User: Mike
Mike • 1.1k
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Posts by Mike
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... Thanks RamRS, I edited my post ...
written 7 days ago by
Mike • 1.1k
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... I tried with GENCODE and Ensembl for GRCh37 and build index file. But I do not know how to include the spike-in genome. ...
written 7 days ago by
Mike • 1.1k
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... Hi All,
I used GENCODE and Ensembl for build GRCh37 index file. But I do not know how to include the spike-in genome. I want to reproduce my results using "GRCh37.EBVB95-8wt.ERCC" genome but I dont know how to build this genome.
Thanks ...
written 7 days ago by
Mike • 1.1k
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Comment:
C: Eigen genes using WGCNA
... This script will give you name of genes in each module ...
written 12 weeks ago by
Mike • 1.1k
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Comment:
C: Eigen genes using WGCNA
... Agree with Kevin's point.
you can try with this code to extract modules..
**Extract modules**
module_colors= setdiff(unique(dynamicColors), "grey")
for (color in module_colors){
module=SubGeneNames[which(dynamicColors==color)]
write.table(module, paste("module_",color, ".t ...
written 3 months ago by
Mike • 1.1k
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... Hi All,
I am looking pipeline for analysis Lexogen QuantSeq 3' mRNA-Seq data. I will be very grateful if you help me.
regards ...
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... I found a nice tutorial to build Phylogenetic Trees from fasta sequence...
http://www.cbs.dtu.dk/courses/biosys/binfintro/phylogeny.php
Step 1: Open the sequence file (fasta), select the entire file, and copy the sequences.
Step 2 : Align the sequences in using the mafft server at EBI with def ...
written 3 months ago by
Mike • 1.1k
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... Thanks cpad0112, yes I can read file in read.phylip function from phylotools but not from ggtree/ treeio. How can I build tree using this phylip file in phylotools. ...
written 3 months ago by
Mike • 1.1k
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... Thanks Sej, thats my problem, how to generate phylip file (phylip alignment + newick string) to plotting in ggtree. ...
written 3 months ago by
Mike • 1.1k
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... Thanks jrj.healey for your help, I have around 150 protein sequences, this is just toy/example data. ...
written 3 months ago by
Mike • 1.1k
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