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Deeptools clustering differs when clustering sample as standalone and together with other samples
deepTools
9 weeks ago by jordi.planells ▴ 450
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271
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Understanding HiC compartimentalization data
HiC
18 months ago by jordi.planells ▴ 450
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1
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1.3k
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Comment: Comment: Picard MarkDuplicates failing without error message
23 months ago by jordi.planells ▴ 450
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2
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1.3k
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Comment: Comment: Picard MarkDuplicates failing without error message
23 months ago by jordi.planells ▴ 450
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1
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812
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Comment: Comment: How to achieve the goal "only genes with non-zero expression values in at least
2.1 years ago by jordi.planells ▴ 450
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1
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831
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Comment: Comment: how to create matrix from row data.
2.1 years ago by jordi.planells ▴ 450
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746
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Answer: Answer: How to add GO annotation terms (molecular function, component, biological proces
2.1 years ago by jordi.planells ▴ 450
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1
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1.3k
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Comment: C: Bowtie2: Mate file error & internal exception
2.2 years ago by jordi.planells ▴ 450
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1
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706
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Comment: C: Select and keep only some results from DESEq2
2.2 years ago by jordi.planells ▴ 450
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1
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706
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Comment: C: Select and keep only some results from DESEq2
2.2 years ago by jordi.planells ▴ 450
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0
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747
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Comment: C: Read count using htseq-count.
2.2 years ago by jordi.planells ▴ 450
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0
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747
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Comment: C: Read count using htseq-count.
2.2 years ago by jordi.planells ▴ 450
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1
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924
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Comment: C: Getting the fasta format of a list of genes
2.2 years ago by jordi.planells ▴ 450
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1
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678
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Answer: A: The parameter of HISAT2 and samtools
2.2 years ago by jordi.planells ▴ 450
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0
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799
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Comment: C: Change sample order in plotHeatmap?
2.3 years ago by jordi.planells ▴ 450
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2
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799
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Comment: C: Change sample order in plotHeatmap?
2.3 years ago by jordi.planells ▴ 450
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1
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621
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Comment: C: Calculating fold change...CONFUSION
2.3 years ago by jordi.planells ▴ 450
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992
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Answer: A: Filtering of transcripts with more than two exons
2.3 years ago by jordi.planells ▴ 450
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744
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Comment: C: DESeq2 for DEG in R
2.3 years ago by jordi.planells ▴ 450
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1
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744
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Comment: C: DESeq2 for DEG in R
2.3 years ago by jordi.planells ▴ 450
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1
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707
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Comment: C: Huge difference between P and adj P value
2.3 years ago by jordi.planells ▴ 450
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0
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948
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Comment: C: bigwigs to reads in peaks
2.4 years ago by jordi.planells ▴ 450
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1
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948
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Comment: C: bigwigs to reads in peaks
2.4 years ago by jordi.planells ▴ 450
1
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0
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738
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Answer: A: How to map reads onto human hg38 gene body regions instead of whole genome?
2.4 years ago by jordi.planells ▴ 450
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1
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923
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Comment: C: Interpretation of PCA plot
2.5 years ago by jordi.planells ▴ 450
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1
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923
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Comment: C: Interpretation of PCA plot
2.5 years ago by jordi.planells ▴ 450
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1
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1.2k
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Comment: C: No coverage in macs2 peak summit!
2.5 years ago by jordi.planells ▴ 450
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0
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726
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Comment: C: Principle component analysis
2.5 years ago by jordi.planells ▴ 450
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2
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726
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Comment: C: Principle component ananlysis
2.5 years ago by jordi.planells ▴ 450
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0
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635
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Comment: C: DESeq2 discrepancy between analysis.
2.5 years ago by jordi.planells ▴ 450
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2
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635
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DESeq2 discrepancy between analysis.
R RNA-Seq DESeq2
updated 2.5 years ago by 13k • written 2.5 years ago by ▴ 450
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0
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688
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Comment: C: How to evaluate gene expression
2.5 years ago by jordi.planells ▴ 450
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1
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688
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Comment: C: How to evaluate gene expression
2.5 years ago by jordi.planells ▴ 450
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1
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688
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Comment: C: How to evaluate gene expression
2.5 years ago by jordi.planells ▴ 450
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0
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940
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Answer: A: Calculate library complexity for Chip sep data
2.5 years ago by jordi.planells ▴ 450
1
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1
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5.6k
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Comment: C: Removing fastq duplicates
updated 2.5 years ago by 39k • written 2.5 years ago by ▴ 450
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0
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681
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Comment: C: how to get input file of closest-features a bed-format file
2.5 years ago by jordi.planells ▴ 450
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1
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681
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Comment: C: how to get input file of closest-features a bed-format file
2.5 years ago by jordi.planells ▴ 450
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0
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391
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Answer: A: Find cooccurences of factors across multiple files
2.5 years ago by jordi.planells ▴ 450
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0
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705
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Comment: C: Knock out genes and TPM
2.5 years ago by jordi.planells ▴ 450
2
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1
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705
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Comment: C: Knock out genes and TPM
2.5 years ago by jordi.planells ▴ 450
1
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1
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705
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Comment: C: Knock out genes and TPM
2.5 years ago by jordi.planells ▴ 450
2
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0
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799
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Answer: A: How to extract upstream and downstream of lncRNA in particular range?
2.5 years ago by jordi.planells ▴ 450
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1
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681
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Comment: A: how to get input file of closest-features a bed-format file
2.5 years ago by jordi.planells ▴ 450
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0
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817
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Answer: A: Pilon software installation
2.5 years ago by jordi.planells ▴ 450
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0
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1.0k
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Answer: A: intersect two file
2.5 years ago by jordi.planells ▴ 450
1
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0
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579
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Answer: A: Counts plot does not match fold change between groups
2.5 years ago by jordi.planells ▴ 450
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1
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1.0k
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Comment: C: How to find differential expression in lowly expressed transcripts?
2.8 years ago by jordi.planells ▴ 450
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0
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1.7k
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Answer: A: checking overlap between two genomic coordinates
2.8 years ago by jordi.planells ▴ 450
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0
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1.3k
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Comment: C: SRA tool kit
2.9 years ago by jordi.planells ▴ 450
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