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6
votes
9
replies
5.1k
views
Survival analysis for a list of genes using TCGA data
Survival coxph TCGA Survival analysis
updated 4.2 years ago by ▴ 50 • written 6.8 years ago by ★ 1.9k
49
votes
25
replies
16k
views
16 follow
How to avoid conversion of gene symbols to date format in Excel
gene
updated 4.5 years ago by ▴ 160 • written 9.1 years ago by ★ 1.9k
0
votes
0
replies
11k
views
Comment: C: GVSA: problem with gene identifier
updated 5.2 years ago by 45k • written 8.5 years ago by ★ 1.9k
8
votes
9
replies
7.9k
views
HTSeq error when reading BAM file
rna-seq htseq
updated 5.9 years ago by 20 • written 9.1 years ago by ★ 1.9k
149
votes
22
replies
91k
views
15 follow
How do I explain the difference between edgeR, LIMMA, DESeq etc. to experimental Biologist/non-bioinformatician
gene LIMMA edgeR
updated 2.4 years ago by 89k • written 7.9 years ago by ★ 1.9k
0
votes
5
replies
2.0k
views
How to find significantly mutually exclusive expressed genes in TCGA
RNA-Seq mutual expression correlation
6.2 years ago by Mike ★ 1.9k
0
votes
0
replies
2.0k
views
Comment: C: How to find significantly mutually exclusive expressed genes in TCGA
6.2 years ago by Mike ★ 1.9k
0
votes
0
replies
2.0k
views
Comment: C: How to find significantly mutually exclusive expressed genes in TCGA
6.2 years ago by Mike ★ 1.9k
0
votes
1
reply
6.7k
views
Comment: C: Number of Tn5 insertions in TCGA ATAC-Seq data
6.2 years ago by Mike ★ 1.9k
3
votes
3
replies
6.7k
views
Number of Tn5 insertions in TCGA ATAC-Seq data
sequencing atac-seq ATAC-Seq TCGA
updated 6.2 years ago by 89k • written 6.2 years ago by ★ 1.9k
0
votes
1
reply
1.6k
views
How to calculate base substitution mutation frequency (C>T T>A C>G T>C T>G C>A) from TCGA MAF files
TCGA MAF SNP
updated 6.4 years ago by ▴ 30 • written 6.4 years ago by ★ 1.9k
7
votes
2
replies
5.9k
views
How to add single gene name in volcano plot ?
R volcano plot
updated 6.4 years ago by 12k • written 8.3 years ago by ★ 1.9k
1
vote
0
replies
17k
views
Comment: C: How to calculate Tumor Mutation Burden (TMB) for TCGA samples
6.6 years ago by Mike ★ 1.9k
2
votes
1
reply
17k
views
Comment: C: How to calculate Tumor Mutation Burden (TMB) for TCGA samples
6.6 years ago by Mike ★ 1.9k
14
votes
7
replies
17k
views
How to calculate Tumor Mutation Burden (TMB) for TCGA samples
TMB Tumor Mutation Burden TCGA maftools GenVisR
6.6 years ago by Mike ★ 1.9k
0
votes
1
reply
17k
views
Comment: C: How to calculate Tumor Mutation Burden (TMB) for TCGA samples
6.6 years ago by Mike ★ 1.9k
0
votes
1
reply
3.4k
views
Comment: C: TCGA survival analysis: continuous vs discrete expression values
6.7 years ago by Mike ★ 1.9k
1
vote
1
reply
3.4k
views
Comment: C: TCGA survival analysis: continuous vs discrete expression values
6.7 years ago by Mike ★ 1.9k
0
votes
2
replies
3.4k
views
Comment: C: TCGA survival analysis: continuous vs discrete expression values
6.7 years ago by Mike ★ 1.9k
0
votes
1
reply
3.4k
views
Comment: C: TCGA survival analysis: continuous vs discrete expression values
6.7 years ago by Mike ★ 1.9k
4
votes
9
replies
3.4k
views
TCGA survival analysis: continuous vs discrete expression values
survival coxph Cox model
6.7 years ago by Mike ★ 1.9k
0
votes
0
replies
3.1k
views
Answer: A: PDB id to DSSP
6.8 years ago by Mike ★ 1.9k
0
votes
1
reply
5.1k
views
Comment: C: Survival analysis for a list of genes using TCGA data
6.8 years ago by Mike ★ 1.9k
0
votes
1
reply
5.1k
views
Comment: C: Survival analysis for a list of genes using TCGA data
6.8 years ago by Mike ★ 1.9k
0
votes
1
reply
5.1k
views
Comment: C: Survival analysis for a list of genes using TCGA data
6.8 years ago by Mike ★ 1.9k
0
votes
1
reply
4.1k
views
Comment: C: How to build genome index file with ERCC (spike-in )
6.8 years ago by Mike ★ 1.9k
0
votes
1
reply
4.1k
views
Comment: C: How to build genome index file with ERCC (spike-in )
6.8 years ago by Mike ★ 1.9k
8
votes
5
replies
4.1k
views
How to build genome index file with ERCC (spike-in )
genome sequence annotation
updated 6.8 years ago by 105k • written 6.8 years ago by ★ 1.9k
0
votes
0
replies
1.8k
views
Comment: C: How to download/build GRCh37.EBVB95-8wt.ERCC genome / include spike-in genome
6.9 years ago by Mike ★ 1.9k
0
votes
4
replies
1.8k
views
How to download/build GRCh37.EBVB95-8wt.ERCC genome / include spike-in genome
sequence RNA-Seq genome
6.9 years ago by Mike ★ 1.9k
0
votes
1
reply
1.8k
views
Comment: C: How to download/build GRCh37.EBVB95-8wt.ERCC genome
6.9 years ago by Mike ★ 1.9k
0
votes
1
reply
7.7k
views
Comment: C: Eigen genes using WGCNA
7.1 years ago by Mike ★ 1.9k
0
votes
3
replies
7.7k
views
Comment: C: Eigen genes using WGCNA
7.1 years ago by Mike ★ 1.9k
10
votes
19
replies
26k
views
How to convert fasta file format to phylip file format
phylip fasta ggtree Phylogenetic tree R
updated 7.1 years ago by ★ 2.6k • written 7.2 years ago by ★ 1.9k
1
vote
1
reply
26k
views
Answer: A: How to convert fasta file format to phylip file format
7.2 years ago by Mike ★ 1.9k
0
votes
1
reply
26k
views
Comment: C: How to convert fasta file format to phylip file format
7.2 years ago by Mike ★ 1.9k
0
votes
1
reply
26k
views
Comment: C: How to convert fasta file format to phylip file format
7.2 years ago by Mike ★ 1.9k
0
votes
0
replies
26k
views
Comment: C: How to convert fasta file format to phylip file format
7.2 years ago by Mike ★ 1.9k
0
votes
2
replies
26k
views
Comment: C: How to convert fasta file format to phylip file format
7.2 years ago by Mike ★ 1.9k
0
votes
1
reply
26k
views
Comment: C: How to convert fasta file format to phylip file format
7.2 years ago by Mike ★ 1.9k
2
votes
0
replies
30k
views
Answer: A: Where can I find public Single Cell RNA-seq data?
7.3 years ago by Mike ★ 1.9k
4
votes
1
reply
4.7k
views
Answer: A: single cell RNA-seq pipeline
7.3 years ago by Mike ★ 1.9k
1
vote
2
replies
2.8k
views
How to interpret Bayesian network for selected genes
gene gene network bayesian network
updated 7.5 years ago by • 0 • written 9.1 years ago by ★ 1.9k
35
votes
12
replies
12k
views
8 follow
Single Cell RNAseq data analysis protocol
RNA-Seq sequencing next-gen
updated 7.6 years ago by 20 • written 9.3 years ago by ★ 1.9k
1
vote
0
replies
28k
views
Comment: C: Complex Heatmap: Changing order of clusters
7.6 years ago by Mike ★ 1.9k
0
votes
1
reply
2.9k
views
Difference between Gene co-expression network and Gene regulatory network
gene RNA-Seq
7.6 years ago by Mike ★ 1.9k
8
votes
1
reply
12k
views
Answer: A: Single Cell RNAseq data analysis protocol
7.7 years ago by Mike ★ 1.9k
0
votes
4
replies
5.5k
views
How to find list of gene name from HOMER motif output
HOMER motif
updated 3.2 years ago by • 0 • written 7.8 years ago by ★ 1.9k
1
vote
3
replies
7.6k
views
Chipseq peaks HOMER annotation results
ChIP-Seq HOMER
updated 7.9 years ago by 7.6k • written 9.1 years ago by ★ 1.9k
0
votes
0
replies
9.3k
views
Comment: C: How to mark/ highlights specific points (expression value) in boxplot in R
7.9 years ago by Mike ★ 1.9k
211 results • Page 1 of 5
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