User: Mike
Mike • 750
- Reputation:
- 750
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- Trusted
- Location:
- UK
- Last seen:
- 3 weeks, 2 days ago
- Joined:
- 1 year, 7 months ago
- Email:
- m***@gmail.com
Posts by Mike
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1
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156
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... Have a look at following packages...
GenVisR (parameter *mutBurden*)
https://bioconductor.org/packages/devel/bioc/vignettes/GenVisR/inst/doc/GenVisR_intro.html
maftools
https://bioconductor.org/packages/devel/bioc/vignettes/maftools/inst/doc/maftools.html
https://www.biostars.org/p/181159/
...
written 24 days ago by
Mike • 750
7
votes
3
answers
283
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3
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... **Have a look at following useful links...**
ChIP-seq-analysis (one of the best link for beginners )
https://github.com/crazyhottommy/ChIP-seq-analysis
NGS data analysis with R / Bioconductor: ChIP-Seq workflow
http://biocluster.ucr.edu/~rkaundal/workshops/R_feb2016/ChIPseq/ChIPseq.html
Pipeli ...
written 5 weeks ago by
Mike • 750
0
votes
1
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307
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1
answers
... Thank you very much..
It is working perfectly fine. ...
written 3 months ago by
Mike • 750
2
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1
answer
307
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1
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... Hi all,
I am using R script from Getting Genetics Done ( http://www.gettinggeneticsdone.com/2014/05/r-volcano-plots-to-visualize-rnaseq-microarray.html) to generating Volcano plots but my problem is how to show particular single gene name on volcano plot without any condition (i.e foldchange or p ...
written 3 months ago by
Mike • 750
• updated
3 months ago by
WouterDeCoster ♦ 22k
0
votes
1
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197
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1
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Answer:
A: tcgabioloink level 1 data
... Could you please post your initial code, so it would be easy for others to find out your error. ...
written 5 months ago by
Mike • 750
2
votes
1
answer
289
views
1
answers
Answer:
A: survival analysis question
... Hi, please have a look at following post... everything described there in detail..
https://www.biostars.org/p/153013/ ...
written 5 months ago by
Mike • 750
2
votes
2
answers
650
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2
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... I am also big fan of your notes. ChIP-seq and RNA-seq notes are amazing. I would recommend these notes to anyone who learning ChIP-seq and RNA-seq data analysis.
...
written 5 months ago by
Mike • 750
2
votes
2
answers
349
views
2
answers
... Have a look..
https://www.bioconductor.org/help/workflows/simpleSingleCell/
...
written 5 months ago by
Mike • 750
0
votes
2
answers
311
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2
answers
... read geneset file in getGmt, Not expression_matrix.
genelist_mic <- getGmt(geneset.gmt)
...
written 6 months ago by
Mike • 750
1
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2
answers
311
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... Agree with @Lluís R point on the support of Bioconductor.
Anyways, I think there is a problem in reading geneset file. Try with gmt format.
How many geneset are you using ? ...
written 6 months ago by
Mike • 750
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