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Comment: Comment: How to find genes with altered CNV from CNVkit output?
10 weeks ago by ahmad mousavi ▴ 800
0
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423
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Comment: Comment: How to find genes with altered CNV from CNVkit output?
10 weeks ago by ahmad mousavi ▴ 800
3
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4
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423
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How to find genes with altered CNV from CNVkit output?
wes cnv wgs ngs
10 weeks ago by ahmad mousavi ▴ 800
2
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1
reply
589
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Answer: Answer: How to find what is the most significantly modulated gene in GEO2R analysis?
6 months ago by ahmad mousavi ▴ 800
2
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2
replies
604
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Need a spatial transcriptomics cancer data
NGS scRNA-Seq Single-Cell
updated 7 months ago by ★ 1.8k • written 7 months ago by ▴ 800
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1
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606
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Comment: Comment: average of one column for each category of another column
7 months ago by ahmad mousavi ▴ 800
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1
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1.1k
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Comment: Comment: What are the steps for Germline and Somatic CNV detection using CNVkit?
7 months ago by ahmad mousavi ▴ 800
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1
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844
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Answer: Answer: RNAseq analysis: how to add new gene into an existing worm based reference
7 months ago by ahmad mousavi ▴ 800
9
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2
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664
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Batch effect correction between Bulk RNA-Seq and scRNA-Seq's clusters
rna-seq scrna-seq deg deseq2
updated 10 months ago by 4.4k • written 10 months ago by ▴ 800
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0
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1.1k
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Answer: Answer: STAR ALIGNMENT
10 months ago by ahmad mousavi ▴ 800
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0
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1.1k
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Comment: Comment: What are the steps for Germline and Somatic CNV detection using CNVkit?
10 months ago by ahmad mousavi ▴ 800
0
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1
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1.1k
views
Comment: Comment: What are the steps for Germline and Somatic CNV detection using CNVkit?
10 months ago by ahmad mousavi ▴ 800
2
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6
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1.1k
views
What are the steps for Germline and Somatic CNV detection using CNVkit?
cnv cnvkit
updated 7 months ago by 44k • written 10 months ago by ▴ 800
0
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0
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3.1k
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Answer: Answer: Can we compare bulk RNAseq samples and single cell rnaseq clusters?
14 months ago by ahmad mousavi ▴ 800
0
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0
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587
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Comment: Comment: Estimating sample size from bulk RNAseq data
14 months ago by ahmad mousavi ▴ 800
0
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1
reply
588
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How to add annotation columns with specific colors to the heatmap?
R heatmap RNA-seq
updated 15 months ago by 44k • written 15 months ago by ▴ 800
0
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1
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1.4k
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Answer: Answer: Variant identified, What next?
2.1 years ago by ahmad mousavi ▴ 800
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0
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528
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Comment: Comment: Carp mitochondrial genome
2.1 years ago by ahmad mousavi ▴ 800
1
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0
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899
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Answer: Answer: BEDtools merge output
2.1 years ago by ahmad mousavi ▴ 800
0
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0
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656
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Answer: Answer: Does it make sense to analyze snRNA-seq data with low nUMI per gene?
2.1 years ago by ahmad mousavi ▴ 800
1
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0
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2.6k
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Answer: Answer: scRNA-seq: Which is the best method for computing the % of similarity between tw
2.1 years ago by ahmad mousavi ▴ 800
1
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1
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3.1k
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Answer: Answer: Fold change cutoff for downregulated genes
2.2 years ago by ahmad mousavi ▴ 800
1
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0
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1.9k
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Answer: Answer: Skills for industry career in bioinformatics
2.2 years ago by ahmad mousavi ▴ 800
0
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1
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1.1k
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Answer: Answer: Expected runtimes for GATK variant calling?
2.2 years ago by ahmad mousavi ▴ 800
2
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0
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1.1k
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Answer: Answer: Bulk RNA-seq with genome but without gene annotation
2.2 years ago by ahmad mousavi ▴ 800
3
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0
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602
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Answer: Answer: Using gtf file to get gene positions
2.2 years ago by ahmad mousavi ▴ 800
0
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1
reply
64k
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Answer: Answer: What Are The Most Common Stupid Mistakes In Bioinformatics?
2.3 years ago by ahmad mousavi ▴ 800
1
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1
reply
617
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Barcode whitelist in seurat
scRNA ngs scRNA-seq
updated 2.3 years ago by 21k • written 2.3 years ago by ▴ 800
0
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0
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863
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Comment: Comment: How to demultiplex single cell rna-seq based on SNP mutation?
2.3 years ago by ahmad mousavi ▴ 800
1
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0
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1.3k
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Answer: Answer: What's the best 3rd party software for doing analysis on 10X Genomics ATAC-seq d
2.3 years ago by ahmad mousavi ▴ 800
0
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1
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1.7k
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Comment: Comment: I don't understand the HDF5 file from 10x genomics scRNAseq
2.3 years ago by ahmad mousavi ▴ 800
0
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2
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863
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How to demultiplex single cell rna-seq based on SNP mutation?
NGS RNA-SEQ singlecell scRNA-seq
2.3 years ago by ahmad mousavi ▴ 800
16
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5
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13k
views
6 follow
Tutorial: Easy way to do GO enrichment in R
enrichr RNA-Seq gene R
updated 18 months ago by 44k • written 6.8 years ago by ▴ 800
4
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3
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6.1k
views
How to compare two Seurat object (sample) in order to find top markers?
scRNA-SEQ NGS rna-seq
updated 2.8 years ago by ▴ 100 • written 2.9 years ago by ▴ 800
0
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0
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1.2k
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Comment: Comment: Finding cluster specific markers in the Seurat object
2.9 years ago by ahmad mousavi ▴ 800
0
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2
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1.2k
views
Finding cluster specific markers in the Seurat object
sequencing seurat scRNA scRNA-SEQ
2.9 years ago by ahmad mousavi ▴ 800
0
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1
reply
7.3k
views
Comment: Comment: Which trajectory method is better !?
3.0 years ago by ahmad mousavi ▴ 800
6
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4
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7.3k
views
Which trajectory method is better !?
cell monocle3 monocle scRNA-SEQ single RNA-SEQ
3.0 years ago by ahmad mousavi ▴ 800
0
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0
replies
655
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How to merge Bulk ATAC-SEQ with scATAC-SEQ result?
atac scATAC
3.0 years ago by ahmad mousavi ▴ 800
0
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0
replies
1.2k
views
Remove cells from Seurat object based on gene expression of makers
rnaseq singlecell seurat scrna
3.3 years ago by ahmad mousavi ▴ 800
0
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2
replies
2.3k
views
Comment: Comment: How can I use log2 RPM data(RNA-seq) to find differentially expressed genes?
3.3 years ago by ahmad mousavi ▴ 800
1
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1
reply
939
views
Rare cell population in single cell ATAC-Seq
atac-seq atac
updated 3.4 years ago by ▴ 110 • written 3.4 years ago by ▴ 800
0
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0
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1.3k
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No peaks found in Signac's FindMarker
seurat atac-seq Signac atac singlecell
3.4 years ago by ahmad mousavi ▴ 800
0
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0
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926
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Answer: A: SNP index definition
3.8 years ago by ahmad mousavi ▴ 800
0
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3
replies
3.1k
views
How to handle DNA methylation duplication in Bismark?
sequencing alignment
updated 4.0 years ago by 20 • written 6.7 years ago by ▴ 800
1
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5
replies
2.3k
views
How to make annotation (GFF/GTF) for transcriptome?
RNA-Seq Assembly sequencing alignment
updated 4.3 years ago by 8.7k • written 4.3 years ago by ▴ 800
0
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0
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2.0k
views
Comment: C: Bacterial RNAseq - Help for beginner
4.4 years ago by ahmad mousavi ▴ 800
0
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2
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2.0k
views
Answer: A: Bacterial RNAseq - Help for beginner
4.4 years ago by ahmad mousavi ▴ 800
0
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1
reply
543
views
How to make comparison between human and mouse pathways for a gene list?
RNA-Seq
4.4 years ago by ahmad mousavi ▴ 800
20
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7
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6.6k
views
Tutorial: Showing up and down regulated GO and pathway using enrichR and ggplot2
ggplot2 RNA-Seq R
updated 18 months ago by 44k • written 5.9 years ago by ▴ 800
116 results • Page 1 of 3
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