3.2k
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Comment: C: GC bias between samples tolerance in RNAseq?
... You've got bigger problems than GC content if you're trying to compare RNASeq between two different genomes. What is the experimental design? ...
written 5 weeks ago by karl.stamm3.2k
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Comment: C: Please decribe steps of getting these answers
... Try reading the textbook that accompanies your course. ...
written 10 weeks ago by karl.stamm3.2k
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Comment: C: File location vs path
... What are you talking about? "The object File" is about a vague as anything can be. ...
written 5 months ago by karl.stamm3.2k
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Comment: C: HeLa reference fasta
... According to the most comprehensive review of the HeLa genome I've seen, it's not a small change between it and hg19. It's a completely rearranged cell line. https://www.ncbi.nlm.nih.gov/pubmed/23550136 ...
written 5 months ago by karl.stamm3.2k
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Comment: C: How to convince the replication in RNAseq
... You need to find out the source of the RNA. The question of biological replicates or technical replicates is very important and due to the source material. Where did the (each of six) RNA come from? Your collaborators will know if they are the same cells or different. Pearson correlation is irrele ...
written 6 months ago by karl.stamm3.2k
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Comment: C: To find Single Nucleotide polymorphism
... You forgot to ask a question. ...
written 6 months ago by karl.stamm3.2k
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Comment: C: NCBI BLAST on AWS
... I don't know a lot of python, but is there a chance "while i < num_rows + 1" is doing the < before the +1, and converting while(false+1) into an infinite loop? Anyway, why not log into the remote instance with a terminal and look at what it's doing instead of using any local python at all? ...
written 7 months ago by karl.stamm3.2k
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Comment: C: Merging two datasets related to protiens and calculating the molec weight
... You're doing an awful lot of different thing at the same time. To be effective in problem solving we ahve to break it down to smaller tasks. Find where the problem really lies. Is this a coding/variables problem, or an algorithmic problem? R can be funny with variable scoping, so don't try to do ...
written 7 months ago by karl.stamm3.2k

Latest awards to karl.stamm

Good Answer 9 weeks ago, created an answer that was upvoted at least 5 times. For A: Correlated standard errors in DESeq2
Appreciated 3 months ago, created a post with more than 5 votes. For C: Why academic software is hard to install?
Teacher 5 months ago, created an answer with at least 3 up-votes. For A: multithreading in psiblast
Appreciated 6 months ago, created a post with more than 5 votes. For C: Why academic software is hard to install?
Commentator 9 months ago, created a comment with at least 3 up-votes. For C: Pathway Graphs for gene set from RNA-seq
Teacher 9 months ago, created an answer with at least 3 up-votes. For A: multithreading in psiblast
Scholar 9 months ago, created an answer that has been accepted. For A: Is LOESS normalization done to each sample independently?
Teacher 12 months ago, created an answer with at least 3 up-votes. For A: multithreading in psiblast
Commentator 16 months ago, created a comment with at least 3 up-votes. For C: Pathway Graphs for gene set from RNA-seq
Commentator 17 months ago, created a comment with at least 3 up-votes. For C: Pathway Graphs for gene set from RNA-seq
Appreciated 17 months ago, created a post with more than 5 votes. For C: Why academic software is hard to install?
Commentator 19 months ago, created a comment with at least 3 up-votes. For C: Pathway Graphs for gene set from RNA-seq
Teacher 20 months ago, created an answer with at least 3 up-votes. For A: multithreading in psiblast
Scholar 20 months ago, created an answer that has been accepted. For A: Is LOESS normalization done to each sample independently?
Good Answer 20 months ago, created an answer that was upvoted at least 5 times. For A: Correlated standard errors in DESeq2
Appreciated 20 months ago, created a post with more than 5 votes. For C: Why academic software is hard to install?
Teacher 20 months ago, created an answer with at least 3 up-votes. For A: multithreading in psiblast
Appreciated 22 months ago, created a post with more than 5 votes. For C: Why academic software is hard to install?
Appreciated 22 months ago, created a post with more than 5 votes. For C: Why academic software is hard to install?
Commentator 23 months ago, created a comment with at least 3 up-votes. For C: Pathway Graphs for gene set from RNA-seq
Commentator 2.0 years ago, created a comment with at least 3 up-votes. For C: Pathway Graphs for gene set from RNA-seq
Scholar 2.1 years ago, created an answer that has been accepted. For A: Is LOESS normalization done to each sample independently?
Teacher 2.1 years ago, created an answer with at least 3 up-votes. For A: multithreading in psiblast
Teacher 2.2 years ago, created an answer with at least 3 up-votes. For A: multithreading in psiblast
Appreciated 2.2 years ago, created a post with more than 5 votes. For C: Entropy Of Dna Sequences

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