User: jordi.planells

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Posts by jordi.planells

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Answer: A: Why Salmon produces very different quantification results compared with featureC
... As far as I know, salmon takes multimappers into account, maybe there you find the difference. Could you align with STAR allowing multimappers, quantify with featureCounts with -M flag and get the correlation again? I am very curious on how this will behave ...
written 2 days ago by jordi.planells190
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Answer: A: One sample Wilcoxon test for each boxplot ggplot2
... In case anyone faces the same problem, I will paste the code I used to get the plot. # Subset the dataset into different knockdowns A = com_sig.df[com_sig.df$Knockdown=="A",] B = com_sig.df[com_sig.df$Knockdown=="B",] C = com_sig.df[com_sig.df$Knockdown=="C",] # Compute the ...
written 3 days ago by jordi.planells190
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Comment: C: One sample Wilcoxon test for each boxplot ggplot2
... Thank you so much! This work smoothly! I am pasting the code with the answer and closing the question ...
written 3 days ago by jordi.planells190
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Comment: C: One sample Wilcoxon test for each boxplot ggplot2
... One p-value for each biotype (or boxplot) in each facet. In other words, if I have 6 boxplots per facet, I should get 6 p-values per facet ...
written 4 days ago by jordi.planells190
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Comment: C: One sample Wilcoxon test for each boxplot ggplot2
... Yes indeed, if I specify a reference group all the labels move to the right place! The problem is that I don't want any reference group, but to compare it to mu=0... It is a wilcoxon one sample test what I would like to do ...
written 4 days ago by jordi.planells190
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Comment: C: One sample Wilcoxon test for each boxplot ggplot2
... I have tried the compare_means approach and it works, I obtain the kind of data that I am looking for. However, I still don't know how to embed the data into the plot, I tried with `stat_pvalue_manual()` but I have the same problem as with `stat_compare_means()`, that the values are piled up on top ...
written 4 days ago by jordi.planells190
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Comment: C: One sample Wilcoxon test for each boxplot ggplot2
... Sure! This is the code and the plot I currently have com = ggboxplot(data = com_sig.df, x = "Sequence_biotype", y = "log2FoldChange", fill = "Sequence_biotype", facet.by = "Knockdown") + geom_hline(yintercept = 0, linetype = "dashed", color = "red") + ...
written 4 days ago by jordi.planells190
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One sample Wilcoxon test for each boxplot ggplot2
... Hi folks! I need your help with a ggplot2 representation. I have a data set that has the following structure: log2FoldChange Sequence_biotype Knockdown -1.40 LTR A -1.11 DNA B -3.46 Prote ...
R ggplot2 written 5 days ago by jordi.planells190
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Comment: C: string replacement from one file to another
... Tank you as well! AWK is awesome and terribly powerful. I will spend some time and try to master it ...
written 9 weeks ago by jordi.planells190
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Comment: C: string replacement from one file to another
... Thank you so much, I will give it a try to both the command and the tool! ...
written 9 weeks ago by jordi.planells190

Latest awards to jordi.planells

Teacher 3 days ago, created an answer with at least 3 up-votes. For A: One sample Wilcoxon test for each boxplot ggplot2
Scholar 3 days ago, created an answer that has been accepted. For A: One sample Wilcoxon test for each boxplot ggplot2
Epic Question 7 months ago, created a question with more than 10,000 views. For geom_bar plot with several variables
Great Question 9 months ago, created a question with more than 5,000 views. For geom_bar plot with several variables
Student 13 months ago, asked a question with at least 3 up-votes. For geom_bar plot with several variables
Popular Question 14 months ago, created a question with more than 1,000 views. For geom_bar plot with several variables

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