User: ahmad mousavi

gravatar for ahmad mousavi
ahmad mousavi200
Reputation:
200
Status:
Trusted
Location:
Royan Institute, Tehran, Iran
Last seen:
4 hours ago
Joined:
2 years, 5 months ago
Email:
a*************@gmail.com

Posts by ahmad mousavi

<prev • 52 results • page 1 of 6 • next >
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Comment: C: Converting Blast output to GFF
... yes, almost they are equal to each other. ...
written 4 hours ago by ahmad mousavi200
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Comment: C: Converting Blast output to GFF
... Thanks, I have searched too, but rarely worked for my purpose, anyway thanks. ...
written 4 hours ago by ahmad mousavi200
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Answer: A: Using HTSeq-count on a SAM file?
... Hi For most of known organism you could use [Ensemble FTP website][1] it includes DNA sequences and GFF/GTF files. Just search your organism. [1]: https://asia.ensembl.org/info/data/ftp/index.html ...
written 4 hours ago by ahmad mousavi200
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Comment: C: Remove lines from a toptable that have an empty ID (symbol)
... yeah that's work too, nice code !! ...
written 1 day ago by ahmad mousavi200
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Answer: A: removing lines from a toptable that have an empty ID (symbol)?
... Hi notEmpty <- subset(tt, tt$ID !="") ...
written 1 day ago by ahmad mousavi200
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Converting Blast output to GFF
... Hi Is there anybody know, how to convert the Blast **-outfmt 6 table** to **GFF file**? I have search for a tool but It I couldn't find anything. Tnx ...
genome assembly blast written 1 day ago by ahmad mousavi200 • updated 21 hours ago by h.mon21k
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Answer: A: Extract a word from inside the text
... Hi use these code: # suppose df is your table df <- gsub("*.gene=","",df) df <- gsub("[*].*,"",df) or make delimiter based on ** chars. ...
written 1 day ago by ahmad mousavi200
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Comment: C: What would be the trend in next few years in NGS era?
... Great, so we will new type programming in aligners. ...
written 2 days ago by ahmad mousavi200
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Comment: C: What would be the trend in next few years in NGS era?
... Thanks, Jean. despite the good protocol for gathering the sequences information we face with bad standard in gathering clinical information. In different project they use different clinical information. Some projects like TCGA tried to gather as complete as they could but most of other not. I think ...
written 2 days ago by ahmad mousavi200
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11 follow
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Forum: What would be the trend in next few years in NGS era?
... Dear friends, Despite the past few years we saw more and more data have been generated, and now days it is general to use genetic tests for patients., also lots of companies started working on these type of data even companies like google. I wanted to ask this question in order to share informati ...
bioinformatics ngs forum sequencing written 3 days ago by ahmad mousavi200

Latest awards to ahmad mousavi

Appreciated 21 hours ago, created a post with more than 5 votes. For Showing up and down regulated GO and pathway using enrichR and ggplot2
Scholar 1 day ago, created an answer that has been accepted. For A: Extract a word from inside the text
Teacher 1 day ago, created an answer with at least 3 up-votes. For A: How to make k-means clustering plot for relative expression?
Scholar 1 day ago, created an answer that has been accepted. For A: Extract a word from inside the text
Teacher 5 weeks ago, created an answer with at least 3 up-votes. For A: How to make k-means clustering plot for relative expression?
Popular Question 8 weeks ago, created a question with more than 1,000 views. For Using gVCF mode in HaplotypeCaller ( GATK4)
Popular Question 9 weeks ago, created a question with more than 1,000 views. For Easy way to do GO enrichment in R
Popular Question 4 months ago, created a question with more than 1,000 views. For Easy way to do GO enrichment in R

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