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comments
2
votes
1
reply
355
views
Answer:
Answer: How to find what is the most significantly modulated gene in GEO2R analysis?
8 weeks ago by
ahmad mousavi
▴ 800
2
votes
2
replies
377
views
Need a spatial transcriptomics cancer data
NGS
scRNA-Seq
Single-Cell
updated 10 weeks ago by
jv
★ 1.8k • written 10 weeks ago by
ahmad mousavi
▴ 800
0
votes
1
reply
432
views
Comment:
Comment: average of one column for each category of another column
10 weeks ago by
ahmad mousavi
▴ 800
0
votes
1
reply
837
views
Comment:
Comment: What are the steps for Germline and Somatic CNV detection using CNVkit?
11 weeks ago by
ahmad mousavi
▴ 800
0
votes
1
reply
589
views
Answer:
Answer: RNAseq analysis: how to add new gene into an existing worm based reference
12 weeks ago by
ahmad mousavi
▴ 800
9
votes
2
replies
501
views
Batch effect correction between Bulk RNA-Seq and scRNA-Seq's clusters
rna-seq
scrna-seq
deg
deseq2
updated 5 months ago by
LauferVA
4.2k • written 5 months ago by
ahmad mousavi
▴ 800
0
votes
0
replies
792
views
Answer:
Answer: STAR ALIGNMENT
5 months ago by
ahmad mousavi
▴ 800
0
votes
0
replies
837
views
Comment:
Comment: What are the steps for Germline and Somatic CNV detection using CNVkit?
5 months ago by
ahmad mousavi
▴ 800
0
votes
1
reply
837
views
Comment:
Comment: What are the steps for Germline and Somatic CNV detection using CNVkit?
5 months ago by
ahmad mousavi
▴ 800
2
votes
6
replies
837
views
What are the steps for Germline and Somatic CNV detection using CNVkit?
cnv
cnvkit
updated 11 weeks ago by
Ram
43k • written 5 months ago by
ahmad mousavi
▴ 800
0
votes
0
replies
2.9k
views
Answer:
Answer: Can we compare bulk RNAseq samples and single cell rnaseq clusters?
9 months ago by
ahmad mousavi
▴ 800
0
votes
0
replies
470
views
Comment:
Comment: Estimating sample size from bulk RNAseq data
9 months ago by
ahmad mousavi
▴ 800
0
votes
1
reply
473
views
How to add annotation columns with specific colors to the heatmap?
R
heatmap
RNA-seq
updated 10 months ago by
Ram
43k • written 10 months ago by
ahmad mousavi
▴ 800
0
votes
1
reply
1.2k
views
Answer:
Answer: Variant identified, What next?
20 months ago by
ahmad mousavi
▴ 800
0
votes
0
replies
462
views
Comment:
Comment: Carp mitochondrial genome
20 months ago by
ahmad mousavi
▴ 800
1
vote
0
replies
723
views
Answer:
Answer: BEDtools merge output
20 months ago by
ahmad mousavi
▴ 800
0
votes
0
replies
541
views
Answer:
Answer: Does it make sense to analyze snRNA-seq data with low nUMI per gene?
20 months ago by
ahmad mousavi
▴ 800
1
vote
0
replies
2.2k
views
Answer:
Answer: scRNA-seq: Which is the best method for computing the % of similarity between tw
20 months ago by
ahmad mousavi
▴ 800
1
vote
1
reply
2.3k
views
Answer:
Answer: Fold change cutoff for downregulated genes
21 months ago by
ahmad mousavi
▴ 800
1
vote
0
replies
1.6k
views
Answer:
Answer: Skills for industry career in bioinformatics
21 months ago by
ahmad mousavi
▴ 800
0
votes
1
reply
714
views
Answer:
Answer: Expected runtimes for GATK variant calling?
21 months ago by
ahmad mousavi
▴ 800
2
votes
0
replies
924
views
Answer:
Answer: Bulk RNA-seq with genome but without gene annotation
22 months ago by
ahmad mousavi
▴ 800
3
votes
0
replies
491
views
Answer:
Answer: Using gtf file to get gene positions
22 months ago by
ahmad mousavi
▴ 800
0
votes
1
reply
59k
views
Answer:
Answer: What Are The Most Common Stupid Mistakes In Bioinformatics?
22 months ago by
ahmad mousavi
▴ 800
1
vote
1
reply
476
views
Barcode whitelist in seurat
scRNA
ngs
scRNA-seq
updated 22 months ago by
cpad0112
21k • written 22 months ago by
ahmad mousavi
▴ 800
0
votes
0
replies
734
views
Comment:
Comment: How to demultiplex single cell rna-seq based on SNP mutation?
22 months ago by
ahmad mousavi
▴ 800
1
vote
0
replies
1.2k
views
Answer:
Answer: What's the best 3rd party software for doing analysis on 10X Genomics ATAC-seq d
22 months ago by
ahmad mousavi
▴ 800
0
votes
1
reply
1.2k
views
Comment:
Comment: I don't understand the HDF5 file from 10x genomics scRNAseq
22 months ago by
ahmad mousavi
▴ 800
0
votes
2
replies
734
views
How to demultiplex single cell rna-seq based on SNP mutation?
NGS
RNA-SEQ
singlecell
scRNA-seq
22 months ago by
ahmad mousavi
▴ 800
16
votes
5
replies
13k
views
6 follow
Tutorial:
Easy way to do GO enrichment in R
enrichr
RNA-Seq
gene
R
updated 13 months ago by
Ram
43k • written 6.4 years ago by
ahmad mousavi
▴ 800
4
votes
3
replies
5.3k
views
How to compare two Seurat object (sample) in order to find top markers?
scRNA-SEQ
NGS
rna-seq
updated 2.3 years ago by
Ondina
▴ 100 • written 2.5 years ago by
ahmad mousavi
▴ 800
0
votes
0
replies
1.0k
views
Comment:
Comment: Finding cluster specific markers in the Seurat object
2.5 years ago by
ahmad mousavi
▴ 800
0
votes
2
replies
1.0k
views
Finding cluster specific markers in the Seurat object
sequencing
seurat
scRNA
scRNA-SEQ
2.5 years ago by
ahmad mousavi
▴ 800
0
votes
1
reply
6.1k
views
Comment:
Comment: Which trajectory method is better !?
2.5 years ago by
ahmad mousavi
▴ 800
5
votes
4
replies
6.1k
views
Which trajectory method is better !?
cell
monocle3
monocle
scRNA-SEQ
single
RNA-SEQ
2.5 years ago by
ahmad mousavi
▴ 800
0
votes
0
replies
583
views
How to merge Bulk ATAC-SEQ with scATAC-SEQ result?
atac
scATAC
2.6 years ago by
ahmad mousavi
▴ 800
0
votes
0
replies
1.0k
views
Remove cells from Seurat object based on gene expression of makers
rnaseq
singlecell
seurat
scrna
2.9 years ago by
ahmad mousavi
▴ 800
0
votes
2
replies
2.0k
views
Comment:
Comment: How can I use log2 RPM data(RNA-seq) to find differentially expressed genes?
2.9 years ago by
ahmad mousavi
▴ 800
1
vote
1
reply
853
views
Rare cell population in single cell ATAC-Seq
atac-seq
atac
updated 3.0 years ago by
heskett
▴ 110 • written 3.0 years ago by
ahmad mousavi
▴ 800
0
votes
0
replies
1.2k
views
No peaks found in Signac's FindMarker
seurat
atac-seq
Signac
atac
singlecell
3.0 years ago by
ahmad mousavi
▴ 800
0
votes
0
replies
807
views
Answer:
A: SNP index definition
3.3 years ago by
ahmad mousavi
▴ 800
0
votes
3
replies
2.9k
views
How to handle DNA methylation duplication in Bismark?
sequencing
alignment
updated 3.6 years ago by
Biostar
20 • written 6.3 years ago by
ahmad mousavi
▴ 800
1
vote
5
replies
2.0k
views
How to make annotation (GFF/GTF) for transcriptome?
RNA-Seq
Assembly
sequencing
alignment
updated 3.9 years ago by
Juke34
8.5k • written 3.9 years ago by
ahmad mousavi
▴ 800
0
votes
0
replies
1.6k
views
Comment:
C: Bacterial RNAseq - Help for beginner
4.0 years ago by
ahmad mousavi
▴ 800
0
votes
2
replies
1.6k
views
Answer:
A: Bacterial RNAseq - Help for beginner
4.0 years ago by
ahmad mousavi
▴ 800
0
votes
1
reply
477
views
How to make comparison between human and mouse pathways for a gene list?
RNA-Seq
4.0 years ago by
ahmad mousavi
▴ 800
20
votes
7
replies
6.3k
views
Tutorial:
Showing up and down regulated GO and pathway using enrichR and ggplot2
ggplot2
RNA-Seq
R
updated 13 months ago by
Ram
43k • written 5.5 years ago by
ahmad mousavi
▴ 800
0
votes
0
replies
12k
views
Comment:
C: How to make k-means clustering plot for relative expression?
4.0 years ago by
ahmad mousavi
▴ 800
0
votes
0
replies
3.3k
views
Comment:
C: How to make GFF file based on assembled transcriptome and genome sequence?
4.1 years ago by
ahmad mousavi
▴ 800
0
votes
1
reply
3.3k
views
Comment:
C: How to make GFF file based on assembled transcriptome and genome sequence?
4.1 years ago by
ahmad mousavi
▴ 800
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