User: ahmad mousavi

gravatar for ahmad mousavi
ahmad mousavi480
Reputation:
480
Status:
Trusted
Location:
Royan Institute, Tehran, Iran
Website:
https://www.linkedin.c...
Last seen:
2 months, 4 weeks ago
Joined:
4 years, 3 months ago
Email:
a*************@gmail.com

Posts by ahmad mousavi

<prev • 75 results • page 1 of 8 • next >
1
vote
1
answer
169
views
1
answer
How to make annotation (GFF/GTF) for transcriptome?
... Hi I have a de novo transcriptome file and partial genome file which I need to make a (GFF/GTF) annotation map based on both transcriptome and draft genome information. I have includes both scaffolds from Trinity and StringTie in order to make a comprehensive transcriptome. Nqow I need to make ann ...
assembly alignment rna-seq sequencing written 3 months ago by ahmad mousavi480 • updated 3 months ago by Juke344.7k
0
votes
1
answer
261
views
1
answers
Comment: C: Bacterial RNAseq - Help for beginner
... I have changed to other one !! ...
written 5 months ago by ahmad mousavi480
0
votes
1
answer
261
views
1
answers
Answer: A: Bacterial RNAseq - Help for beginner
... Check following links: https://www.bioconductor.org/packages/devel/workflows/vignettes/rnaseqGene/inst/doc/rnaseqGene.html https://galaxyproject.github.io/training-material/topics/transcriptomics/tutorials/ref-based/tutorial.html#mapping https://www.melbournebioinformatics.org.au/tutorials/tutor ...
written 5 months ago by ahmad mousavi480
0
votes
0
answers
89
views
0
answers
How to make comparison between human and mouse pathways for a gene list?
... Hi I have got a gene list in human and I wanted to know its function/pathways/GO in mouse. Because in many cases we don't have same genes in mouse or functions is differ. **Is it possible to do such comparison and how ?** Thanks. ...
rna-seq written 5 months ago by ahmad mousavi480
0
votes
2
answers
3.4k
views
2
answers
Comment: C: How to make k-means clustering plot for relative expression?
... ~~ your welcome !!!! ...
written 5 months ago by ahmad mousavi480
0
votes
1
answer
392
views
1
answers
Comment: C: How to make GFF file based on assembled transcriptome and genome sequence?
... Yes we done Maker before, but our genome is partial too, so at the moment we performed Trinity and we have to make GFF based on Genome file. the gmap gff3 output is also good but I have no idea how to merged that with genome sequence to find exon, intron and TSS regions? ...
written 6 months ago by ahmad mousavi480
0
votes
1
answer
392
views
1
answers
Comment: C: How to make GFF file based on assembled transcriptome and genome sequence?
... great thanks, the problem is that my genome is also not complete too.the current pipeline cannot find the exact region such as TSS or Exon,.... Do you have any idea about softwares which could determine those regions? tnx. ...
written 6 months ago by ahmad mousavi480
3
votes
1
answer
392
views
1
answer
How to make GFF file based on assembled transcriptome and genome sequence?
... Hi I have made an denovo transcriptome using Trinity and also the specie has the draft genome too. For next projects ., We want to make GFF/GTF based on both assembled transcriptome and draft genome. Actually, I need to know coordination of genes based on draft genome sequence position. How can ...
assembly chip-seq rna-seq sequencing written 6 months ago by ahmad mousavi480 • updated 6 months ago by h.mon31k
1
vote
1
answer
1.2k
views
1
answers
Comment: C: How to merge microarray and RNA-SEQ expression data for DEG analysis?
... thanks a lot, Kevin. ...
written 21 months ago by ahmad mousavi480
4
votes
1
answer
1.2k
views
1
answer
How to merge microarray and RNA-SEQ expression data for DEG analysis?
... Dear all, I'm doing a project which I have to use two separate project on GEO, one of them is Agilent array and second is RNA-Seq. I've searched a lot, but there were no straightforward answer to my question. Because both condition samples are not available in a single project I have to use diffe ...
expression microarray rna-seq written 21 months ago by ahmad mousavi480 • updated 21 months ago by Kevin Blighe65k

Latest awards to ahmad mousavi

Supporter 3 months ago, voted at least 25 times.
Popular Question 3 months ago, created a question with more than 1,000 views. For Problem with annovar in GATK4 output
Great Question 3 months ago, created a question with more than 5,000 views. For Easy way to do GO enrichment in R
Appreciated 5 months ago, created a post with more than 5 votes. For Showing up and down regulated GO and pathway using enrichR and ggplot2
Popular Question 7 months ago, created a question with more than 1,000 views. For Converting Blast output to GFF
Popular Question 8 months ago, created a question with more than 1,000 views. For How to make k-means clustering plot for relative expression?
Popular Question 9 months ago, created a question with more than 1,000 views. For Problem with annovar in GATK4 output
Popular Question 18 months ago, created a question with more than 1,000 views. For Problem with methylKit and Bismark
Popular Question 18 months ago, created a question with more than 1,000 views. For Using gVCF mode in HaplotypeCaller ( GATK4)
Popular Question 18 months ago, created a question with more than 1,000 views. For What are the best tools for visualizing DNA methylation result?
Popular Question 18 months ago, created a question with more than 1,000 views. For How to make k-means clustering plot for relative expression?
Popular Question 18 months ago, created a question with more than 1,000 views. For Easy way to do GO enrichment in R
Popular Question 18 months ago, created a question with more than 1,000 views. For Error in methylKit in DMR analysis
Popular Question 18 months ago, created a question with more than 1,000 views. For tophat2 "Broken pipe error"
Popular Question 18 months ago, created a question with more than 1,000 views. For How to do feature selection using PCA?
Teacher 18 months ago, created an answer with at least 3 up-votes. For A: How to make k-means clustering plot for relative expression?
Appreciated 19 months ago, created a post with more than 5 votes. For Showing up and down regulated GO and pathway using enrichR and ggplot2
Scholar 22 months ago, created an answer that has been accepted. For A: Extract a word from inside the text
Appreciated 22 months ago, created a post with more than 5 votes. For Showing up and down regulated GO and pathway using enrichR and ggplot2
Scholar 22 months ago, created an answer that has been accepted. For A: Extract a word from inside the text
Teacher 22 months ago, created an answer with at least 3 up-votes. For A: How to make k-means clustering plot for relative expression?
Scholar 22 months ago, created an answer that has been accepted. For A: Extract a word from inside the text
Teacher 23 months ago, created an answer with at least 3 up-votes. For A: How to make k-means clustering plot for relative expression?
Popular Question 2.0 years ago, created a question with more than 1,000 views. For Using gVCF mode in HaplotypeCaller ( GATK4)
Popular Question 2.0 years ago, created a question with more than 1,000 views. For Easy way to do GO enrichment in R

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 995 users visited in the last hour