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Comment: Comment: How to find genes with altered CNV from CNVkit output?
21 days ago by ahmad mousavi ▴ 800
0
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1
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319
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Comment: Comment: How to find genes with altered CNV from CNVkit output?
25 days ago by ahmad mousavi ▴ 800
2
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4
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319
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How to find genes with altered CNV from CNVkit output?
wes cnv wgs ngs
21 days ago by ahmad mousavi ▴ 800
2
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1
reply
505
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Answer: Answer: How to find what is the most significantly modulated gene in GEO2R analysis?
5 months ago by ahmad mousavi ▴ 800
2
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2
replies
565
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Need a spatial transcriptomics cancer data
NGS scRNA-Seq Single-Cell
updated 5 months ago by ★ 1.8k • written 5 months ago by ▴ 800
0
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1
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556
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Comment: Comment: average of one column for each category of another column
5 months ago by ahmad mousavi ▴ 800
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1
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1.0k
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Comment: Comment: What are the steps for Germline and Somatic CNV detection using CNVkit?
5 months ago by ahmad mousavi ▴ 800
0
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1
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745
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Answer: Answer: RNAseq analysis: how to add new gene into an existing worm based reference
6 months ago by ahmad mousavi ▴ 800
9
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2
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616
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Batch effect correction between Bulk RNA-Seq and scRNA-Seq's clusters
rna-seq scrna-seq deg deseq2
updated 8 months ago by 4.3k • written 8 months ago by ▴ 800
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0
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1.0k
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Answer: Answer: STAR ALIGNMENT
8 months ago by ahmad mousavi ▴ 800
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0
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1.0k
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Comment: Comment: What are the steps for Germline and Somatic CNV detection using CNVkit?
8 months ago by ahmad mousavi ▴ 800
0
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1
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1.0k
views
Comment: Comment: What are the steps for Germline and Somatic CNV detection using CNVkit?
8 months ago by ahmad mousavi ▴ 800
2
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6
replies
1.0k
views
What are the steps for Germline and Somatic CNV detection using CNVkit?
cnv cnvkit
updated 5 months ago by 44k • written 8 months ago by ▴ 800
0
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0
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3.1k
views
Answer: Answer: Can we compare bulk RNAseq samples and single cell rnaseq clusters?
12 months ago by ahmad mousavi ▴ 800
0
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0
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539
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Comment: Comment: Estimating sample size from bulk RNAseq data
12 months ago by ahmad mousavi ▴ 800
0
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1
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550
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How to add annotation columns with specific colors to the heatmap?
R heatmap RNA-seq
updated 13 months ago by 44k • written 13 months ago by ▴ 800
0
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1
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1.3k
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Answer: Answer: Variant identified, What next?
23 months ago by ahmad mousavi ▴ 800
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0
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507
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Comment: Comment: Carp mitochondrial genome
23 months ago by ahmad mousavi ▴ 800
1
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0
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848
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Answer: Answer: BEDtools merge output
23 months ago by ahmad mousavi ▴ 800
0
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0
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626
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Answer: Answer: Does it make sense to analyze snRNA-seq data with low nUMI per gene?
23 months ago by ahmad mousavi ▴ 800
1
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0
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2.5k
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Answer: Answer: scRNA-seq: Which is the best method for computing the % of similarity between tw
23 months ago by ahmad mousavi ▴ 800
1
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1
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2.8k
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Answer: Answer: Fold change cutoff for downregulated genes
2.0 years ago by ahmad mousavi ▴ 800
1
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0
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1.8k
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Answer: Answer: Skills for industry career in bioinformatics
2.0 years ago by ahmad mousavi ▴ 800
0
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1
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925
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Answer: Answer: Expected runtimes for GATK variant calling?
2.0 years ago by ahmad mousavi ▴ 800
2
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0
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1.1k
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Answer: Answer: Bulk RNA-seq with genome but without gene annotation
2.1 years ago by ahmad mousavi ▴ 800
3
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0
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570
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Answer: Answer: Using gtf file to get gene positions
2.1 years ago by ahmad mousavi ▴ 800
0
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1
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62k
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Answer: Answer: What Are The Most Common Stupid Mistakes In Bioinformatics?
2.1 years ago by ahmad mousavi ▴ 800
1
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1
reply
567
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Barcode whitelist in seurat
scRNA ngs scRNA-seq
updated 2.1 years ago by 21k • written 2.1 years ago by ▴ 800
0
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0
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817
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Comment: Comment: How to demultiplex single cell rna-seq based on SNP mutation?
2.1 years ago by ahmad mousavi ▴ 800
1
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0
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1.2k
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Answer: Answer: What's the best 3rd party software for doing analysis on 10X Genomics ATAC-seq d
2.2 years ago by ahmad mousavi ▴ 800
0
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1
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1.6k
views
Comment: Comment: I don't understand the HDF5 file from 10x genomics scRNAseq
2.2 years ago by ahmad mousavi ▴ 800
0
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2
replies
817
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How to demultiplex single cell rna-seq based on SNP mutation?
NGS RNA-SEQ singlecell scRNA-seq
2.1 years ago by ahmad mousavi ▴ 800
16
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5
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13k
views
6 follow
Tutorial: Easy way to do GO enrichment in R
enrichr RNA-Seq gene R
updated 16 months ago by 44k • written 6.7 years ago by ▴ 800
4
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3
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5.9k
views
How to compare two Seurat object (sample) in order to find top markers?
scRNA-SEQ NGS rna-seq
updated 2.6 years ago by ▴ 100 • written 2.8 years ago by ▴ 800
0
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0
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1.1k
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Comment: Comment: Finding cluster specific markers in the Seurat object
2.7 years ago by ahmad mousavi ▴ 800
0
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2
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1.1k
views
Finding cluster specific markers in the Seurat object
sequencing seurat scRNA scRNA-SEQ
2.7 years ago by ahmad mousavi ▴ 800
0
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1
reply
7.0k
views
Comment: Comment: Which trajectory method is better !?
2.8 years ago by ahmad mousavi ▴ 800
6
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4
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7.0k
views
Which trajectory method is better !?
cell monocle3 monocle scRNA-SEQ single RNA-SEQ
2.8 years ago by ahmad mousavi ▴ 800
0
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0
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626
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How to merge Bulk ATAC-SEQ with scATAC-SEQ result?
atac scATAC
2.9 years ago by ahmad mousavi ▴ 800
0
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0
replies
1.1k
views
Remove cells from Seurat object based on gene expression of makers
rnaseq singlecell seurat scrna
3.2 years ago by ahmad mousavi ▴ 800
0
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2
replies
2.2k
views
Comment: Comment: How can I use log2 RPM data(RNA-seq) to find differentially expressed genes?
3.2 years ago by ahmad mousavi ▴ 800
1
vote
1
reply
907
views
Rare cell population in single cell ATAC-Seq
atac-seq atac
updated 3.3 years ago by ▴ 110 • written 3.3 years ago by ▴ 800
0
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0
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1.3k
views
No peaks found in Signac's FindMarker
seurat atac-seq Signac atac singlecell
3.3 years ago by ahmad mousavi ▴ 800
0
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0
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886
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Answer: A: SNP index definition
3.6 years ago by ahmad mousavi ▴ 800
0
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3
replies
3.1k
views
How to handle DNA methylation duplication in Bismark?
sequencing alignment
updated 3.9 years ago by 20 • written 6.6 years ago by ▴ 800
1
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5
replies
2.2k
views
How to make annotation (GFF/GTF) for transcriptome?
RNA-Seq Assembly sequencing alignment
updated 4.2 years ago by 8.6k • written 4.2 years ago by ▴ 800
0
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0
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1.9k
views
Comment: C: Bacterial RNAseq - Help for beginner
4.3 years ago by ahmad mousavi ▴ 800
0
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2
replies
1.9k
views
Answer: A: Bacterial RNAseq - Help for beginner
4.3 years ago by ahmad mousavi ▴ 800
0
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1
reply
518
views
How to make comparison between human and mouse pathways for a gene list?
RNA-Seq
4.3 years ago by ahmad mousavi ▴ 800
20
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7
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6.5k
views
Tutorial: Showing up and down regulated GO and pathway using enrichR and ggplot2
ggplot2 RNA-Seq R
updated 16 months ago by 44k • written 5.8 years ago by ▴ 800
116 results • Page 1 of 3
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