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3
votes
2
replies
484
views
How interpret question mark symbol strand column in GFF file?
GFF transcriptome
updated 6 months ago by 14k • written 6 months ago by ▴ 70
2
votes
1
reply
270
views
How to run phylogeny for genome assembly file?
phylogenetic tree Phylogeny assembly genome
updated 8 months ago by ★ 23k • written 8 months ago by ▴ 70
1
vote
2
replies
312
views
How to download all fungal virulence proteins from UniProt?
protein blast fungi uniprot
updated 10 weeks ago by 39k • written 9 months ago by ▴ 70
1
vote
1
reply
295
views
Differential Gene Expression of lncRNAs analysis from GENCODE reference file?
DEG lncRNA
updated 10 months ago by ★ 1.8k • written 10 months ago by ▴ 70
0
votes
0
replies
196
views
How to merge the pair end sample for GBS analysis in TASSEL software?
GBS plot GAPPIT
updated 13 months ago by 8.4k • written 13 months ago by ▴ 70
1
vote
1
reply
506
views
Subread FeatureCounts produces zero percent successfull alignment
zero subread featrureCounts alignment
updated 17 months ago by 8.4k • written 17 months ago by ▴ 70
0
votes
1
reply
545
views
Unable to download kraken2 database
databaase kraken2 metagenome
updated 17 months ago by 129k • written 17 months ago by ▴ 70
0
votes
0
replies
306
views
How to remove the isoform in the trasncript.fa file from salmon output?
transcript salmon denovo assembly
updated 17 months ago by 72k • written 17 months ago by ▴ 70
0
votes
1
reply
635
views
How to calculate phred score of fastq files?
linux phred fastq
updated 20 months ago by 129k • written 20 months ago by ▴ 70
0
votes
2
replies
661
views
How to download all the genome fasta file for plants?
standalone blast
updated 20 months ago by ★ 3.5k • written 20 months ago by ▴ 70
0
votes
0
replies
1.6k
views
Comment: Comment: How to check if a Fastq file is contaminated with other strains?
22 months ago by mathavanbioinfo ▴ 70
0
votes
0
replies
302
views
How to add enzyme details in Tassel pipeline?
GBS Tassel GBSEnzyme.java
updated 22 months ago by 5.7k • written 22 months ago by ▴ 70
4
votes
7
replies
2.2k
views
How to move the files from sub folder and sub-sub folders into one other folder?
bash
updated 10 weeks ago by 39k • written 23 months ago by ▴ 70
1
vote
1
reply
796
views
what is the meaning of --dta paremeter used in the Hisat2 alignment?
Hisat2
updated 23 months ago by 39k • written 23 months ago by ▴ 70
0
votes
1
reply
562
views
Comment: Comment: extract the ids and key values
23 months ago by mathavanbioinfo ▴ 70
0
votes
4
replies
562
views
extract the ids and key values
extract grep
updated 23 months ago by 7.9k • written 23 months ago by ▴ 70
0
votes
0
replies
1.2k
views
Comment: Comment: How to generate GTF file from BLAST output?
23 months ago by mathavanbioinfo ▴ 70
6
votes
6
replies
1.2k
views
How to generate GTF file from BLAST output?
GTF
23 months ago by mathavanbioinfo ▴ 70
0
votes
0
replies
1.2k
views
Comment: Comment: How to generate GTF file from BLAST output?
23 months ago by mathavanbioinfo ▴ 70
0
votes
1
reply
515
views
Where to get the human mitochondiral reference genome?
GTF human genome mitochondiral
updated 23 months ago by 129k • written 23 months ago by ▴ 70
3
votes
4
replies
927
views
Proportion of RNAseq reads mapping to rRNA, tRNA, mRNA, and intergenic or antisense regions of the genome?
GTF featureCounts NGS GFF
updated 23 months ago by 17k • written 24 months ago by ▴ 70
0
votes
1
reply
480
views
How to view large PPI network in STRING database?
PPI large network STRING
updated 24 months ago by 26k • written 24 months ago by ▴ 70
0
votes
1
reply
927
views
Comment: Comment: Proportion of RNAseq reads mapping to rRNA, tRNA, mRNA, and intergenic or antise
24 months ago by mathavanbioinfo ▴ 70
0
votes
3
replies
782
views
How can I get three letter organism code for cavia porcellus?
GO three KEGG
updated 2.1 years ago by 7.5k • written 2.1 years ago by ▴ 70
0
votes
1
reply
679
views
Comment: Comment: Where I can get the gtf file of antheraea mylitta
2.1 years ago by mathavanbioinfo ▴ 70
5
votes
3
replies
679
views
Where I can get the gtf file of antheraea mylitta
GTF
updated 2.1 years ago by 14k • written 2.1 years ago by ▴ 70
0
votes
0
replies
423
views
Extracting the genes associated drugs?
bank Drug
2.1 years ago by mathavanbioinfo ▴ 70
4
votes
5
replies
1.8k
views
How to download entire human protein sequences from RefSeq database hrough command line?
Refseq programming
updated 2.2 years ago by ★ 3.5k • written 2.2 years ago by ▴ 70
2
votes
2
replies
529
views
How to handle "perbase quality failed" issue?
RNA-Seq fastqc
2.5 years ago by mathavanbioinfo ▴ 70
4
votes
6
replies
2.2k
views
How to perform the lncRNA enrichment analysis?
lncRNA enrichment gene ontology
updated 2.5 years ago by ▴ 150 • written 2.6 years ago by ▴ 70
2
votes
2
replies
708
views
How to identify the 300 kb upstream and downstream genes of lncRNAs?
RNA-Seq lncRNA target genes upstream downstream
updated 2.5 years ago by 13k • written 2.5 years ago by ▴ 70
2
votes
1
reply
800
views
How to extract upstream and downstream of lncRNA in particular range?
RNA-Seq lncRNA hommer bed gtf
updated 2.5 years ago by ▴ 450 • written 2.5 years ago by ▴ 70
0
votes
1
reply
2.2k
views
Comment: A: How to perform the lncRNA enrichment analysis?
2.6 years ago by mathavanbioinfo ▴ 70
1
vote
1
reply
526
views
How to find the gene name and classification using Ensembl ID?
genome ensembl lncRNA
updated 2.6 years ago by 26k • written 2.6 years ago by ▴ 70
0
votes
0
replies
920
views
Comment: C: How create annotation file for WGCNA for RNA-Seq data?
2.9 years ago by mathavanbioinfo ▴ 70
1
vote
2
replies
920
views
How create annotation file for WGCNA for RNA-Seq data?
RNA-Seq WGCNA Annotaion file
updated 2.9 years ago by 85k • written 2.9 years ago by ▴ 70
0
votes
1
reply
830
views
How to make annotation file for WGCNA analysis of RNA Seq data?
next-gen
updated 3.2 years ago by 85k • written 3.2 years ago by ▴ 70
0
votes
2
replies
808
views
DEGS analysis with DESeq2?
DESeq2 DEGs
updated 3.2 years ago by 20 • written 3.3 years ago by ▴ 70
0
votes
0
replies
740
views
lncRNA prediction using CPAT?
CPAT lncRNA
3.2 years ago by mathavanbioinfo ▴ 70
0
votes
0
replies
1.0k
views
Comment: C: CPAT error while analysis
3.2 years ago by mathavanbioinfo ▴ 70
0
votes
1
reply
661
views
DEGs analysis with StringTie results?
StringTie DEGs DESeq2
3.3 years ago by mathavanbioinfo ▴ 70
0
votes
0
replies
1.9k
views
Comment: A: construction of draft genome from the contigs
3.4 years ago by mathavanbioinfo ▴ 70
0
votes
1
reply
1.8k
views
Comment: C: How to get GTF file for Rousettus_aegyptiacus?
3.4 years ago by mathavanbioinfo ▴ 70
1
vote
1
reply
1.8k
views
Comment: A: How to get GTF file for Rousettus_aegyptiacus?
3.4 years ago by mathavanbioinfo ▴ 70
2
votes
8
replies
1.8k
views
How to get GTF file for Rousettus_aegyptiacus?
StringTie GTF Assembly Rousettus aegyptiacus
3.4 years ago by mathavanbioinfo ▴ 70
0
votes
1
reply
750
views
How to construct draft genome of virus using Trinity de novo assembler?
RNA virus amplicons trintiy
3.4 years ago by mathavanbioinfo ▴ 70
0
votes
1
reply
1.8k
views
Comment: C: How to get GTF file for Rousettus_aegyptiacus?
3.4 years ago by mathavanbioinfo ▴ 70
0
votes
4
replies
1.6k
views
How to extract 3', 5' UTR sequences from genbank records using python, PERL and R code?
UTR
updated 3.4 years ago by ▴ 120 • written 3.4 years ago by ▴ 70
0
votes
0
replies
563
views
Comment: C: Is virus specific UTR prediction tool available?
3.5 years ago by mathavanbioinfo ▴ 70
0
votes
2
replies
563
views
Is virus specific UTR prediction tool available?
UTR
3.5 years ago by mathavanbioinfo ▴ 70
84 results • Page 1 of 2
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