Latest
Open
Jobs
Tutorials
Tags
About
FAQ
Community
Planet
New Post
Log In
New Post
Latest
Open
News
Jobs
Tutorials
Forum
Tags
Planet
Users
Log In
Sign Up
About
Profile
Posts
Awards
Show
all
questions
tools
blogs
news
tutorials
forum
answers
comments
1
vote
0
replies
1.8k
views
Comment:
Comment: Concatenating fastq for the same sample or doing it separately and merge at the
17 months ago by
jomo018
▴ 730
1
vote
1
reply
1.9k
views
Comment:
Comment: Encode project signal p-value
18 months ago by
jomo018
▴ 730
4
votes
3
replies
1.9k
views
Encode project signal p-value
ChiP-Seq
p-value
Encode
signal
updated 18 months ago by
rfran010
★ 1.3k • written 18 months ago by
jomo018
▴ 730
1
vote
11
replies
4.0k
views
bedtools fisher interpretation of "in -a" "not in -b"
fisher
bedtools
intersection
updated 21 months ago by
Ram
44k • written 6.7 years ago by
jomo018
▴ 730
1
vote
1
reply
1.2k
views
min.cells in CreateSeuratObject
Seurat
updated 21 months ago by
rpolicastro
13k • written 21 months ago by
jomo018
▴ 730
0
votes
1
reply
1.6k
views
Comment:
Comment: cellranger count aggregated to transcripts
3.3 years ago by
jomo018
▴ 730
0
votes
4
replies
1.6k
views
cellranger count aggregated to transcripts
cellranger
gtf
10x
updated 3.3 years ago by
benformatics
4.0k • written 3.3 years ago by
jomo018
▴ 730
0
votes
0
replies
3.2k
views
Answer:
A: "Idents" can not be use in seurat
4.3 years ago by
jomo018
▴ 730
0
votes
0
replies
5.3k
views
Comment:
C: A list of human cell cycle genes for Seurat
4.3 years ago by
jomo018
▴ 730
0
votes
0
replies
17k
views
Comment:
C: type='apeglm' shrinkage only for use with 'coef'
4.3 years ago by
jomo018
▴ 730
0
votes
1
reply
2.5k
views
Comment:
C: Question: can not obtain DESeq2 results
4.3 years ago by
jomo018
▴ 730
1
vote
0
replies
6.4k
views
Comment:
C: Classic threshold for log2 fold change in RNA-seq experiment
4.3 years ago by
jomo018
▴ 730
0
votes
1
reply
3.6k
views
Comment:
C: Deterimining overall number of differentially expressed genes between WT and KO
4.4 years ago by
jomo018
▴ 730
0
votes
0
replies
3.6k
views
Comment:
C: Deterimining overall number of differentially expressed genes between WT and KO
4.4 years ago by
jomo018
▴ 730
3
votes
2
replies
3.6k
views
Answer:
A: Deterimining overall number of differentially expressed genes between WT and KO
4.4 years ago by
jomo018
▴ 730
0
votes
0
replies
8.2k
views
Comment:
C: Relative variance in PCA of scaled data of scRNA-Seq
4.4 years ago by
jomo018
▴ 730
0
votes
0
replies
9.0k
views
Comment:
C: Remove ensembl identifiers from Seurat
4.4 years ago by
jomo018
▴ 730
0
votes
0
replies
9.0k
views
Comment:
C: Remove ensembl identifiers from Seurat
4.4 years ago by
jomo018
▴ 730
0
votes
2
replies
8.2k
views
Comment:
C: Relative variance in PCA of scaled data of scRNA-Seq
4.4 years ago by
jomo018
▴ 730
0
votes
1
reply
9.0k
views
Answer:
A: Remove ensembl identifiers from Seurat
4.4 years ago by
jomo018
▴ 730
1
vote
5
replies
8.2k
views
Relative variance in PCA of scaled data of scRNA-Seq
variance
scRNA-Seq
Seurat
PCA
4.4 years ago by
jomo018
▴ 730
0
votes
0
replies
4.2k
views
Comment:
C: Statistical test for overlap
4.4 years ago by
jomo018
▴ 730
1
vote
1
reply
2.2k
views
Comment:
C: Seurat FeaturePlot across stims
4.5 years ago by
jomo018
▴ 730
0
votes
1
reply
1.9k
views
Seurat integrated analysis - methods for cell-type specific responses
RNA-Seq
Single-Cell
differential-expression
4.6 years ago by
jomo018
▴ 730
0
votes
0
replies
9.6k
views
Comment:
C: GSEA PreRanked lists from DESeq2 results table
4.8 years ago by
jomo018
▴ 730
2
votes
1
reply
9.6k
views
Answer:
A: GSEA PreRanked lists from DESeq2 results table
4.8 years ago by
jomo018
▴ 730
3
votes
1
reply
16k
views
Answer:
A: Illumina paired-end reads R1 and R2 mixed together?
4.9 years ago by
jomo018
▴ 730
2
votes
1
reply
1.6k
views
Answer:
C: RRBS analysis using methylkit with 2 variables
5.0 years ago by
jomo018
▴ 730
5
votes
1
reply
8.1k
views
Answer:
C: Maths implications: log2 transformation before or after normalisation
5.0 years ago by
jomo018
▴ 730
1
vote
1
reply
2.3k
views
Comment:
C: RNAseq differential expression analysis : no significative FDR but significative
5.1 years ago by
jomo018
▴ 730
0
votes
0
replies
3.6k
views
Comment:
C: DESeq2: (1) Comparing multiple groups using a for loop & (2) normalization of ti
5.1 years ago by
jomo018
▴ 730
0
votes
1
reply
1.8k
views
Comment:
C: subsetting matrix elements and creating a histogram
5.1 years ago by
jomo018
▴ 730
0
votes
1
reply
1.8k
views
Comment:
C: subsetting matrix elements and creating a histogram
5.1 years ago by
jomo018
▴ 730
0
votes
1
reply
1.7k
views
Comment:
C: RRBS Methylation integration with RNA-seq differential expression
5.3 years ago by
jomo018
▴ 730
15
votes
31
replies
14k
views
6 follow
De-duplicate UMI at FASTQ level
UMI
fastq
updated 5.8 years ago by
Rituriya
▴ 40 • written 6.1 years ago by
jomo018
▴ 730
0
votes
0
replies
3.9k
views
Comment:
C: FASTQ alignment result is really bad
5.9 years ago by
jomo018
▴ 730
1
vote
0
replies
6.5k
views
Comment:
C: log vs square-root transformation
6.0 years ago by
jomo018
▴ 730
0
votes
0
replies
2.4k
views
Comment:
C: salmon - tximport - deseq2 gene level workflow
6.0 years ago by
jomo018
▴ 730
0
votes
2
replies
2.4k
views
salmon - tximport - deseq2 gene level workflow
RNA-Seq
salmon
deseq2
tximport
6.0 years ago by
jomo018
▴ 730
1
vote
0
replies
4.9k
views
Answer:
A: How to extract unique values between columns in R ?
6.0 years ago by
jomo018
▴ 730
0
votes
0
replies
3.1k
views
Comment:
C: Mouse Enhancers Database/ Mouse Enhancer annotation
6.0 years ago by
jomo018
▴ 730
0
votes
0
replies
3.1k
views
Answer:
A: Mouse Enhancers Database/ Mouse Enhancer annotation
6.0 years ago by
jomo018
▴ 730
0
votes
3
replies
14k
views
Answer:
C: TypeError: 'str' object is not callable
updated 6.1 years ago by
Ram
44k • written 6.1 years ago by
jomo018
▴ 730
0
votes
0
replies
4.7k
views
Comment:
C: Error using bedtools "intersect" command
6.1 years ago by
jomo018
▴ 730
1
vote
1
reply
4.7k
views
Comment:
C: Error using bedtools "intersect" command
6.1 years ago by
jomo018
▴ 730
0
votes
1
reply
4.8k
views
Answer:
A: Salmon (error: SAM file and fasta file have different transcript length)
6.1 years ago by
jomo018
▴ 730
1
vote
0
replies
4.3k
views
Comment:
C: Salmon error message
6.1 years ago by
jomo018
▴ 730
5
votes
0
replies
140k
views
Answer:
A: Fold change - a final explanation
6.1 years ago by
jomo018
▴ 730
2
votes
0
replies
12k
views
Answer:
A: giving a color to null values on heatmap2
6.1 years ago by
jomo018
▴ 730
1
vote
1
reply
4.5k
views
Comment:
C: Illegal Division by zero
6.1 years ago by
jomo018
▴ 730
109 results • Page
1 of 3
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6