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1
vote
11
replies
2.9k
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bedtools fisher interpretation of "in -a" "not in -b"
fisher bedtools intersection
updated 6 weeks ago by 38k • written 5.1 years ago by ▴ 690
1
vote
1
reply
285
views
min.cells in CreateSeuratObject
Seurat
updated 9 weeks ago by 11k • written 9 weeks ago by ▴ 690
0
votes
1
reply
894
views
Comment: Comment: cellranger count aggregated to transcripts
20 months ago by jomo018 ▴ 690
0
votes
4
replies
894
views
cellranger count aggregated to transcripts
cellranger gtf 10x
updated 20 months ago by 3.5k • written 20 months ago by ▴ 690
0
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0
replies
2.1k
views
Answer: A: "Idents" can not be use in seurat
2.7 years ago by jomo018 ▴ 690
0
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0
replies
4.1k
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Comment: C: A list of human cell cycle genes for Seurat
2.7 years ago by jomo018 ▴ 690
0
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0
replies
11k
views
Comment: C: type='apeglm' shrinkage only for use with 'coef'
2.7 years ago by jomo018 ▴ 690
0
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1
reply
1.6k
views
Comment: C: Question: can not obtain DESeq2 results
2.7 years ago by jomo018 ▴ 690
1
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0
replies
3.5k
views
Comment: C: Classic threshold for log2 fold change in RNA-seq experiment
2.7 years ago by jomo018 ▴ 690
0
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1
reply
2.4k
views
Comment: C: Deterimining overall number of differentially expressed genes between WT and KO
2.7 years ago by jomo018 ▴ 690
0
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0
replies
2.4k
views
Comment: C: Deterimining overall number of differentially expressed genes between WT and KO
2.7 years ago by jomo018 ▴ 690
3
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2
replies
2.4k
views
Answer: A: Deterimining overall number of differentially expressed genes between WT and KO
2.7 years ago by jomo018 ▴ 690
0
votes
0
replies
6.9k
views
Comment: C: Relative variance in PCA of scaled data of scRNA-Seq
2.8 years ago by jomo018 ▴ 690
0
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0
replies
5.0k
views
Comment: C: Remove ensembl identifiers from Seurat
2.8 years ago by jomo018 ▴ 690
0
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0
replies
5.0k
views
Comment: C: Remove ensembl identifiers from Seurat
2.8 years ago by jomo018 ▴ 690
0
votes
2
replies
6.9k
views
Comment: C: Relative variance in PCA of scaled data of scRNA-Seq
2.8 years ago by jomo018 ▴ 690
0
votes
1
reply
5.0k
views
Answer: A: Remove ensembl identifiers from Seurat
2.8 years ago by jomo018 ▴ 690
1
vote
5
replies
6.9k
views
Relative variance in PCA of scaled data of scRNA-Seq
variance scRNA-Seq Seurat PCA
2.8 years ago by jomo018 ▴ 690
0
votes
0
replies
2.4k
views
Comment: C: Statistical test for overlap
2.8 years ago by jomo018 ▴ 690
1
vote
1
reply
1.7k
views
Comment: C: Seurat FeaturePlot across stims
2.9 years ago by jomo018 ▴ 690
0
votes
1
reply
1.6k
views
Seurat integrated analysis - methods for cell-type specific responses
RNA-Seq Single-Cell differential-expression
3.0 years ago by jomo018 ▴ 690
0
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0
replies
6.3k
views
Comment: C: GSEA PreRanked lists from DESeq2 results table
3.1 years ago by jomo018 ▴ 690
2
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1
reply
6.3k
views
Answer: A: GSEA PreRanked lists from DESeq2 results table
3.1 years ago by jomo018 ▴ 690
3
votes
1
reply
12k
views
Answer: A: Illumina paired-end reads R1 and R2 mixed together?
3.3 years ago by jomo018 ▴ 690
2
votes
1
reply
1.0k
views
Answer: C: RRBS analysis using methylkit with 2 variables
3.4 years ago by jomo018 ▴ 690
5
votes
1
reply
4.0k
views
Answer: C: Maths implications: log2 transformation before or after normalisation
3.4 years ago by jomo018 ▴ 690
1
vote
1
reply
1.4k
views
Comment: C: RNAseq differential expression analysis : no significative FDR but significative
3.4 years ago by jomo018 ▴ 690
0
votes
0
replies
2.7k
views
Comment: C: DESeq2: (1) Comparing multiple groups using a for loop & (2) normalization of ti
3.5 years ago by jomo018 ▴ 690
0
votes
1
reply
1.2k
views
Comment: C: subsetting matrix elements and creating a histogram
3.5 years ago by jomo018 ▴ 690
0
votes
1
reply
1.2k
views
Comment: C: subsetting matrix elements and creating a histogram
3.5 years ago by jomo018 ▴ 690
0
votes
1
reply
1.3k
views
Comment: C: RRBS Methylation integration with RNA-seq differential expression
3.7 years ago by jomo018 ▴ 690
14
votes
31
replies
9.5k
views
6 follow
De-duplicate UMI at FASTQ level
UMI fastq
updated 4.2 years ago by ▴ 40 • written 4.4 years ago by ▴ 690
0
votes
0
replies
2.4k
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Comment: C: FASTQ alignment result is really bad
4.3 years ago by jomo018 ▴ 690
1
vote
0
replies
5.3k
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Comment: C: log vs square-root transformation
4.4 years ago by jomo018 ▴ 690
0
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0
replies
2.0k
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Comment: C: salmon - tximport - deseq2 gene level workflow
4.4 years ago by jomo018 ▴ 690
0
votes
2
replies
2.0k
views
salmon - tximport - deseq2 gene level workflow
RNA-Seq salmon deseq2 tximport
4.4 years ago by jomo018 ▴ 690
1
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0
replies
4.2k
views
Answer: A: How to extract unique values between columns in R ?
4.4 years ago by jomo018 ▴ 690
0
votes
0
replies
2.6k
views
Comment: C: Mouse Enhancers Database/ Mouse Enhancer annotation
4.4 years ago by jomo018 ▴ 690
0
votes
0
replies
2.6k
views
Answer: A: Mouse Enhancers Database/ Mouse Enhancer annotation
4.4 years ago by jomo018 ▴ 690
0
votes
3
replies
13k
views
Answer: C: TypeError: 'str' object is not callable
updated 4.4 years ago by 38k • written 4.4 years ago by ▴ 690
0
votes
0
replies
3.1k
views
Comment: C: Error using bedtools "intersect" command
4.5 years ago by jomo018 ▴ 690
1
vote
1
reply
3.1k
views
Comment: C: Error using bedtools "intersect" command
4.5 years ago by jomo018 ▴ 690
0
votes
1
reply
3.4k
views
Answer: A: Salmon (error: SAM file and fasta file have different transcript length)
4.5 years ago by jomo018 ▴ 690
1
vote
0
replies
3.2k
views
Comment: C: Salmon error message
4.5 years ago by jomo018 ▴ 690
4
votes
0
replies
63k
views
Answer: A: Fold change - a final explanation
4.5 years ago by jomo018 ▴ 690
2
votes
0
replies
9.8k
views
Answer: A: giving a color to null values on heatmap2
4.5 years ago by jomo018 ▴ 690
1
vote
1
reply
3.4k
views
Comment: C: Illegal Division by zero
4.5 years ago by jomo018 ▴ 690
1
vote
1
reply
3.4k
views
Comment: C: Illegal Division by zero
4.5 years ago by jomo018 ▴ 690
0
votes
1
reply
4.3k
views
Comment: C: How to append the cell barcode and UMI information to the fastq header in paired
4.6 years ago by jomo018 ▴ 690
0
votes
1
reply
1.9k
views
Comment: C: De-multiplex of no illumina index RNAseq libraries on Novaseq
4.6 years ago by jomo018 ▴ 690
106 results • Page 1 of 3
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