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Comment:
Comment: Concatenating fastq for the same sample or doing it separately and merge at the
11 months ago by
jomo018
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1.5k
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Comment:
Comment: Encode project signal p-value
11 months ago by
jomo018
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1.4k
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Comment:
Comment: cellranger count aggregated to transcripts
2.8 years ago by
jomo018
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Comment:
C: A list of human cell cycle genes for Seurat
3.8 years ago by
jomo018
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15k
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Comment:
C: type='apeglm' shrinkage only for use with 'coef'
3.8 years ago by
jomo018
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1
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2.1k
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Comment:
C: Question: can not obtain DESeq2 results
3.8 years ago by
jomo018
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4.9k
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Comment:
C: Classic threshold for log2 fold change in RNA-seq experiment
3.8 years ago by
jomo018
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3.3k
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Comment:
C: Deterimining overall number of differentially expressed genes between WT and KO
3.8 years ago by
jomo018
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3.3k
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Comment:
C: Deterimining overall number of differentially expressed genes between WT and KO
3.8 years ago by
jomo018
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Comment:
C: Relative variance in PCA of scaled data of scRNA-Seq
3.9 years ago by
jomo018
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7.8k
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Comment:
C: Remove ensembl identifiers from Seurat
3.9 years ago by
jomo018
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7.8k
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Comment:
C: Remove ensembl identifiers from Seurat
3.9 years ago by
jomo018
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7.8k
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Comment:
C: Relative variance in PCA of scaled data of scRNA-Seq
3.9 years ago by
jomo018
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3.6k
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Comment:
C: Statistical test for overlap
3.9 years ago by
jomo018
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1
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2.1k
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Comment:
C: Seurat FeaturePlot across stims
4.0 years ago by
jomo018
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8.7k
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Comment:
C: GSEA PreRanked lists from DESeq2 results table
4.3 years ago by
jomo018
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2.0k
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Comment:
C: RNAseq differential expression analysis : no significative FDR but significative
4.6 years ago by
jomo018
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3.3k
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Comment:
C: DESeq2: (1) Comparing multiple groups using a for loop & (2) normalization of ti
4.6 years ago by
jomo018
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1.6k
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Comment:
C: subsetting matrix elements and creating a histogram
4.6 years ago by
jomo018
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1.6k
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Comment:
C: subsetting matrix elements and creating a histogram
4.6 years ago by
jomo018
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1.6k
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Comment:
C: RRBS Methylation integration with RNA-seq differential expression
4.8 years ago by
jomo018
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3.4k
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Comment:
C: FASTQ alignment result is really bad
5.4 years ago by
jomo018
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6.2k
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Comment:
C: log vs square-root transformation
5.5 years ago by
jomo018
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2.3k
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Comment:
C: salmon - tximport - deseq2 gene level workflow
5.5 years ago by
jomo018
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2.9k
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Comment:
C: Mouse Enhancers Database/ Mouse Enhancer annotation
5.5 years ago by
jomo018
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4.2k
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Comment:
C: Error using bedtools "intersect" command
5.6 years ago by
jomo018
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1
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4.2k
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Comment:
C: Error using bedtools "intersect" command
5.6 years ago by
jomo018
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4.0k
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Comment:
C: Salmon error message
5.6 years ago by
jomo018
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1
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1
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4.2k
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Comment:
C: Illegal Division by zero
5.6 years ago by
jomo018
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1
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1
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4.2k
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Comment:
C: Illegal Division by zero
5.6 years ago by
jomo018
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1
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5.2k
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Comment:
C: How to append the cell barcode and UMI information to the fastq header in paired
5.7 years ago by
jomo018
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0
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1
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2.6k
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Comment:
C: De-multiplex of no illumina index RNAseq libraries on Novaseq
5.7 years ago by
jomo018
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0
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1
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1.4k
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Comment:
C: Which DE genes should be included in pathway search
5.7 years ago by
jomo018
▴ 720
0
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1
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1.4k
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Comment:
C: Which DE genes should be included in pathway search
5.7 years ago by
jomo018
▴ 720
0
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1
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1.4k
views
Comment:
C: Which DE genes should be included in pathway search
5.7 years ago by
jomo018
▴ 720
0
votes
1
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3.8k
views
Comment:
C: Why does read quality drop after adapter trimming with cutadapt?
6.1 years ago by
jomo018
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1
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3.7k
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Comment:
C: bedtools fisher interpretation of "in -a" "not in -b"
6.2 years ago by
jomo018
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0
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1
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3.7k
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Comment:
C: bedtools fisher interpretation of "in -a" "not in -b"
6.2 years ago by
jomo018
▴ 720
0
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1
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3.7k
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Comment:
C: bedtools fisher interpretation of "in -a" "not in -b"
6.2 years ago by
jomo018
▴ 720
0
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1
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3.7k
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Comment:
C: bedtools fisher interpretation of "in -a" "not in -b"
6.2 years ago by
jomo018
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1
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1
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2.8k
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Comment:
C: fastq parsing inefficiencies with python
6.3 years ago by
jomo018
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2
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2.8k
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Comment:
C: fastq parsing inefficiencies with python
6.3 years ago by
jomo018
▴ 720
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0
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1.9k
views
Comment:
C: split seq in fasta file in groups according to seq similarity?
6.3 years ago by
jomo018
▴ 720
0
votes
0
replies
1.1k
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Comment:
C: What is special in a BED file
6.3 years ago by
jomo018
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0
votes
1
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5.0k
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Comment:
C: Problem with methylKit and Bismark
6.3 years ago by
jomo018
▴ 720
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votes
0
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5.0k
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Comment:
C: vcf2bed giving empty bed file as output
6.3 years ago by
jomo018
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votes
0
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3.1k
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Comment:
C: Converting TCGA Bam files to fastq: Picard does not work!
6.8 years ago by
jomo018
▴ 720
0
votes
1
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3.1k
views
Comment:
C: Converting TCGA Bam files to fastq: Picard does not work!
6.8 years ago by
jomo018
▴ 720
4
votes
1
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4.4k
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Comment:
C: Why not merging?
6.8 years ago by
jomo018
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0
votes
1
reply
1.5k
views
Comment:
C: spliced alignment algorithm
6.8 years ago by
jomo018
▴ 720
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