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Comment: C: Union of unaligned fastq reads
8.3 years ago by Jeffin Rockey ★ 1.3k
1
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1
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2.3k
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Comment: C: Union of unaligned fastq reads
8.3 years ago by Jeffin Rockey ★ 1.3k
1
vote
0
replies
2.3k
views
Comment: C: Union of unaligned fastq reads
8.3 years ago by Jeffin Rockey ★ 1.3k
1
vote
1
reply
2.3k
views
Comment: C: Union of unaligned fastq reads
8.3 years ago by Jeffin Rockey ★ 1.3k
9
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8
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2.3k
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Union of unaligned fastq reads
RNA-Seq
8.3 years ago by Jeffin Rockey ★ 1.3k
2
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0
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2.6k
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Answer: A: to much time for using cufflinks
8.3 years ago by Jeffin Rockey ★ 1.3k
4
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1
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6.2k
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Answer: A: Faster way to get coverage per base
8.5 years ago by Jeffin Rockey ★ 1.3k
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0
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2.5k
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Comment: C: error in bowtie 2
8.6 years ago by Jeffin Rockey ★ 1.3k
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3.3k
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Answer: A: From GTF file to GFF file (searching for all 5'UTRs, multiple UTRs per transcrip
8.6 years ago by Jeffin Rockey ★ 1.3k
0
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0
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7.2k
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Answer: A: CONVERT GFF TO GTF
8.7 years ago by Jeffin Rockey ★ 1.3k
1
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1
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3.2k
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Answer: A: BAM to fastq with Tophat aligned files
8.7 years ago by Jeffin Rockey ★ 1.3k
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0
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2.1k
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Answer: A: intersectBed - multiple intersections
8.7 years ago by Jeffin Rockey ★ 1.3k
0
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0
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19k
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Answer: A: Converting from BED to SAF/GFF
8.7 years ago by Jeffin Rockey ★ 1.3k
2
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1
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3.1k
views
Answer: A: coverage on exons with bedtools genomecov
updated 8.8 years ago by 153k • written 8.8 years ago by ★ 1.3k
0
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0
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7.5k
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Comment: C: Extract exon and splice site information from gff files for HISAT analysis
8.8 years ago by Jeffin Rockey ★ 1.3k
2
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1
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7.5k
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Answer: A: Extract exon and splice site information from gff files for HISAT analysis
8.8 years ago by Jeffin Rockey ★ 1.3k
0
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0
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3.6k
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Comment: C: Can I use HTSeq-count with a merged.gtf files I created with Cuffmerge?
8.8 years ago by Jeffin Rockey ★ 1.3k
0
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0
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2.6k
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Answer: A: Extraction of Intergenic Regions and Features from Gene Coordinates and Gene Det
8.8 years ago by Jeffin Rockey ★ 1.3k
1
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0
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2.0k
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Comment: C: coverageBed / Prokka help
8.9 years ago by Jeffin Rockey ★ 1.3k
2
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0
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8.3k
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Answer: A: Script to sort bam file not working
8.9 years ago by Jeffin Rockey ★ 1.3k
1
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0
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18k
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Answer: A: Tophat error: missing .bt2l but I only have .bt2 files
8.9 years ago by Jeffin Rockey ★ 1.3k
2
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1
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2.0k
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Answer: A: Mapping /Need software
8.9 years ago by Jeffin Rockey ★ 1.3k
1
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4.7k
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Answer: A: Recommended doc for interpreting STAR alignment stats
8.9 years ago by Jeffin Rockey ★ 1.3k
0
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0
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1.4k
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Comment: A: For cufflinks error of using gff files
8.9 years ago by Jeffin Rockey ★ 1.3k
0
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0
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9.9k
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Comment: C: ChIP-Seq TSS Line Plot
9.0 years ago by Jeffin Rockey ★ 1.3k
0
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0
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1.4k
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Answer: A: Quick question about Cuffdiff assembly option
9.0 years ago by Jeffin Rockey ★ 1.3k
1
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0
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6.1k
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Answer: A: CNV caller software
9.0 years ago by Jeffin Rockey ★ 1.3k
0
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0
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3.1k
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Answer: A: RNA-seq for bacteria
9.0 years ago by Jeffin Rockey ★ 1.3k
1
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0
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2.4k
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Comment: C: cn-mops Error "Missing refSeqName"
9.0 years ago by Jeffin Rockey ★ 1.3k
1
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0
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2.7k
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Answer: A: Cuffflinks installation problem
updated 9.0 years ago by 153k • written 9.0 years ago by ★ 1.3k
2
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1
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3.5k
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Comment: C: Extract all BED intervals between genomic coordinates
9.0 years ago by Jeffin Rockey ★ 1.3k
0
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0
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7.3k
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Comment: C: Hg38 TSS .bed/.gtf file for chipseq analysis
9.0 years ago by Jeffin Rockey ★ 1.3k
0
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1
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7.3k
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Comment: C: Hg38 TSS .bed/.gtf file for chipseq analysis
9.0 years ago by Jeffin Rockey ★ 1.3k
0
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1
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7.3k
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Comment: C: Hg38 TSS .bed/.gtf file for chipseq analysis
9.0 years ago by Jeffin Rockey ★ 1.3k
2
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0
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3.5k
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Answer: A: parsing through gtf file
9.1 years ago by Jeffin Rockey ★ 1.3k
0
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0
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2.8k
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Answer: A: How to find % alignment of total reads to genic region?
9.1 years ago by Jeffin Rockey ★ 1.3k
0
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0
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3.1k
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Comment: C: Get location annotation information from SNP position in genome
9.1 years ago by Jeffin Rockey ★ 1.3k
2
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1
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3.1k
views
Comment: C: Get location annotation information from SNP position in genome
9.1 years ago by Jeffin Rockey ★ 1.3k
2
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1
reply
4.6k
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Answer: A: Maximum spliced alignment overhang in STAR output
9.1 years ago by Jeffin Rockey ★ 1.3k
0
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1
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40k
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Comment: C: SAM FLAG for primary alignments, secondary alignments and what's their relations
9.1 years ago by Jeffin Rockey ★ 1.3k
0
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1
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40k
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Comment: C: SAM FLAG for primary alignments, secondary alignments and what's their relations
9.1 years ago by Jeffin Rockey ★ 1.3k
25
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2
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40k
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Answer: A: SAM FLAG for primary alignments, secondary alignments and what's their relations
9.1 years ago by Jeffin Rockey ★ 1.3k
1
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0
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2.9k
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Comment: C: Cuffdiff hangs at "Inspecting maps and determining fragment length distributions
9.1 years ago by Jeffin Rockey ★ 1.3k
0
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1
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5.4k
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Answer: A: Mapping with Tophat
9.2 years ago by Jeffin Rockey ★ 1.3k
0
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1
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5.1k
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Comment: C: Analyzing types of Junctions from BAM and GTF files
9.3 years ago by Jeffin Rockey ★ 1.3k
2
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1
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5.1k
views
Answer: A: Analyzing types of Junctions from BAM and GTF files
9.3 years ago by Jeffin Rockey ★ 1.3k
146 results • Page 3 of 3
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