User: Mike

gravatar for Mike
Mike660
Reputation:
660
Status:
Trusted
Location:
UK
Last seen:
1 month ago
Joined:
1 year, 5 months ago
Email:
m***@gmail.com

Posts by Mike

<prev • 163 results • page 1 of 17 • next >
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Comment: C: How to add single gene name in volcano plot ?
... Thank you very much.. It is working perfectly fine. ...
written 4 weeks ago by Mike660
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How to add single gene name in volcano plot ?
... Hi all, I am using R script from Getting Genetics Done ( http://www.gettinggeneticsdone.com/2014/05/r-volcano-plots-to-visualize-rnaseq-microarray.html) to generating Volcano plots but my problem is how to show particular single gene name on volcano plot without any condition (i.e foldchange or p ...
R volcano written 4 weeks ago by Mike660 • updated 4 weeks ago by WouterDeCoster20k
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Answer: A: tcgabioloink level 1 data
... Could you please post your initial code, so it would be easy for others to find out your error. ...
written 3 months ago by Mike660
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Answer: A: survival analysis question
... Hi, please have a look at following post... everything described there in detail.. https://www.biostars.org/p/153013/ ...
written 3 months ago by Mike660
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Comment: C: Seeking private tutor to learn RNA/ChIP-Seq data analysis
... I am also big fan of your notes. ChIP-seq and RNA-seq notes are amazing. I would recommend these notes to anyone who learning ChIP-seq and RNA-seq data analysis. ...
written 3 months ago by Mike660
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Answer: A: DE analysis using single cell RNA-seq data
... Have a look.. https://www.bioconductor.org/help/workflows/simpleSingleCell/ ...
written 3 months ago by Mike660
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Comment: C: GVSA: problem with gene identifier
... read geneset file in getGmt, Not expression_matrix. genelist_mic <- getGmt(geneset.gmt) ...
written 4 months ago by Mike660
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Comment: C: GVSA: problem with gene identifier
... Agree with @Lluís R point on the support of Bioconductor. Anyways, I think there is a problem in reading geneset file. Try with gmt format. How many geneset are you using ? ...
written 4 months ago by Mike660
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Answer: A: GVSA: problem with gene identifier
... I also observed same in my cases, so name of gene in gene list (genelist_mic) and your expression matrix should be same. I mean gene "Ysk4" in genelist_mic should be same as "Ysk4" in expression matrix. And one more thing that some TCGA data analysis package automatically convert official gene name, ...
written 4 months ago by Mike660
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Comment: C: extracting the genes associated with the clusters
... You can use *cutree* function, cutree(hc, k) have a look at following links: http://stackoverflow.com/questions/20912001/extract-groups-from-distance-matrix-using-cutree-in-r http://stackoverflow.com/questions/11489696/how-to-know-about-group-information-in-cluster-analysis-hierarchical ho ...
written 5 months ago by Mike660

Latest awards to Mike

Popular Question 3 months ago, created a question with more than 1,000 views. For Single Cell RNAseq data analysis protocol
Scholar 3 months ago, created an answer that has been accepted. For A: survival analysis question
Commentator 3 months ago, created a comment with at least 3 up-votes. For C: extracting the genes associated with the clusters
Appreciated 5 months ago, created a post with more than 5 votes. For A: Single Cell RNAseq data analysis protocol
Commentator 5 months ago, created a comment with at least 3 up-votes. For C: extracting the genes associated with the clusters
Popular Question 6 months ago, created a question with more than 1,000 views. For Single Cell RNAseq data analysis protocol
Student 9 months ago, asked a question with at least 3 up-votes. For How to avoid conversion of gene symbols to date format in Excel
Teacher 10 months ago, created an answer with at least 3 up-votes. For C: Starting a career in Bioinformatics
Student 11 months ago, asked a question with at least 3 up-votes. For How to avoid conversion of gene symbols to date format in Excel
Supporter 11 months ago, voted at least 25 times.
Centurion 11 months ago, created 100 posts.
Teacher 14 months ago, created an answer with at least 3 up-votes. For C: Starting a career in Bioinformatics

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