User: mathavanbioinfo

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Location:
India
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1 day, 18 hours ago
Joined:
3 years, 3 months ago
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Posts by mathavanbioinfo

<prev • 14 results • page 1 of 2 • next >
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What is acceptable optimal overall percentage of Hisat2?
... Hello all please share you're valuable knowledge! I am doing RNA-seq for human sample, I got different overall alignment(Hisat2) rate my samples percentage are 90.12, 95.26, 90.71,94.72 Is they're any optimal value is they're to accepting or reject the overall percentage of hisat2, shall I continue ...
rna-seq written 3 days ago by mathavanbioinfo10
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(Closed) How to merge large number of excel files into single files?
... Hi I have 2000 excel files, I want to merge in a single file can anyone share R or PERL codes all files have 3 attributes Thank you ...
R written 3 months ago by mathavanbioinfo10
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How to compare time series data of gene expression studies?
... Hello All I have a time series RNA seq data, the format look likes, patient samples collected from Day 1 to Day 20 ( sample size 20)and control sample ( 20). I would like compare all the samples into two groups as infected and control. is this statistically meaningful for getting DEG? ...
sequencing written 17 months ago by mathavanbioinfo10
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microarray data analysis GEO2R results?
... Hello every one please share your valuable suggestions I am working with micro array data analysis, In the GEO2R results shows probe id represents more than one gene names showing Eg: IGLL5///CYAT1///IGLV3-21, how i can take this for further analysis Thank you ...
gene written 19 months ago by mathavanbioinfo10
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Comment: C: single probe represent multiple genes?
... Thank you for your valuable comments ...
written 2.3 years ago by mathavanbioinfo10
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single probe represent multiple genes?
... Hello friends I am doing micro array data analysis(HGU1333plus2), i got the expression matrix file by using gcrma , but the some probe is represent multiple gene like this . how can we treat this, then some probe is not matched it shows NA can delete it , next i take this file for analyze WGCNA , ...
R written 2.3 years ago by mathavanbioinfo10 • updated 2.3 years ago by ddiez1.7k
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What are all the different methods available for identifying the DEG?
... Dear All, I am working on Micro-array data analysis with this GEO acc no. GSE31747, In this paper PMID 22024983 (https://www.ncbi.nlm.nih.gov/pubmed/22028943) they have used ANOVA method to identify the significant genes,Now i am trying to compare their results with Limma package but i am not ge ...
microarray limma written 2.5 years ago by mathavanbioinfo10
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Pathway analysis of miRNA?
... Hello everyone I want to do pathway analysis of list of miRNA which are related to multi drug resistance, can you Share any ideas about the suitable tools? ...
next-gen written 3.2 years ago by mathavanbioinfo10 • updated 3.1 years ago by Biostar ♦♦ 20
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Comment: C: Up and Down regulated genes
... My previous questions is what is differential gene expression and reliability! But this question talks about how to analyze the deferentially expressed gene.( I want to focus on virus specific mechanism to human host) ...
written 3.2 years ago by mathavanbioinfo10
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Up and Down regulated genes
... Hello experts can share your knowledge While analyzing the deferentially expressed genes some paper they have analyzed up or down regulated genes separately. Is it possible to analyze up/down both at a time? I want to analyze only down regulated genes by using meta analysis,( Micro-array) pl share ...
next-gen written 3.2 years ago by mathavanbioinfo10

Latest awards to mathavanbioinfo

Popular Question 6 weeks ago, created a question with more than 1,000 views. For Up and Down regulated genes
Popular Question 7 weeks ago, created a question with more than 1,000 views. For Up and Down regulated genes
Popular Question 10 months ago, created a question with more than 1,000 views. For Up and Down regulated genes
Popular Question 16 months ago, created a question with more than 1,000 views. For Up and Down regulated genes
Popular Question 2.2 years ago, created a question with more than 1,000 views. For Microarray adata Normalization using GEO2R?

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