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1
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Comment: Comment: Concatenating fastq for the same sample or doing it separately and merge at the
2.1 years ago by jomo018 ▴ 730
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1
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2.5k
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Comment: Comment: Encode project signal p-value
2.1 years ago by jomo018 ▴ 730
4
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3
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2.5k
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Encode project signal p-value
ChiP-Seq p-value Encode signal
updated 2.1 years ago by ★ 1.5k • written 2.1 years ago by ▴ 730
1
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11
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4.5k
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bedtools fisher interpretation of "in -a" "not in -b"
fisher bedtools intersection
updated 2.3 years ago by 45k • written 7.3 years ago by ▴ 730
1
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1
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1.5k
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min.cells in CreateSeuratObject
Seurat
updated 2.4 years ago by 13k • written 2.4 years ago by ▴ 730
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2.1k
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Comment: Comment: cellranger count aggregated to transcripts
3.9 years ago by jomo018 ▴ 730
1
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4
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2.1k
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cellranger count aggregated to transcripts
cellranger gtf 10x
updated 3.9 years ago by 4.1k • written 3.9 years ago by ▴ 730
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3.6k
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Answer: A: "Idents" can not be use in seurat
4.9 years ago by jomo018 ▴ 730
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6.1k
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Comment: C: A list of human cell cycle genes for Seurat
4.9 years ago by jomo018 ▴ 730
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18k
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Comment: C: type='apeglm' shrinkage only for use with 'coef'
4.9 years ago by jomo018 ▴ 730
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1
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2.9k
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Comment: C: Question: can not obtain DESeq2 results
4.9 years ago by jomo018 ▴ 730
1
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0
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8.8k
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Comment: C: Classic threshold for log2 fold change in RNA-seq experiment
5.0 years ago by jomo018 ▴ 730
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1
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4.2k
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Comment: C: Deterimining overall number of differentially expressed genes between WT and KO
5.0 years ago by jomo018 ▴ 730
0
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0
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4.2k
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Comment: C: Deterimining overall number of differentially expressed genes between WT and KO
5.0 years ago by jomo018 ▴ 730
3
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2
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4.2k
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Answer: A: Deterimining overall number of differentially expressed genes between WT and KO
5.0 years ago by jomo018 ▴ 730
0
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0
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8.7k
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Comment: C: Relative variance in PCA of scaled data of scRNA-Seq
5.0 years ago by jomo018 ▴ 730
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0
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11k
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Comment: C: Remove ensembl identifiers from Seurat
5.0 years ago by jomo018 ▴ 730
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0
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11k
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Comment: C: Remove ensembl identifiers from Seurat
5.0 years ago by jomo018 ▴ 730
0
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2
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8.7k
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Comment: C: Relative variance in PCA of scaled data of scRNA-Seq
5.0 years ago by jomo018 ▴ 730
0
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1
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11k
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Answer: A: Remove ensembl identifiers from Seurat
5.0 years ago by jomo018 ▴ 730
1
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5
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8.7k
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Relative variance in PCA of scaled data of scRNA-Seq
variance scRNA-Seq Seurat PCA
5.0 years ago by jomo018 ▴ 730
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0
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5.0k
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Comment: C: Statistical test for overlap
5.0 years ago by jomo018 ▴ 730
1
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1
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2.5k
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Comment: C: Seurat FeaturePlot across stims
5.1 years ago by jomo018 ▴ 730
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1
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2.1k
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Seurat integrated analysis - methods for cell-type specific responses
RNA-Seq Single-Cell differential-expression
5.2 years ago by jomo018 ▴ 730
0
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0
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11k
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Comment: C: GSEA PreRanked lists from DESeq2 results table
5.4 years ago by jomo018 ▴ 730
2
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1
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11k
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Answer: A: GSEA PreRanked lists from DESeq2 results table
5.4 years ago by jomo018 ▴ 730
3
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1
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18k
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Answer: A: Illumina paired-end reads R1 and R2 mixed together?
5.5 years ago by jomo018 ▴ 730
2
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1
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1.8k
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Answer: C: RRBS analysis using methylkit with 2 variables
5.6 years ago by jomo018 ▴ 730
5
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1
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9.9k
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Answer: C: Maths implications: log2 transformation before or after normalisation
5.6 years ago by jomo018 ▴ 730
1
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1
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3.1k
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Comment: C: RNAseq differential expression analysis : no significative FDR but significative
5.7 years ago by jomo018 ▴ 730
0
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0
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3.9k
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Comment: C: DESeq2: (1) Comparing multiple groups using a for loop & (2) normalization of ti
5.7 years ago by jomo018 ▴ 730
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1
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2.1k
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Comment: C: subsetting matrix elements and creating a histogram
5.7 years ago by jomo018 ▴ 730
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1
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2.1k
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Comment: C: subsetting matrix elements and creating a histogram
5.7 years ago by jomo018 ▴ 730
0
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1
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1.9k
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Comment: C: RRBS Methylation integration with RNA-seq differential expression
5.9 years ago by jomo018 ▴ 730
15
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31
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16k
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6 follow
De-duplicate UMI at FASTQ level
UMI fastq
updated 3 months ago by 21k • written 6.7 years ago by ▴ 730
0
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4.7k
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Comment: C: FASTQ alignment result is really bad
6.5 years ago by jomo018 ▴ 730
1
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0
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7.0k
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Comment: C: log vs square-root transformation
6.6 years ago by jomo018 ▴ 730
0
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0
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2.7k
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Comment: C: salmon - tximport - deseq2 gene level workflow
6.6 years ago by jomo018 ▴ 730
0
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2
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2.7k
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salmon - tximport - deseq2 gene level workflow
RNA-Seq salmon deseq2 tximport
6.6 years ago by jomo018 ▴ 730
1
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0
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5.3k
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Answer: A: How to extract unique values between columns in R ?
6.6 years ago by jomo018 ▴ 730
0
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0
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3.3k
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Comment: C: Mouse Enhancers Database/ Mouse Enhancer annotation
6.7 years ago by jomo018 ▴ 730
0
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0
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3.3k
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Answer: A: Mouse Enhancers Database/ Mouse Enhancer annotation
6.7 years ago by jomo018 ▴ 730
0
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3
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14k
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Answer: C: TypeError: 'str' object is not callable
updated 6.7 years ago by 45k • written 6.7 years ago by ▴ 730
0
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0
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5.5k
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Comment: C: Error using bedtools "intersect" command
6.7 years ago by jomo018 ▴ 730
1
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1
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5.5k
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Comment: C: Error using bedtools "intersect" command
6.7 years ago by jomo018 ▴ 730
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1
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5.5k
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Answer: A: Salmon (error: SAM file and fasta file have different transcript length)
6.7 years ago by jomo018 ▴ 730
1
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0
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4.7k
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Comment: C: Salmon error message
6.7 years ago by jomo018 ▴ 730
5
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0
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178k
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Answer: A: Fold change - a final explanation
6.7 years ago by jomo018 ▴ 730
2
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0
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13k
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Answer: A: giving a color to null values on heatmap2
6.7 years ago by jomo018 ▴ 730
1
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1
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5.0k
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Comment: C: Illegal Division by zero
6.8 years ago by jomo018 ▴ 730
109 results • Page 1 of 3
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