User: Roxane Boyer

gravatar for Roxane Boyer
Roxane Boyer180
Reputation:
180
Status:
Trusted
Location:
France/Marseille/IBDM
Last seen:
3 days, 20 hours ago
Joined:
9 months, 4 weeks ago
Email:
r*************@gmail.com

Posts by Roxane Boyer

<prev • 113 results • page 1 of 12 • next >
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Descrease annotation running time by spliting contigs into separated files (maker)
... Hi everyone ! I am using the tool maker to annotate my genome. The problem is that this tool is not using several cores to do the task. So I was wondering, what about splitting my genome assembly contigs into several five (let's said 32, my number of CPU). For example, if I have 64 contigs, the 2 ...
genome annotation maker written 10 days ago by Roxane Boyer180
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Polishing PacBio assembly : The ideal coverage for higly polymorphic species
... Hello everyone ! I need a few advices regarding the final step of my *D. suzukii* assembly, using long PacBio reads : the polishing step. First, let me explain how I obtained the file I am working on. I have made two different assembly using different algorithms : Falcon and Canu. I have assessed ...
polishing busco pacbio genome assembly written 12 days ago by Roxane Boyer180
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Comment: C: Order contig by size
... Sorry, perceived that as ironic, my bad! ...
written 4 weeks ago by Roxane Boyer180
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Comment: C: Order contig by size
... Actually, I have checked the man.. Thanks for the acid comment ...
written 4 weeks ago by Roxane Boyer180
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Comment: C: Order contig by size
... It worked perfectly fine using your tool, thanks ! ...
written 4 weeks ago by Roxane Boyer180
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Comment: C: Order contig by size
... Thanks ! I was trying -rk1,1n ...
written 4 weeks ago by Roxane Boyer180
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Comment: C: Order contig by size
... I actually like your solution ! awk solution was working but in ascending order, I wanted decreasing order. And adding just a --reverse on the sort command didn't solved it so I was running out of solution.. I'm going to try seqkit thanks ! ...
written 4 weeks ago by Roxane Boyer180
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Comment: C: Order contig by size
... Sorry didn't found it... Should I delete my post or marked it as answered ? ...
written 4 weeks ago by Roxane Boyer180
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Order contig by size
... Hi there ! Does anyone has a easy solution to order contig from an assembly by size ? For example, I want that contig1 is the largest, contig 2 is the second largest etc... I can't find a convenient solution (maybe I'm not looking good enough..) Thanks for your help ! Cheers, Roxane ...
assembly script written 4 weeks ago by Roxane Boyer180 • updated 4 weeks ago by shenwei3562.8k
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Comment: C: RepeatModeler finishes without creating output files
... Hello Dave ! I'm currently facing the exact same issue you had... Do you solved your issue ? I would like to know ! Cheers, Roxane ...
written 5 weeks ago by Roxane Boyer180

Latest awards to Roxane Boyer

Appreciated 6 weeks ago, created a post with more than 5 votes. For A: What can I do after my Pacbio genome assembly ?
Teacher 6 weeks ago, created an answer with at least 3 up-votes. For A: What can I do after my Pacbio genome assembly ?
Centurion 6 weeks ago, created 100 posts.
Scholar 12 weeks ago, created an answer that has been accepted. For A: Trouble with Pilon installation
Rising Star 8 months ago, created 50 posts within first three months of joining.
Supporter 8 months ago, voted at least 25 times.

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