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1.7k
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Comment: C: Union of unaligned fastq reads
6.9 years ago by Jeffin Rockey ★ 1.3k
9
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8
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1.7k
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Union of unaligned fastq reads
RNA-Seq
6.9 years ago by Jeffin Rockey ★ 1.3k
2
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0
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2.1k
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Answer: A: to much time for using cufflinks
6.9 years ago by Jeffin Rockey ★ 1.3k
4
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1
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4.8k
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Answer: A: Faster way to get coverage per base
7.1 years ago by Jeffin Rockey ★ 1.3k
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0
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2.0k
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Comment: C: error in bowtie 2
7.2 years ago by Jeffin Rockey ★ 1.3k
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0
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2.7k
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Answer: A: From GTF file to GFF file (searching for all 5'UTRs, multiple UTRs per transcrip
7.2 years ago by Jeffin Rockey ★ 1.3k
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0
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6.6k
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Answer: A: CONVERT GFF TO GTF
7.3 years ago by Jeffin Rockey ★ 1.3k
1
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1
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2.8k
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Answer: A: BAM to fastq with Tophat aligned files
7.3 years ago by Jeffin Rockey ★ 1.3k
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0
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1.7k
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Answer: A: intersectBed - multiple intersections
7.3 years ago by Jeffin Rockey ★ 1.3k
0
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0
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15k
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Answer: A: Converting from BED to SAF/GFF
7.4 years ago by Jeffin Rockey ★ 1.3k
2
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1
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2.7k
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Answer: A: coverage on exons with bedtools genomecov
updated 7.4 years ago by 141k • written 7.4 years ago by ★ 1.3k
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0
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6.9k
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Comment: C: Extract exon and splice site information from gff files for HISAT analysis
7.4 years ago by Jeffin Rockey ★ 1.3k
2
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1
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6.9k
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Answer: A: Extract exon and splice site information from gff files for HISAT analysis
7.4 years ago by Jeffin Rockey ★ 1.3k
0
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0
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2.9k
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Comment: C: Can I use HTSeq-count with a merged.gtf files I created with Cuffmerge?
7.4 years ago by Jeffin Rockey ★ 1.3k
0
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0
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2.2k
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Answer: A: Extraction of Intergenic Regions and Features from Gene Coordinates and Gene Det
7.5 years ago by Jeffin Rockey ★ 1.3k
1
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0
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1.7k
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Comment: C: coverageBed / Prokka help
7.5 years ago by Jeffin Rockey ★ 1.3k
2
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0
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7.3k
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Answer: A: Script to sort bam file not working
7.5 years ago by Jeffin Rockey ★ 1.3k
1
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0
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16k
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Answer: A: Tophat error: missing .bt2l but I only have .bt2 files
7.5 years ago by Jeffin Rockey ★ 1.3k
2
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1
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1.5k
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Answer: A: Mapping /Need software
7.5 years ago by Jeffin Rockey ★ 1.3k
1
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0
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4.1k
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Answer: A: Recommended doc for interpreting STAR alignment stats
7.5 years ago by Jeffin Rockey ★ 1.3k
0
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0
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1.2k
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Comment: A: For cufflinks error of using gff files
7.5 years ago by Jeffin Rockey ★ 1.3k
0
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0
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8.0k
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Comment: C: ChIP-Seq TSS Line Plot
7.6 years ago by Jeffin Rockey ★ 1.3k
0
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0
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1.2k
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Answer: A: Quick question about Cuffdiff assembly option
7.6 years ago by Jeffin Rockey ★ 1.3k
1
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0
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5.2k
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Answer: A: CNV caller software
7.6 years ago by Jeffin Rockey ★ 1.3k
0
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0
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2.6k
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Answer: A: RNA-seq for bacteria
7.6 years ago by Jeffin Rockey ★ 1.3k
1
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0
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2.0k
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Comment: C: cn-mops Error "Missing refSeqName"
7.7 years ago by Jeffin Rockey ★ 1.3k
1
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0
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2.3k
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Answer: A: Cuffflinks installation problem
updated 7.7 years ago by 141k • written 7.7 years ago by ★ 1.3k
2
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1
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3.1k
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Comment: C: Extract all BED intervals between genomic coordinates
7.7 years ago by Jeffin Rockey ★ 1.3k
0
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0
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6.0k
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Comment: C: Hg38 TSS .bed/.gtf file for chipseq analysis
7.7 years ago by Jeffin Rockey ★ 1.3k
0
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1
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6.0k
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Comment: C: Hg38 TSS .bed/.gtf file for chipseq analysis
7.7 years ago by Jeffin Rockey ★ 1.3k
0
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1
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6.0k
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Comment: C: Hg38 TSS .bed/.gtf file for chipseq analysis
7.7 years ago by Jeffin Rockey ★ 1.3k
2
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0
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2.8k
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Answer: A: parsing through gtf file
7.7 years ago by Jeffin Rockey ★ 1.3k
0
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0
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2.3k
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Answer: A: How to find % alignment of total reads to genic region?
7.7 years ago by Jeffin Rockey ★ 1.3k
0
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0
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2.7k
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Comment: C: Get location annotation information from SNP position in genome
7.7 years ago by Jeffin Rockey ★ 1.3k
2
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1
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2.7k
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Comment: C: Get location annotation information from SNP position in genome
7.7 years ago by Jeffin Rockey ★ 1.3k
2
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1
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4.0k
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Answer: A: Maximum spliced alignment overhang in STAR output
7.7 years ago by Jeffin Rockey ★ 1.3k
0
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1
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34k
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Comment: C: SAM FLAG for primary alignments, secondary alignments and what's their relations
7.7 years ago by Jeffin Rockey ★ 1.3k
0
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1
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34k
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Comment: C: SAM FLAG for primary alignments, secondary alignments and what's their relations
7.7 years ago by Jeffin Rockey ★ 1.3k
25
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2
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34k
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Answer: A: SAM FLAG for primary alignments, secondary alignments and what's their relations
7.7 years ago by Jeffin Rockey ★ 1.3k
1
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0
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2.6k
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Comment: C: Cuffdiff hangs at "Inspecting maps and determining fragment length distributions
7.7 years ago by Jeffin Rockey ★ 1.3k
0
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1
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4.4k
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Answer: A: Mapping with Tophat
7.9 years ago by Jeffin Rockey ★ 1.3k
0
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1
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4.2k
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Comment: C: Analyzing types of Junctions from BAM and GTF files
7.9 years ago by Jeffin Rockey ★ 1.3k
2
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1
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4.2k
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Answer: A: Analyzing types of Junctions from BAM and GTF files
7.9 years ago by Jeffin Rockey ★ 1.3k
143 results • Page 3 of 3
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