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695
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Answer: A: "Idents" can not be use in seurat
9 months ago by jomo018 ▴ 610
0
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0
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2.3k
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Comment: C: A list of human cell cycle genes for Seurat
10 months ago by jomo018 ▴ 610
0
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0
replies
2.7k
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Comment: C: type='apeglm' shrinkage only for use with 'coef'
10 months ago by jomo018 ▴ 610
0
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1
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622
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Comment: C: Question: can not obtain DESeq2 results
10 months ago by jomo018 ▴ 610
1
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0
replies
617
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Comment: C: Classic threshold for log2 fold change in RNA-seq experiment
10 months ago by jomo018 ▴ 610
0
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1
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535
views
Comment: C: Deterimining overall number of differentially expressed genes between WT and KO
10 months ago by jomo018 ▴ 610
0
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0
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535
views
Comment: C: Deterimining overall number of differentially expressed genes between WT and KO
10 months ago by jomo018 ▴ 610
2
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2
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535
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Answer: A: Deterimining overall number of differentially expressed genes between WT and KO
10 months ago by jomo018 ▴ 610
0
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0
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313
views
Comment: C: Relative variance in PCA of scaled data of scRNA-Seq
10 months ago by jomo018 ▴ 610
0
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0
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1.2k
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Comment: C: Remove ensembl identifiers from Seurat
10 months ago by jomo018 ▴ 610
0
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0
replies
1.2k
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Comment: C: Remove ensembl identifiers from Seurat
10 months ago by jomo018 ▴ 610
0
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2
replies
313
views
Comment: C: Relative variance in PCA of scaled data of scRNA-Seq
10 months ago by jomo018 ▴ 610
0
votes
1
reply
1.2k
views
Answer: A: Remove ensembl identifiers from Seurat
10 months ago by jomo018 ▴ 610
1
vote
5
replies
313
views
Relative variance in PCA of scaled data of scRNA-Seq
variance scRNA-Seq Seurat PCA
10 months ago by jomo018 ▴ 610
0
votes
0
replies
471
views
Comment: C: Statistical test for overlap
11 months ago by jomo018 ▴ 610
1
vote
1
reply
756
views
Comment: C: Seurat FeaturePlot across stims
12 months ago by jomo018 ▴ 610
0
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1
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881
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Seurat integrated analysis - methods for cell-type specific responses
RNA-Seq Single-Cell differential-expression
13 months ago by jomo018 ▴ 610
0
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0
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2.3k
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Comment: C: GSEA PreRanked lists from DESeq2 results table
15 months ago by jomo018 ▴ 610
2
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1
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2.3k
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Answer: A: GSEA PreRanked lists from DESeq2 results table
15 months ago by jomo018 ▴ 610
3
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1
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7.3k
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Answer: A: Illumina paired-end reads R1 and R2 mixed together?
17 months ago by jomo018 ▴ 610
2
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1
reply
549
views
Answer: C: RRBS analysis using methylkit with 2 variables
18 months ago by jomo018 ▴ 610
3
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1
reply
631
views
Answer: C: Maths implications: log2 transformation before or after normalisation
18 months ago by jomo018 ▴ 610
1
vote
1
reply
569
views
Comment: C: RNAseq differential expression analysis : no significative FDR but significative
18 months ago by jomo018 ▴ 610
0
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0
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1.4k
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Comment: C: DESeq2: (1) Comparing multiple groups using a for loop & (2) normalization of ti
19 months ago by jomo018 ▴ 610
0
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1
reply
669
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Comment: C: subsetting matrix elements and creating a histogram
19 months ago by jomo018 ▴ 610
0
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1
reply
669
views
Comment: C: subsetting matrix elements and creating a histogram
19 months ago by jomo018 ▴ 610
0
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1
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722
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Comment: C: RRBS Methylation integration with RNA-seq differential expression
22 months ago by jomo018 ▴ 610
11
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31
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4.5k
views
6 follow
De-duplicate UMI at FASTQ level
UMI fastq
updated 2.3 years ago by ▴ 40 • written 2.6 years ago by ▴ 610
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0
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1.2k
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Comment: C: FASTQ alignment result is really bad
2.4 years ago by jomo018 ▴ 610
1
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0
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3.2k
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Comment: C: log vs square-root transformation
2.5 years ago by jomo018 ▴ 610
0
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0
replies
1.3k
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Comment: C: salmon - tximport - deseq2 gene level workflow
2.5 years ago by jomo018 ▴ 610
0
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2
replies
1.3k
views
salmon - tximport - deseq2 gene level workflow
RNA-Seq salmon deseq2 tximport
2.5 years ago by jomo018 ▴ 610
1
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0
replies
3.5k
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Answer: A: How to extract unique values between columns in R ?
2.5 years ago by jomo018 ▴ 610
0
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0
replies
1.9k
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Comment: C: Mouse Enhancers Database/ Mouse Enhancer annotation
2.5 years ago by jomo018 ▴ 610
0
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0
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1.9k
views
Answer: A: Mouse Enhancers Database/ Mouse Enhancer annotation
2.5 years ago by jomo018 ▴ 610
0
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3
replies
9.1k
views
Answer: C: TypeError: 'str' object is not callable
updated 2.6 years ago by 33k • written 2.6 years ago by ▴ 610
0
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0
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1.6k
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Comment: C: Error using bedtools "intersect" command
2.6 years ago by jomo018 ▴ 610
1
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1
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1.6k
views
Comment: C: Error using bedtools "intersect" command
2.6 years ago by jomo018 ▴ 610
0
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1
reply
1.9k
views
Answer: A: Salmon (error: SAM file and fasta file have different transcript length)
2.6 years ago by jomo018 ▴ 610
1
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0
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1.8k
views
Comment: C: Salmon error message
2.6 years ago by jomo018 ▴ 610
3
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0
replies
26k
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Answer: A: Fold change - a final explanation
2.6 years ago by jomo018 ▴ 610
2
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0
replies
5.4k
views
Answer: A: giving a color to null values on heatmap2
2.6 years ago by jomo018 ▴ 610
1
vote
1
reply
1.9k
views
Comment: C: Illegal Division by zero
2.7 years ago by jomo018 ▴ 610
1
vote
1
reply
1.9k
views
Comment: C: Illegal Division by zero
2.7 years ago by jomo018 ▴ 610
0
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1
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2.5k
views
Comment: C: How to append the cell barcode and UMI information to the fastq header in paired
2.7 years ago by jomo018 ▴ 610
0
votes
1
reply
815
views
Comment: C: De-multiplex of no illumina index RNAseq libraries on Novaseq
2.7 years ago by jomo018 ▴ 610
1
vote
0
replies
1.0k
views
Answer: A: Extract start coordinate from read 1 and end coordinate from read 2 of paired en
2.7 years ago by jomo018 ▴ 610
0
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1
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583
views
Comment: C: Which DE genes should be included in pathway search
2.7 years ago by jomo018 ▴ 610
0
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1
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583
views
Comment: C: Which DE genes should be included in pathway search
2.7 years ago by jomo018 ▴ 610
0
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1
reply
583
views
Comment: C: Which DE genes should be included in pathway search
2.7 years ago by jomo018 ▴ 610
103 results • Page 1 of 3
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