User: X.Y.Zebby

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X.Y.Zebby0
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Posts by X.Y.Zebby

<prev • 6 results • page 1 of 1 • next >
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Error: Merging ped and map files by PLINK
... Hello I have two populations (ped and map files) that I want to merge in a file. I used PLINK software to reach my aim. But I faced an error in my work. I used "--allow-no-sex" or "--must-have-sex" in my code, but I cannot run again. My friend can run the below code without any error. We used the ...
merge plink snp written 6 days ago by X.Y.Zebby0
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How can calculate the column of SNP in SNAPPY option (Wombat software)?
... Hi friends, I have to create a file that I put the contents below according to its manual. 104 3 21 321 2.0 15.0 237.6668 105 3 20 320 3.0 14.0 261.7078 108 3 21 321 2.0 15.0 236.7068 109 2 21 221 2.0 15.0 215.2132 113 ...
chip-seq snp written 28 days ago by X.Y.Zebby0 • updated 13 days ago by Biostar ♦♦ 20
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Comment: A: Can we draw PCA with genotyping data align with geographic data for two differen
... Hello Kevin, Thank you for your prompt reply and sorry for my answer to you late. I saw a nearly related paper about my question but in GWAS, not PCA. In this paper, they represented Gene-by-environment interactions as d parameters in GWAS model. But why researchers don't consider it on their PCA? ...
written 8 months ago by X.Y.Zebby0
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Can we draw PCA with genotyping data align with geographic data for two different populations in different locations?
... The analysis of population structure has many methods that one of them is PCA in population genetic research. You know, "genotype-environment correlation" is really important. For example, we are two populations (breed) in two different locations with their genotyping and geographic data (e.g. ele ...
genome chip-seq snp written 8 months ago by X.Y.Zebby0
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Answer: A: Watterson's estimator "theta"
... Hi I will be very grateful if you are so kind to answer me about question from the population differentiation method. What can be interpreted from a negative Theta value (-1) when measuring pairwise Theta value (Fst) between 2 populations? ...
written 4.4 years ago by X.Y.Zebby0
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How can I get the sheep chromosomes centromere position and chromosomes length???
... I face to one problem that I can not resolve it. I have a problem for drawing idiogram in sheep chromosomes because I must have sheep centromeres position and chr size in this graph but I can't find information about it. The table below is a sample from human genome. ID size centrom ...
genome written 4.6 years ago by X.Y.Zebby0 • updated 8 months ago by Alex Reynolds31k

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Popular Question 4.2 years ago, created a question with more than 1,000 views. For How can I get the sheep chromosomes centromere position and Chromosomes length???

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