Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
1
vote
0
replies
1.2k
views
Comment: Comment: Concatenating fastq for the same sample or doing it separately and merge at the
11 months ago by jomo018 ▴ 720
1
vote
1
reply
1.5k
views
Comment: Comment: Encode project signal p-value
11 months ago by jomo018 ▴ 720
4
votes
3
replies
1.5k
views
Encode project signal p-value
ChiP-Seq p-value Encode signal
updated 11 months ago by ▴ 900 • written 11 months ago by ▴ 720
1
vote
11
replies
3.7k
views
bedtools fisher interpretation of "in -a" "not in -b"
fisher bedtools intersection
updated 14 months ago by 43k • written 6.2 years ago by ▴ 720
1
vote
1
reply
1.0k
views
min.cells in CreateSeuratObject
Seurat
updated 15 months ago by 13k • written 15 months ago by ▴ 720
0
votes
1
reply
1.3k
views
Comment: Comment: cellranger count aggregated to transcripts
2.7 years ago by jomo018 ▴ 720
0
votes
4
replies
1.3k
views
cellranger count aggregated to transcripts
cellranger gtf 10x
updated 2.7 years ago by 3.9k • written 2.7 years ago by ▴ 720
0
votes
0
replies
2.9k
views
Answer: A: "Idents" can not be use in seurat
3.7 years ago by jomo018 ▴ 720
0
votes
0
replies
4.9k
views
Comment: C: A list of human cell cycle genes for Seurat
3.8 years ago by jomo018 ▴ 720
0
votes
0
replies
15k
views
Comment: C: type='apeglm' shrinkage only for use with 'coef'
3.8 years ago by jomo018 ▴ 720
0
votes
1
reply
2.1k
views
Comment: C: Question: can not obtain DESeq2 results
3.8 years ago by jomo018 ▴ 720
1
vote
0
replies
4.8k
views
Comment: C: Classic threshold for log2 fold change in RNA-seq experiment
3.8 years ago by jomo018 ▴ 720
0
votes
1
reply
3.3k
views
Comment: C: Deterimining overall number of differentially expressed genes between WT and KO
3.8 years ago by jomo018 ▴ 720
0
votes
0
replies
3.3k
views
Comment: C: Deterimining overall number of differentially expressed genes between WT and KO
3.8 years ago by jomo018 ▴ 720
3
votes
2
replies
3.3k
views
Answer: A: Deterimining overall number of differentially expressed genes between WT and KO
3.8 years ago by jomo018 ▴ 720
0
votes
0
replies
7.7k
views
Comment: C: Relative variance in PCA of scaled data of scRNA-Seq
3.8 years ago by jomo018 ▴ 720
0
votes
0
replies
7.7k
views
Comment: C: Remove ensembl identifiers from Seurat
3.8 years ago by jomo018 ▴ 720
0
votes
0
replies
7.7k
views
Comment: C: Remove ensembl identifiers from Seurat
3.8 years ago by jomo018 ▴ 720
0
votes
2
replies
7.7k
views
Comment: C: Relative variance in PCA of scaled data of scRNA-Seq
3.8 years ago by jomo018 ▴ 720
0
votes
1
reply
7.7k
views
Answer: A: Remove ensembl identifiers from Seurat
3.8 years ago by jomo018 ▴ 720
1
vote
5
replies
7.7k
views
Relative variance in PCA of scaled data of scRNA-Seq
variance scRNA-Seq Seurat PCA
3.8 years ago by jomo018 ▴ 720
0
votes
0
replies
3.5k
views
Comment: C: Statistical test for overlap
3.8 years ago by jomo018 ▴ 720
1
vote
1
reply
2.0k
views
Comment: C: Seurat FeaturePlot across stims
3.9 years ago by jomo018 ▴ 720
0
votes
1
reply
1.8k
views
Seurat integrated analysis - methods for cell-type specific responses
RNA-Seq Single-Cell differential-expression
4.0 years ago by jomo018 ▴ 720
0
votes
0
replies
8.5k
views
Comment: C: GSEA PreRanked lists from DESeq2 results table
4.2 years ago by jomo018 ▴ 720
2
votes
1
reply
8.5k
views
Answer: A: GSEA PreRanked lists from DESeq2 results table
4.2 years ago by jomo018 ▴ 720
3
votes
1
reply
14k
views
Answer: A: Illumina paired-end reads R1 and R2 mixed together?
4.4 years ago by jomo018 ▴ 720
2
votes
1
reply
1.4k
views
Answer: C: RRBS analysis using methylkit with 2 variables
4.4 years ago by jomo018 ▴ 720
5
votes
1
reply
6.5k
views
Answer: C: Maths implications: log2 transformation before or after normalisation
4.5 years ago by jomo018 ▴ 720
1
vote
1
reply
1.9k
views
Comment: C: RNAseq differential expression analysis : no significative FDR but significative
4.5 years ago by jomo018 ▴ 720
0
votes
0
replies
3.3k
views
Comment: C: DESeq2: (1) Comparing multiple groups using a for loop & (2) normalization of ti
4.5 years ago by jomo018 ▴ 720
0
votes
1
reply
1.6k
views
Comment: C: subsetting matrix elements and creating a histogram
4.5 years ago by jomo018 ▴ 720
0
votes
1
reply
1.6k
views
Comment: C: subsetting matrix elements and creating a histogram
4.5 years ago by jomo018 ▴ 720
0
votes
1
reply
1.5k
views
Comment: C: RRBS Methylation integration with RNA-seq differential expression
4.8 years ago by jomo018 ▴ 720
14
votes
31
replies
13k
views
6 follow
De-duplicate UMI at FASTQ level
UMI fastq
updated 5.3 years ago by ▴ 40 • written 5.5 years ago by ▴ 720
0
votes
0
replies
3.4k
views
Comment: C: FASTQ alignment result is really bad
5.4 years ago by jomo018 ▴ 720
1
vote
0
replies
6.2k
views
Comment: C: log vs square-root transformation
5.4 years ago by jomo018 ▴ 720
0
votes
0
replies
2.3k
views
Comment: C: salmon - tximport - deseq2 gene level workflow
5.4 years ago by jomo018 ▴ 720
0
votes
2
replies
2.3k
views
salmon - tximport - deseq2 gene level workflow
RNA-Seq salmon deseq2 tximport
5.4 years ago by jomo018 ▴ 720
1
vote
0
replies
4.6k
views
Answer: A: How to extract unique values between columns in R ?
5.5 years ago by jomo018 ▴ 720
0
votes
0
replies
2.9k
views
Comment: C: Mouse Enhancers Database/ Mouse Enhancer annotation
5.5 years ago by jomo018 ▴ 720
0
votes
0
replies
2.9k
views
Answer: A: Mouse Enhancers Database/ Mouse Enhancer annotation
5.5 years ago by jomo018 ▴ 720
0
votes
3
replies
13k
views
Answer: C: TypeError: 'str' object is not callable
updated 5.5 years ago by 43k • written 5.5 years ago by ▴ 720
0
votes
0
replies
4.2k
views
Comment: C: Error using bedtools "intersect" command
5.5 years ago by jomo018 ▴ 720
1
vote
1
reply
4.2k
views
Comment: C: Error using bedtools "intersect" command
5.5 years ago by jomo018 ▴ 720
0
votes
1
reply
4.3k
views
Answer: A: Salmon (error: SAM file and fasta file have different transcript length)
5.5 years ago by jomo018 ▴ 720
1
vote
0
replies
4.0k
views
Comment: C: Salmon error message
5.5 years ago by jomo018 ▴ 720
4
votes
0
replies
105k
views
Answer: A: Fold change - a final explanation
5.5 years ago by jomo018 ▴ 720
2
votes
0
replies
11k
views
Answer: A: giving a color to null values on heatmap2
5.6 years ago by jomo018 ▴ 720
1
vote
1
reply
4.1k
views
Comment: C: Illegal Division by zero
5.6 years ago by jomo018 ▴ 720
109 results • Page 1 of 3
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6