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2
votes
7
replies
6.3k
views
6 follow
Memory usage of picard Samsort
Picard SortSam
updated 17 months ago by 89k • written 8.6 years ago by ▴ 80
2
votes
1
reply
1.4k
views
How to combine the outputs of repeat annotation softwares
RepeatProteinMasker TRF RepeatMasker RepeatModeler
updated 2.5 years ago by • 0 • written 4.3 years ago by ▴ 80
2
votes
5
replies
2.8k
views
convention from vcf to plink
plink
updated 3.6 years ago by ▴ 20 • written 6.3 years ago by ▴ 80
0
votes
0
replies
617
views
how to extract the phase 1 sites of codon aligned derived from PAL2NAL
codon PAL2NAL
updated 2.8 years ago by 45k • written 3.8 years ago by ▴ 80
1
vote
0
replies
796
views
Issues when running r8s for an ultrametric tree
tree orthofinder r8s ultrametric
3.8 years ago by boymin2020 ▴ 80
0
votes
1
reply
1.1k
views
Query about Expansion/Contraction number of the gene families in CAFE
r8s RAxML CAFE
updated 3.8 years ago by ▴ 100 • written 3.8 years ago by ▴ 80
4
votes
13
replies
5.6k
views
6 follow
large number of contigs after assembly
Nanopore genome assembly wtdbg2 sequencing
updated 4.0 years ago by 7.9k • written 4.1 years ago by ▴ 80
0
votes
1
reply
5.6k
views
Comment: Comment: large number of contigs after assembly
4.0 years ago by boymin2020 ▴ 80
0
votes
1
reply
5.6k
views
Comment: Comment: large number of contigs after assembly
4.0 years ago by boymin2020 ▴ 80
0
votes
0
replies
5.6k
views
Comment: Comment: large number of contigs after assembly
4.0 years ago by boymin2020 ▴ 80
0
votes
1
reply
5.6k
views
Comment: Comment: large number of contigs after assembly
4.0 years ago by boymin2020 ▴ 80
0
votes
1
reply
5.6k
views
Comment: Comment: large number of contigs after assembly
4.1 years ago by boymin2020 ▴ 80
0
votes
0
replies
1.3k
views
Comment: Comment: About runing Pilon on individual chromosomes when polish draft genome assembly
4.1 years ago by boymin2020 ▴ 80
1
vote
3
replies
1.3k
views
About runing Pilon on individual chromosomes when polish draft genome assembly
Pilon chromosome polish genome draft
updated 16 months ago by ▴ 190 • written 4.1 years ago by ▴ 80
0
votes
0
replies
4.4k
views
Comment: Comment: Issue about "Augustus did not recognize any genes"
4.5 years ago by boymin2020 ▴ 80
0
votes
2
replies
4.4k
views
Comment: Comment: Issue about "Augustus did not recognize any genes"
4.5 years ago by boymin2020 ▴ 80
1
vote
5
replies
4.4k
views
Issue about "Augustus did not recognize any genes"
Augustus BUSCO
4.5 years ago by boymin2020 ▴ 80
0
votes
0
replies
1.4k
views
Comment: C: preprocess of the nanopore seqeucning data
4.5 years ago by boymin2020 ▴ 80
0
votes
0
replies
2.4k
views
Answer: A: ERROR UTR only implemented with shadow and partial or complete. Augustus
4.5 years ago by boymin2020 ▴ 80
1
vote
2
replies
1.4k
views
preprocess of the nanopore seqeucning data
nanopore cat fastq
updated 4.5 years ago by 48k • written 4.5 years ago by ▴ 80
0
votes
0
replies
1.0k
views
Invalid reference index -1 error in Pilon
pilon wtdbg2 long-read assembly
4.8 years ago by boymin2020 ▴ 80
0
votes
1
reply
1.2k
views
Comment: C: softwares for gene prediction on assembly of nanopore sequencing reads
4.9 years ago by boymin2020 ▴ 80
2
votes
3
replies
1.2k
views
softwares for gene prediction on assembly of nanopore sequencing reads
nanopore gene prediction
updated 4.9 years ago by 15k • written 4.9 years ago by ▴ 80
0
votes
0
replies
2.1k
views
Comment: C: Questions about the Getting-started of wtdbg2
4.9 years ago by boymin2020 ▴ 80
1
vote
3
replies
2.1k
views
Questions about the Getting-started of wtdbg2
wtdbg2 nanopore Illumina
updated 4.9 years ago by 35k • written 4.9 years ago by ▴ 80
1
vote
2
replies
1.2k
views
methods/tools to compare/alignment two chromosome-level long DNA sequences
alignment chromosome-level comparative genomics
5.0 years ago by boymin2020 ▴ 80
0
votes
0
replies
1.2k
views
Comment: A: methods/tools to compare/alignment two chromosome-level long DNA sequences
5.0 years ago by boymin2020 ▴ 80
0
votes
0
replies
3.1k
views
Comment: C: Query about memory size usage of Hisat2
5.4 years ago by boymin2020 ▴ 80
0
votes
0
replies
3.1k
views
Comment: C: Query about memory size usage of Hisat2
5.4 years ago by boymin2020 ▴ 80
0
votes
1
reply
3.1k
views
Comment: C: Query about memory size usage of Hisat2
5.4 years ago by boymin2020 ▴ 80
0
votes
1
reply
3.1k
views
Comment: C: Query about memory size usage of Hisat2
5.4 years ago by boymin2020 ▴ 80
0
votes
8
replies
3.1k
views
Query about memory size usage of Hisat2
RNA-Seq Hisat2 silkworm
5.4 years ago by boymin2020 ▴ 80
0
votes
1
reply
1.5k
views
question about the equation of counts in STAR ReadsPerGene.out.tab
STAR ReadsPerGene.out.tab
updated 5.8 years ago by 35k • written 5.8 years ago by ▴ 80
0
votes
0
replies
2.8k
views
Comment: C: convention from vcf to plink
6.3 years ago by boymin2020 ▴ 80
0
votes
0
replies
2.8k
views
Comment: C: convention from vcf to plink
6.3 years ago by boymin2020 ▴ 80
0
votes
1
reply
1.1k
views
Input for -w options of smartpca.perl
smartpca
6.5 years ago by boymin2020 ▴ 80
4
votes
1
reply
2.8k
views
Questions about gene length and GC content in CQN normaliztion
CQN RNA-Seq gene length GC content
updated 6.6 years ago by ▴ 280 • written 6.8 years ago by ▴ 80
0
votes
0
replies
12k
views
Comment: C: Question about the reliability of --check-sex in PLINK2
7.1 years ago by boymin2020 ▴ 80
0
votes
1
reply
12k
views
Comment: C: Question about the reliability of --check-sex in PLINK2
7.1 years ago by boymin2020 ▴ 80
0
votes
1
reply
12k
views
Comment: C: Question about the reliability of --check-sex in PLINK2
updated 7.1 years ago by 45k • written 7.1 years ago by ▴ 80
5
votes
9
replies
12k
views
Question about the reliability of --check-sex in PLINK2
PLINK2 sex-check
updated 7.1 years ago by 11k • written 7.1 years ago by ▴ 80
0
votes
1
reply
1.8k
views
Comment: C: Chromosome lost after merge with vcf-merge
7.1 years ago by boymin2020 ▴ 80
0
votes
1
reply
1.8k
views
Comment: C: Chromosome lost after merge with vcf-merge
7.1 years ago by boymin2020 ▴ 80
1
vote
5
replies
1.8k
views
Chromosome lost after merge with vcf-merge
vcf-merge
7.1 years ago by boymin2020 ▴ 80
0
votes
1
reply
1.4k
views
DE heatmap before or after limma adjustment
Heapmap limma DE
updated 7.1 years ago by 105k • written 7.2 years ago by ▴ 80
0
votes
1
reply
3.0k
views
Comment: C: MaxQuant LFQ data cleanup
7.2 years ago by boymin2020 ▴ 80
1
vote
3
replies
3.0k
views
MaxQuant LFQ data cleanup
MaxQuant
updated 7.2 years ago by 105k • written 7.2 years ago by ▴ 80
0
votes
1
reply
3.0k
views
Comment: C: Read length of RNA-seq from HiSeq 2500
7.4 years ago by boymin2020 ▴ 80
0
votes
1
reply
1.9k
views
pancreatic cancer datasets
pancreatic cancer dataset
updated 7.4 years ago by 89k • written 7.4 years ago by ▴ 80
0
votes
0
replies
1.3k
views
tRNA calling in RNA-seq dataset from a standard sequencing run
rna-seq tRNA methylation
7.4 years ago by boymin2020 ▴ 80
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