User: mathavanbioinfo

Reputation:
50
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New User
Location:
India
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https://scholar.google...
Last seen:
11 hours ago
Joined:
3 years, 7 months ago
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Posts by mathavanbioinfo

<prev • 35 results • page 1 of 4 • next >
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Answer: C: Question on performing RMA normalization
... hi Unzip and try it again ...
written 13 hours ago by mathavanbioinfo50
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Comment: C: Is there virus specific genetic code available?
... hello, This question seems to be generalized, but my expectation about how viral genes expressed and patterns in it to transcribe. Further viral UTR and lncRNA are not explored much. This question may lead to an active discussion about viral genome and their transcriptome. Thank you! ...
written 2 days ago by mathavanbioinfo50
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(Closed) Is there virus specific genetic code available?
... Hello All, I want to know viruses specific genetic codes, if there, what are all the major differences between eukaryotic and virus genetic codes. Then, how viruses transcribe their genetic information. The basic difference between virus and eukaryotic genetic codes. Further, how viruses are genera ...
virus genomes genetic code written 2 days ago by mathavanbioinfo50
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Comment: C: STRING does not support networks larger than 2000 nodes.
... Hi First the select the organism and try it. Further, the Interpretation of such dense network is biologically significant?, My suggestion increases the cut-off value of logFC and try again. ...
written 2 days ago by mathavanbioinfo50
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How to create matrix for larger data set?
... Dear All, I have an excel file containing two attributes genesA and genesB , the entity in the first attribute interacts with the second. attribute. the attribute size 10000 rows, I want to create a matrix contain the boolean values [0,1] genesA as rows and genesB as a column. please hit the link be ...
matrix rna-seq written 15 days ago by mathavanbioinfo50 • updated 15 days ago by ATpoint24k
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What is the differences in index building by hisat with or without exon, splicing variant files?
... Hello All, I am working NGS data analysis, for building an index hisat list two option with or without exon, splicing variant file, what is the main differences are there. Which index file is suitable for **novel lncRNA** prediction **code** $ extract_splice_sites.py chrX_data/genes/chrX.gtf > ...
lncrna rna-seq hisat2 written 22 days ago by mathavanbioinfo50
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How to convert agilent probe id into gene symbol in gene expression matrix?
... Hello all, I want to convert agilent probe id to gene symbol in the gene expression matrix file. help me to solve this https://ibb.co/8xzxYPc ...
agilent probe conversion written 22 days ago by mathavanbioinfo50
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Comment: C: Normalization agilent microarray data?
... How to solve this > sigmatrix <- project.NormData$E[probeset.list,] Error in project.NormData$E[probeset.list, ] : invalid subscript type 'list' ...
written 24 days ago by mathavanbioinfo50
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Novel lncRNA identification and quantification RNA seq?
... Hello All, I am working on human novel lncRNA expression & quantification in different cell types, I build index files ( hg38) with & without --exon --splice-sites by Hisat2, Is there any differences are in the results of CPC2 tool. **Index files build with exon & splice sites** $ e ...
sequencing assembly lncrna rna-seq hisat2 written 28 days ago by mathavanbioinfo50
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Comment: C: Normalization agilent microarray data?
... Thank you, I will do it ...
written 29 days ago by mathavanbioinfo50

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Popular Question 5 weeks ago, created a question with more than 1,000 views. For Up and Down regulated genes
Popular Question 4 months ago, created a question with more than 1,000 views. For Up and Down regulated genes
Popular Question 5 months ago, created a question with more than 1,000 views. For Up and Down regulated genes
Popular Question 5 months ago, created a question with more than 1,000 views. For Up and Down regulated genes
Popular Question 14 months ago, created a question with more than 1,000 views. For Up and Down regulated genes
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Popular Question 2.5 years ago, created a question with more than 1,000 views. For Microarray adata Normalization using GEO2R?

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