User: Mike

gravatar for Mike
Mike750
Reputation:
750
Status:
Trusted
Location:
UK
Last seen:
3 weeks, 2 days ago
Joined:
1 year, 7 months ago
Email:
m***@gmail.com

Posts by Mike

<prev • 165 results • page 1 of 17 • next >
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Answer: A: R package to plot mutational frequency
... Have a look at following packages... GenVisR (parameter *mutBurden*) https://bioconductor.org/packages/devel/bioc/vignettes/GenVisR/inst/doc/GenVisR_intro.html maftools https://bioconductor.org/packages/devel/bioc/vignettes/maftools/inst/doc/maftools.html https://www.biostars.org/p/181159/ ...
written 24 days ago by Mike750
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Answer: A: ChIP-seq. analysis Tutorial for Dummies
... **Have a look at following useful links...** ChIP-seq-analysis (one of the best link for beginners ) https://github.com/crazyhottommy/ChIP-seq-analysis NGS data analysis with R / Bioconductor: ChIP-Seq workflow http://biocluster.ucr.edu/~rkaundal/workshops/R_feb2016/ChIPseq/ChIPseq.html Pipeli ...
written 5 weeks ago by Mike750
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Comment: C: How to add single gene name in volcano plot ?
... Thank you very much.. It is working perfectly fine. ...
written 3 months ago by Mike750
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How to add single gene name in volcano plot ?
... Hi all, I am using R script from Getting Genetics Done ( http://www.gettinggeneticsdone.com/2014/05/r-volcano-plots-to-visualize-rnaseq-microarray.html) to generating Volcano plots but my problem is how to show particular single gene name on volcano plot without any condition (i.e foldchange or p ...
R volcano written 3 months ago by Mike750 • updated 3 months ago by WouterDeCoster22k
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Answer: A: tcgabioloink level 1 data
... Could you please post your initial code, so it would be easy for others to find out your error. ...
written 5 months ago by Mike750
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Answer: A: survival analysis question
... Hi, please have a look at following post... everything described there in detail.. https://www.biostars.org/p/153013/ ...
written 5 months ago by Mike750
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Comment: C: Seeking private tutor to learn RNA/ChIP-Seq data analysis
... I am also big fan of your notes. ChIP-seq and RNA-seq notes are amazing. I would recommend these notes to anyone who learning ChIP-seq and RNA-seq data analysis. ...
written 5 months ago by Mike750
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Answer: A: DE analysis using single cell RNA-seq data
... Have a look.. https://www.bioconductor.org/help/workflows/simpleSingleCell/ ...
written 5 months ago by Mike750
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Comment: C: GVSA: problem with gene identifier
... read geneset file in getGmt, Not expression_matrix. genelist_mic <- getGmt(geneset.gmt) ...
written 6 months ago by Mike750
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Comment: C: GVSA: problem with gene identifier
... Agree with @Lluís R point on the support of Bioconductor. Anyways, I think there is a problem in reading geneset file. Try with gmt format. How many geneset are you using ? ...
written 6 months ago by Mike750

Latest awards to Mike

Popular Question 4 weeks ago, created a question with more than 1,000 views. For HTSeq error when reading BAM file
Good Answer 5 weeks ago, created an answer that was upvoted at least 5 times. For A: ChIP-seq. analysis Tutorial for Dummies
Appreciated 5 weeks ago, created a post with more than 5 votes. For A: Single Cell RNAseq data analysis protocol
Teacher 5 weeks ago, created an answer with at least 3 up-votes. For C: Starting a career in Bioinformatics
Appreciated 3 months ago, created a post with more than 5 votes. For A: Single Cell RNAseq data analysis protocol
Popular Question 3 months ago, created a question with more than 1,000 views. For HTSeq error when reading BAM file
Popular Question 3 months ago, created a question with more than 1,000 views. For How to avoid conversion of gene symbols to date format in Excel
Popular Question 5 months ago, created a question with more than 1,000 views. For Single Cell RNAseq data analysis protocol
Scholar 5 months ago, created an answer that has been accepted. For A: survival analysis question
Commentator 5 months ago, created a comment with at least 3 up-votes. For C: extracting the genes associated with the clusters
Appreciated 7 months ago, created a post with more than 5 votes. For A: Single Cell RNAseq data analysis protocol
Commentator 7 months ago, created a comment with at least 3 up-votes. For C: extracting the genes associated with the clusters
Popular Question 8 months ago, created a question with more than 1,000 views. For Single Cell RNAseq data analysis protocol
Student 11 months ago, asked a question with at least 3 up-votes. For How to avoid conversion of gene symbols to date format in Excel
Teacher 12 months ago, created an answer with at least 3 up-votes. For C: Starting a career in Bioinformatics
Student 13 months ago, asked a question with at least 3 up-votes. For How to avoid conversion of gene symbols to date format in Excel
Supporter 13 months ago, voted at least 25 times.
Centurion 13 months ago, created 100 posts.
Teacher 16 months ago, created an answer with at least 3 up-votes. For C: Starting a career in Bioinformatics

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