User: jordi.planells
jordi.planells • 190
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Posts by jordi.planells
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2
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2
answers
132
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... As far as I know, salmon takes multimappers into account, maybe there you find the difference. Could you align with STAR allowing multimappers, quantify with featureCounts with -M flag and get the correlation again? I am very curious on how this will behave ...
written 2 days ago by
jordi.planells • 190
4
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1
answer
118
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1
answers
... In case anyone faces the same problem, I will paste the code I used to get the plot.
# Subset the dataset into different knockdowns
A = com_sig.df[com_sig.df$Knockdown=="A",]
B = com_sig.df[com_sig.df$Knockdown=="B",]
C = com_sig.df[com_sig.df$Knockdown=="C",]
# Compute the ...
written 3 days ago by
jordi.planells • 190
0
votes
1
answer
118
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1
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... Thank you so much! This work smoothly! I am pasting the code with the answer and closing the question ...
written 3 days ago by
jordi.planells • 190
0
votes
1
answer
118
views
1
answers
... One p-value for each biotype (or boxplot) in each facet. In other words, if I have 6 boxplots per facet, I should get 6 p-values per facet ...
written 4 days ago by
jordi.planells • 190
0
votes
1
answer
118
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1
answers
... Yes indeed, if I specify a reference group all the labels move to the right place!
The problem is that I don't want any reference group, but to compare it to mu=0... It is a wilcoxon one sample test what I would like to do ...
written 4 days ago by
jordi.planells • 190
0
votes
1
answer
118
views
1
answers
... I have tried the compare_means approach and it works, I obtain the kind of data that I am looking for. However, I still don't know how to embed the data into the plot, I tried with `stat_pvalue_manual()` but I have the same problem as with `stat_compare_means()`, that the values are piled up on top ...
written 4 days ago by
jordi.planells • 190
0
votes
1
answer
118
views
1
answers
... Sure! This is the code and the plot I currently have
com = ggboxplot(data = com_sig.df, x = "Sequence_biotype", y = "log2FoldChange", fill = "Sequence_biotype",
facet.by = "Knockdown") +
geom_hline(yintercept = 0, linetype = "dashed", color = "red") +
...
written 4 days ago by
jordi.planells • 190
5
votes
1
answer
118
views
1
answer
... Hi folks! I need your help with a ggplot2 representation.
I have a data set that has the following structure:
log2FoldChange Sequence_biotype Knockdown
-1.40 LTR A
-1.11 DNA B
-3.46 Prote ...
written 5 days ago by
jordi.planells • 190
0
votes
1
answer
109
views
1
answers
... Tank you as well! AWK is awesome and terribly powerful. I will spend some time and try to master it ...
written 9 weeks ago by
jordi.planells • 190
0
votes
1
answer
109
views
1
answers
... Thank you so much, I will give it a try to both the command and the tool! ...
written 9 weeks ago by
jordi.planells • 190
Latest awards to jordi.planells
Teacher
3 days ago,
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For A: One sample Wilcoxon test for each boxplot ggplot2
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For A: One sample Wilcoxon test for each boxplot ggplot2
Epic Question
7 months ago,
created a question with more than 10,000 views.
For geom_bar plot with several variables
Great Question
9 months ago,
created a question with more than 5,000 views.
For geom_bar plot with several variables
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13 months ago,
asked a question with at least 3 up-votes.
For geom_bar plot with several variables
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14 months ago,
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For geom_bar plot with several variables
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