User: boaty

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boaty60
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Posts by boaty

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Comment: C: Count amino acid in protein sequence in R
... this is an advice from a real expert! YES, a scoring strategy, this is what i want to do after all exploratory analysis ...
written 25 days ago by boaty60
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Comment: C: Count amino acid in protein sequence in R
... sorry for it. it's done now ...
written 25 days ago by boaty60
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Comment: C: Count amino acid in protein sequence in R
... thanks ATpoint, by using your suggestion, I got very good result. Thank you. here's my code for my counting : peptide_count <- lapply(peptides, function(x) {#peptides, a list of peptides peptide=x length(unique(c(ranges(matchPattern(peptide, AAString(prot_seq))), #prot_seq : prot ...
written 25 days ago by boaty60
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Comment: C: count amino acid in protein sequence in R
... thanks Bastien, sorry my question was unclear. I want `str_count("AAA","AA")` to result as 2 counts. for instance, "AAAAAA" will give 5 counts and "AARAAGAAN" gives us 3 counts. This counting strategy will give continuous peptide (like "AAAAAA") more counts. ...
written 26 days ago by boaty60
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Count amino acid in protein sequence in R
... Hello, Is there any tools to count occurrence of amino acid in protein sequence like this: string_count("AAA","AA")#count "AA" in sequence "AAA" [1] 2 #result, so 2 "AA" I used stringr package but it gives us this: library(stringr) str_count("AAA","AA") [1] 1 #result, only 1 ...
count protein R written 26 days ago by boaty60 • updated 25 days ago by zx87546.8k
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why polyQ are not part of intrisicaly disordered region (IDR) in disopred3 prediction?
... hello guys, I ran my protein sequence on psipred server to prediction IDR on my input protein sequence (using disopred option) ![figure1][1] ![figure2][2] polyQ and polyP is known to be structurally unstable, but disopred here just remove them from a large IDR region. So there's holes in the left ...
idr disopred prediction protein psipred written 9 weeks ago by boaty60
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Answer: A: guidance for communication online seach engine with python or R script?
... yes, i answer my question I asked 8 months ago. I want to write a script of auto online search which links FISH probe design program of FISH-quant tools. So our biologists who only have Windows can perform probe design script by themselves. main python tools used is selenium, a excellent web tool f ...
written 3 months ago by boaty60
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Comment: C: guidance for communication online seach engine with python or R script?
... sorry, l tried to use a metaphor from programmers community ...
written 12 months ago by boaty60
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guidance for communication online seach engine with python or R script?
... Hi guys, I'm looking for some python packages or R packages to communicate repeatMasker online service from local script. Yes, I can run repeatMasker locally but I don't trouble myself with database update. I am a lazy person, so, instead of upload fasta then download result manually, I am wonderi ...
python rna-seq online search engine repeatmasker written 12 months ago by boaty60
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Comment: C: is it meaningless for comparing averages from data with different sample size?
... ![enter image description here][1]thank your mmfansler, the linear model was the first thing i thought to find out the relationship between count and FC, but i give up after plot all points on the same figure, it is not linear at all. Your suggestion about cocks.distance() is great, at least gives ...
written 13 months ago by boaty60

Latest awards to boaty

Scholar 3 months ago, created an answer that has been accepted. For A: guidance for communication online seach engine with python or R script?
Teacher 3 months ago, created an answer with at least 3 up-votes. For A: guidance for communication online seach engine with python or R script?

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