User: ahmad mousavi

gravatar for ahmad mousavi
ahmad mousavi450
Reputation:
450
Status:
Trusted
Location:
Royan Institute, Tehran, Iran
Website:
https://www.linkedin.c...
Last seen:
6 months ago
Joined:
3 years, 3 months ago
Email:
a*************@gmail.com

Posts by ahmad mousavi

<prev • 67 results • page 1 of 7 • next >
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Comment: C: How to merge microarray and RNA-SEQ expression data for DEG analysis?
... thanks a lot, Kevin. ...
written 9 months ago by ahmad mousavi450
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How to merge microarray and RNA-SEQ expression data for DEG analysis?
... Dear all, I'm doing a project which I have to use two separate project on GEO, one of them is Agilent array and second is RNA-Seq. I've searched a lot, but there were no straightforward answer to my question. Because both condition samples are not available in a single project I have to use diffe ...
expression microarray rna-seq written 9 months ago by ahmad mousavi450 • updated 9 months ago by Kevin Blighe48k
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Answer: A: Differential expression analysis on miRNA count files
... Hi First use HTSeq-count program on Human miRNA GTF file (in mirbase website) to get a count matrix from bam/sam files. Then you could use DESeq2 or edgeR for DE analysis on miRs. ...
written 9 months ago by ahmad mousavi450
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What is the best pipeline for analyzing Non-invasive prenatal (NIPT) data?
... Dear all, I want to do analysis on NIPT data, Does anyone know about which software/pipeline is best for **NIPT data analysis**? Tnx ...
genome next-gen alignment written 9 months ago by ahmad mousavi450 • updated 6 months ago by hamidah10
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How much data and how many libraries do we need for de-novo assembly?
... Hi Could you please explain how many libraries (with different insert-sizes) and how much data per library we need for having a good coverage for a denovo genome? How could we define it? For example: 1- What is optimal number of above issue for Bacteria (4-7Mb size)? 2- What is optimal number ...
genome assembly next-gen sequencing written 10 months ago by ahmad mousavi450 • updated 10 months ago by Carambakaracho1.6k
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Comment: C: Too many contig after genome assembly with Spades
... No, I don't understant of relationship of fastq file. With smaller kmer I got more contigs. ...
written 10 months ago by ahmad mousavi450
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Comment: C: Too many contig after genome assembly with Spades
... Spades let you to define several kmers and it automatically select one based on data structure. So I have constant no. of contigs. ...
written 10 months ago by ahmad mousavi450
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Answer: A: heat map clustering
... Hi For log2 from count matrix try this : library(pheatmap) library(gplots) pdf(paste(fnh,".pdf",sep="")) pheatmap(log2(exp+1) ,show_rownames = F) pheatmap(log2(exp+1),show_rownames = F, color=greenred(75)) dev.off() you can use followi ...
written 10 months ago by ahmad mousavi450
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Answer: A: TOPGO- how to do GO enrichment using a custom go database?
... Hi Ahmad, You can use [WEGO website][1], its pretty cool, and you could do GO analysis based on GO ID information. The example is like ![enter image description here][2] [1]: http://wego.genomics.org.cn [2]: http://wego.genomics.org.cn/images/native_format.png ...
written 10 months ago by ahmad mousavi450
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Comment: C: Keep special character in a .txt file
... I'm agree with @jej.healey , you should try some coding by yourself, millions of people have tried before you, at least 100K. and those question are too simple and have answers for sure. ...
written 10 months ago by ahmad mousavi450

Latest awards to ahmad mousavi

Appreciated 6 months ago, created a post with more than 5 votes. For Showing up and down regulated GO and pathway using enrichR and ggplot2
Scholar 10 months ago, created an answer that has been accepted. For A: Extract a word from inside the text
Appreciated 10 months ago, created a post with more than 5 votes. For Showing up and down regulated GO and pathway using enrichR and ggplot2
Scholar 10 months ago, created an answer that has been accepted. For A: Extract a word from inside the text
Teacher 10 months ago, created an answer with at least 3 up-votes. For A: How to make k-means clustering plot for relative expression?
Scholar 10 months ago, created an answer that has been accepted. For A: Extract a word from inside the text
Teacher 11 months ago, created an answer with at least 3 up-votes. For A: How to make k-means clustering plot for relative expression?
Popular Question 12 months ago, created a question with more than 1,000 views. For Using gVCF mode in HaplotypeCaller ( GATK4)
Popular Question 12 months ago, created a question with more than 1,000 views. For Easy way to do GO enrichment in R
Popular Question 15 months ago, created a question with more than 1,000 views. For Easy way to do GO enrichment in R

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