User: ahmad mousavi

gravatar for ahmad mousavi
ahmad mousavi410
Reputation:
410
Status:
Trusted
Location:
Royan Institute, Tehran, Iran
Website:
https://www.linkedin.c...
Last seen:
1 week ago
Joined:
2 years, 9 months ago
Email:
a*************@gmail.com

Posts by ahmad mousavi

<prev • 67 results • page 1 of 7 • next >
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Comment: C: How to merge microarray and RNA-SEQ expression data for DEG analysis?
... thanks a lot, Kevin. ...
written 11 weeks ago by ahmad mousavi410
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How to merge microarray and RNA-SEQ expression data for DEG analysis?
... Dear all, I'm doing a project which I have to use two separate project on GEO, one of them is Agilent array and second is RNA-Seq. I've searched a lot, but there were no straightforward answer to my question. Because both condition samples are not available in a single project I have to use diffe ...
expression microarray rna-seq written 11 weeks ago by ahmad mousavi410 • updated 11 weeks ago by Kevin Blighe39k
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Answer: A: Differential expression analysis on miRNA count files
... Hi First use HTSeq-count program on Human miRNA GTF file (in mirbase website) to get a count matrix from bam/sam files. Then you could use DESeq2 or edgeR for DE analysis on miRs. ...
written 11 weeks ago by ahmad mousavi410
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What is the best pipeline for analyzing Non-invasive prenatal (NIPT) data?
... Dear all, I want to do analysis on NIPT data, Does anyone know about which software/pipeline is best for **NIPT data analysis**? Tnx ...
genome next-gen alignment written 3 months ago by ahmad mousavi410
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How much data and how many libraries do we need for de-novo assembly?
... Hi Could you please explain how many libraries (with different insert-sizes) and how much data per library we need for having a good coverage for a denovo genome? How could we define it? For example: 1- What is optimal number of above issue for Bacteria (4-7Mb size)? 2- What is optimal number ...
genome assembly next-gen sequencing written 3 months ago by ahmad mousavi410 • updated 3 months ago by Carambakaracho930
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Comment: C: Too many contig after genome assembly with Spades
... No, I don't understant of relationship of fastq file. With smaller kmer I got more contigs. ...
written 4 months ago by ahmad mousavi410
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Comment: C: Too many contig after genome assembly with Spades
... Spades let you to define several kmers and it automatically select one based on data structure. So I have constant no. of contigs. ...
written 4 months ago by ahmad mousavi410
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Answer: A: heat map clustering
... Hi For log2 from count matrix try this : library(pheatmap) library(gplots) pdf(paste(fnh,".pdf",sep="")) pheatmap(log2(exp+1) ,show_rownames = F) pheatmap(log2(exp+1),show_rownames = F, color=greenred(75)) dev.off() you can use followi ...
written 4 months ago by ahmad mousavi410
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Answer: A: TOPGO- how to do GO enrichment using a custom go database?
... Hi Ahmad, You can use [WEGO website][1], its pretty cool, and you could do GO analysis based on GO ID information. The example is like ![enter image description here][2] [1]: http://wego.genomics.org.cn [2]: http://wego.genomics.org.cn/images/native_format.png ...
written 4 months ago by ahmad mousavi410
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Comment: C: Keep special character in a .txt file
... I'm agree with @jej.healey , you should try some coding by yourself, millions of people have tried before you, at least 100K. and those question are too simple and have answers for sure. ...
written 4 months ago by ahmad mousavi410

Latest awards to ahmad mousavi

Appreciated 16 days ago, created a post with more than 5 votes. For Showing up and down regulated GO and pathway using enrichR and ggplot2
Scholar 4 months ago, created an answer that has been accepted. For A: Extract a word from inside the text
Appreciated 4 months ago, created a post with more than 5 votes. For Showing up and down regulated GO and pathway using enrichR and ggplot2
Scholar 4 months ago, created an answer that has been accepted. For A: Extract a word from inside the text
Teacher 4 months ago, created an answer with at least 3 up-votes. For A: How to make k-means clustering plot for relative expression?
Scholar 4 months ago, created an answer that has been accepted. For A: Extract a word from inside the text
Teacher 5 months ago, created an answer with at least 3 up-votes. For A: How to make k-means clustering plot for relative expression?
Popular Question 5 months ago, created a question with more than 1,000 views. For Using gVCF mode in HaplotypeCaller ( GATK4)
Popular Question 6 months ago, created a question with more than 1,000 views. For Easy way to do GO enrichment in R
Popular Question 8 months ago, created a question with more than 1,000 views. For Easy way to do GO enrichment in R

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