User: Mike

gravatar for Mike
Mike980
Reputation:
980
Status:
Trusted
Location:
UK
Last seen:
2 months, 3 weeks ago
Joined:
2 years, 3 months ago
Email:
m***@gmail.com

Posts by Mike

<prev • 177 results • page 1 of 18 • next >
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Comment: C: Complex Heatmap: Changing order of clusters
... Thanks Kevin, this is very useful code. ...
written 11 weeks ago by Mike980
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Difference between Gene co-expression network and Gene regulatory network
... Hi All, What are basic difference between Gene co-expression network and Gene regulatory network ? I want to build co-expression and regulatory network for a list of genes from RNAseq data, could you please suggest me tools for both type of networks. Thanks ...
gene rna-seq written 3 months ago by Mike980
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How to find list of gene name from HOMER motif output
... Hi all, I am using "findMotifs.pl" script from HOMER to find motifs from a list. I used following command.. perl findMotifs.pl genelist.txt human motifoutputdir -len 25 I got following output list, simple text file: Motif Name Consensus P-value Log P-value q-value (Benjamini) ...
homer motif written 5 months ago by Mike980 • updated 5 months ago by mcjmigdal10
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Comment: C: How to mark/ highlights specific points (expression value) in boxplot in R
... Thanks a lot, @cpad0112 ...
written 6 months ago by Mike980
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How to mark/ highlights specific points (expression value) in boxplot in R
... Hi All, Sorry for technical question. I am trying to make a boxplot of gene expression data for some samples, and wanted to highlight specific points (expression value) based on gene name "TP53". I am able to highlight color in scatter plot but couldn't in boxplot, my code for scatter plot is ...
boxplot R written 6 months ago by Mike980 • updated 6 months ago by cpad01126.3k
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Comment: C: Network plot from expression data in R using igraph
... Thank you very much, Kevin ...
written 6 months ago by Mike980
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Comment: C: Network plot from expression data in R using igraph
... yes I installed vsn and loaded `library(vsn)` then I check normalize.AffyBatch.vsn, but I couldnt get it... ?normalize.AffyBatch.vsn normalize.AffyBatch.vsn package:vsn R Documentation Wrapper for vsn to be used as a normalization method with expresso Description: W ...
written 6 months ago by Mike980
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Comment: C: Network plot from expression data in R using igraph
... Thank you Kevin, I got some errors in step1 data normalization x <- expresso( + a, + bg.correct=FALSE, + normalize.method="vsn", + normalize.param=list(subsample=1000), + pmcorrect.method="pmonly", + summary.method="medianpolish" + ) normalization: v ...
written 6 months ago by Mike980
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Comment: C: How do I explain the difference between edgeR, LIMMA, DESeq etc. to experimental
... Thank you Kevin for explanation. ...
written 6 months ago by Mike980
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Comment: C: How do I explain the difference between edgeR, LIMMA, DESeq etc. to experimental
... Thank you Istvan for your help. ...
written 6 months ago by Mike980

Latest awards to Mike

Popular Question 4 months ago, created a question with more than 1,000 views. For clusterProfiler: Input file format
Popular Question 5 months ago, created a question with more than 1,000 views. For clusterProfiler: Input file format
Popular Question 6 months ago, created a question with more than 1,000 views. For clusterProfiler: Input file format
Popular Question 6 months ago, created a question with more than 1,000 views. For clusterProfiler: Input file format
Popular Question 6 months ago, created a question with more than 1,000 views. For GSEA with TCGA data
Popular Question 6 months ago, created a question with more than 1,000 views. For TCGA data: comparision in normal and tumor samples
Popular Question 6 months ago, created a question with more than 1,000 views. For GSVA analysis in R: How to use my geneset and expression data matrix in GSVA.
Student 6 months ago, asked a question with at least 3 up-votes. For Single Cell RNAseq data analysis protocol
Appreciated 8 months ago, created a post with more than 5 votes. For A: ChIP-seq. analysis Tutorial for Dummies
Good Question 8 months ago, asked a question that was upvoted at least 5 times. For Single Cell RNAseq data analysis protocol
Good Answer 8 months ago, created an answer that was upvoted at least 5 times. For A: ChIP-seq. analysis Tutorial for Dummies
Popular Question 8 months ago, created a question with more than 1,000 views. For HTSeq error when reading BAM file
Popular Question 8 months ago, created a question with more than 1,000 views. For clusterProfiler: Input file format
Popular Question 8 months ago, created a question with more than 1,000 views. For GSEA with TCGA data
Popular Question 9 months ago, created a question with more than 1,000 views. For HTSeq error when reading BAM file
Good Answer 9 months ago, created an answer that was upvoted at least 5 times. For A: ChIP-seq. analysis Tutorial for Dummies
Appreciated 9 months ago, created a post with more than 5 votes. For A: Single Cell RNAseq data analysis protocol
Teacher 9 months ago, created an answer with at least 3 up-votes. For C: Starting a career in Bioinformatics
Appreciated 11 months ago, created a post with more than 5 votes. For A: Single Cell RNAseq data analysis protocol
Popular Question 11 months ago, created a question with more than 1,000 views. For HTSeq error when reading BAM file
Popular Question 11 months ago, created a question with more than 1,000 views. For How to avoid conversion of gene symbols to date format in Excel
Popular Question 13 months ago, created a question with more than 1,000 views. For Single Cell RNAseq data analysis protocol
Scholar 13 months ago, created an answer that has been accepted. For A: survival analysis question
Commentator 13 months ago, created a comment with at least 3 up-votes. For C: extracting the genes associated with the clusters
Appreciated 15 months ago, created a post with more than 5 votes. For A: Single Cell RNAseq data analysis protocol

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