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Answer: Answer: Clumping error Plink
2.3 years ago by Sam ★ 4.7k
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961
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Comment: Comment: UK Biobank difference in number of patients diagnosed in field 41270 vs extracte
2.3 years ago by Sam ★ 4.7k
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Comment: Comment: GWAS with SAIGE - how to proceed
2.3 years ago by Sam ★ 4.7k
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554
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Comment: Comment: Insertion/Deletion in R
2.3 years ago by Sam ★ 4.7k
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634
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Answer: Answer: Difference between LDpred1,PT+Clump,Lassosum methods
2.3 years ago by Sam ★ 4.7k
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622
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Comment: Comment: Change SNP ID strings in PLINK files
2.3 years ago by Sam ★ 4.7k
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1.3k
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Comment: Comment: GWAS with SAIGE - how to proceed
2.3 years ago by Sam ★ 4.7k
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1.7k
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Comment: Comment: Polygenic Risk Score Calculation: Do we need to apply the same p-value threshold
2.3 years ago by Sam ★ 4.7k
3
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1.7k
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Answer: Answer: Polygenic Risk Score Calculation: Do we need to apply the same p-value threshold
2.3 years ago by Sam ★ 4.7k
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3.5k
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Comment: Comment: Could NOT find ZLIB while running cmake
2.3 years ago by Sam ★ 4.7k
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3.8k
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Comment: Comment: How to add phenotypic data to .fam in plink (specifically, assign 1 and 2 to cas
2.4 years ago by Sam ★ 4.7k
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3.8k
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Comment: Comment: How to add phenotypic data to .fam in plink (specifically, assign 1 and 2 to cas
2.4 years ago by Sam ★ 4.7k
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3
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3.8k
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Answer: Answer: How to add phenotypic data to .fam in plink (specifically, assign 1 and 2 to cas
2.4 years ago by Sam ★ 4.7k
2
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782
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Answer: Answer: Liftover using gVCF
2.4 years ago by Sam ★ 4.7k
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1.4k
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Comment: Comment: Polygenetic risk score construction in UKBB
2.4 years ago by Sam ★ 4.7k
1
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773
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Answer: Answer: How can I make sure certain SNPs are not removed during the clumping stage of PR
2.4 years ago by Sam ★ 4.7k
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1.8k
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Comment: Comment: Polygenetic Risk Score Calculation
2.4 years ago by Sam ★ 4.7k
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1
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1.8k
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Answer: Answer: Polygenetic Risk Score Calculation
2.4 years ago by Sam ★ 4.7k
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1.5k
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Comment: Comment: One-hot encoding for PLINK or VCF
2.4 years ago by Sam ★ 4.7k
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1.5k
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Comment: Comment: One-hot encoding for PLINK or VCF
2.4 years ago by Sam ★ 4.7k
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3.6k
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Answer: Answer: nextflow DSL2: best practice to design and reuse a process/worfklow
2.4 years ago by Sam ★ 4.7k
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1
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1.4k
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Comment: Comment: Polygenetic risk score construction in UKBB
2.4 years ago by Sam ★ 4.7k
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1.4k
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Comment: Comment: Polygenetic risk score construction in UKBB
2.4 years ago by Sam ★ 4.7k
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1
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2.6k
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Comment: Comment: Calculating polygenic score using plink
2.4 years ago by Sam ★ 4.7k
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1.0k
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Comment: Comment: Gwas Help.
2.4 years ago by Sam ★ 4.7k
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2.6k
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Answer: Answer: Calculating polygenic score using plink
2.4 years ago by Sam ★ 4.7k
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0
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1.6k
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Comment: Comment: Many SNPs getting excluded during PRSice 2 analysis
2.4 years ago by Sam ★ 4.7k
2
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1.6k
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Answer: Answer: Many SNPs getting excluded during PRSice 2 analysis
2.4 years ago by Sam ★ 4.7k
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0
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962
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Answer: Answer: PRSice 2 results
2.4 years ago by Sam ★ 4.7k
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1.1k
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Answer: Answer: How to analyze genotype data and imputed data in GWAS study
2.4 years ago by Sam ★ 4.7k
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2.1k
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Comment: Comment: Plink2 --keep Removing All Samples
2.5 years ago by Sam ★ 4.7k
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0
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1.1k
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Comment: Comment: Getting error at the clumping stage of PRSice 2
2.5 years ago by Sam ★ 4.7k
2
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1
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1.1k
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Answer: Answer: Getting error at the clumping stage of PRSice 2
2.5 years ago by Sam ★ 4.7k
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0
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923
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Comment: Comment: Polygenic scores in diabetic individuals across UKBB
2.5 years ago by Sam ★ 4.7k
2
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1
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923
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Answer: Answer: Polygenic scores in diabetic individuals across UKBB
2.5 years ago by Sam ★ 4.7k
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3.4k
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Comment: Comment: GWAS - Relationship between Standard Error and P-value
2.5 years ago by Sam ★ 4.7k
0
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1
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2.5k
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Comment: Comment: how to improve PCA visualization using ggplot?
2.5 years ago by Sam ★ 4.7k
5
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1
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2.5k
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Answer: Answer: how to improve PCA visualization using ggplot?
2.5 years ago by Sam ★ 4.7k
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1
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3.1k
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Comment: Comment: PRSice 2
2.5 years ago by Sam ★ 4.7k
1
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1
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3.1k
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Comment: Comment: PRSice 2
2.5 years ago by Sam ★ 4.7k
1
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1
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3.1k
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Comment: Comment: PRSice 2
2.5 years ago by Sam ★ 4.7k
2
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1
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1.6k
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Answer: Answer: (LDSC) - Munge Error - ValueError: could not convert string to float: OR
2.5 years ago by Sam ★ 4.7k
2
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1
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3.1k
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Answer: Answer: PRSice 2
2.5 years ago by Sam ★ 4.7k
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714
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Comment: Comment: 8 Million SNPs in Whole Exome Sequencing vcf file
2.5 years ago by Sam ★ 4.7k
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587
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Answer: Answer: Using IMPUTED genotype data from UK Biobank to generate PRS scores using PRSice
2.5 years ago by Sam ★ 4.7k
1
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0
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692
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Answer: Answer: shell --- while
2.5 years ago by Sam ★ 4.7k
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1.0k
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Answer: Answer: shell --array in while loop
2.5 years ago by Sam ★ 4.7k
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1
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719
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Comment: Comment: GWAS Studies
2.5 years ago by Sam ★ 4.7k
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1
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2.7k
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Comment: Comment: PLINK basic command line usage
2.6 years ago by Sam ★ 4.7k
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0
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4.1k
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Comment: Comment: PRS in UK Biobank - no covariate file and no phenotype file
2.6 years ago by Sam ★ 4.7k
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