User: boymin2020

gravatar for boymin2020
boymin202010
Reputation:
10
Status:
New User
Location:
Last seen:
5 days, 9 hours ago
Joined:
2 years, 3 months ago
Email:
b*********@gmail.com

Posts by boymin2020

<prev • 28 results • page 1 of 3 • next >
0
votes
1
answer
213
views
1
answers
Comment: C: Question about the reliability of --check-sex in PLINK2
... Thank you very much. ...
written 7 weeks ago by boymin202010
0
votes
1
answer
213
views
1
answers
Comment: C: Question about the reliability of --check-sex in PLINK2
... 1. Use --freq to get the MAF report, then extract variants (>0.01) with rs outside of PAR? ...
written 7 weeks ago by boymin202010
0
votes
1
answer
213
views
1
answers
Comment: C: Question about the reliability of --check-sex in PLINK2
... Thanks for your reply. Another two questions. 1. How the select the specific set of SNPs? 2. What is the meaning of PAR? ...
written 7 weeks ago by boymin202010 • updated 7 weeks ago by RamRS18k
2
votes
1
answer
213
views
1
answer
Question about the reliability of --check-sex in PLINK2
... Hi all, I have tried to use plink2 to check the gender situation of my several datasets. It always shows more problem samples than expected. For some datasets, I also have RNAseq data. Then I checked again with some genes just on chromosome X or Y. It turned out a few problem samples. Therefore, I ...
plink2 sex-check written 7 weeks ago by boymin202010 • updated 7 weeks ago by chrchang5233.9k
0
votes
1
answer
190
views
1
answers
Comment: C: Chromosome lost after merge with vcf-merge
... Yes. Thanks for the follow-up. ...
written 8 weeks ago by boymin202010
0
votes
1
answer
190
views
1
answers
Comment: C: Chromosome lost after merge with vcf-merge
... Thanks for your advice. **bcftools merge** works much faster and very well. ...
written 8 weeks ago by boymin202010
1
vote
1
answer
190
views
1
answer
Chromosome lost after merge with vcf-merge
... Hi all, I have merged a number of WGS VCF files generated from the standard GATK pipeline with vcf-merge function of VCFtools. The merged big VCF file shows that the chromosomes after 19 (e.g., Chrom20) lost. I guess one/some individual VCF files do(es) not have the lost chroms. Are there any possi ...
vcf-merge written 8 weeks ago by boymin202010
0
votes
1
answer
191
views
1
answer
DE heatmap before or after limma adjustment
... Hi, I have a proteomics data from MaxQuant software. According to the manual, the data has been normalized by the MaxQuant internal method. After cleanup, QC and imputation (**imputation data**), I have done the adjustment with limma for AOD, Sex and PMI (**residual data**). In the next step, I wa ...
de heapmap limma written 3 months ago by boymin202010 • updated 8 weeks ago by Devon Ryan85k
0
votes
1
answer
124
views
1
answers
Comment: C: MaxQuant LFQ data cleanup
... Thanks for your so fast answer. Moreover, could you tell me the meanings of "MS/MS count" and "reverse" columns in the output of MaxQuant? ...
written 3 months ago by boymin202010
1
vote
1
answer
124
views
1
answer
MaxQuant LFQ data cleanup
... Hi all, I am new to the proteomics data. A little confused about the LFQ data from MaxQuant software. Take some rows as examples **tr|A0A087X106|A0A087X106_HUMAN;sp|O43790|KRT86_HUMAN;CON__O43790;sp|Q14533|KRT81_HUMAN;CON__Q14533** , what is the meaning of "tr" and "sp"? In addition, I have been r ...
maxquant written 3 months ago by boymin202010 • updated 3 months ago by Devon Ryan85k

Latest awards to boymin2020

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1222 users visited in the last hour