User: Roxane Boyer

gravatar for Roxane Boyer
Roxane Boyer740
Reputation:
740
Status:
Trusted
Location:
France / Toulouse / GeT-Plage
Last seen:
10 hours ago
Joined:
2 years, 4 months ago
Email:
r*************@gmail.com

Recently started to work on the Toulouse sequencing platforme GeT-Plage, attached to the French National Institute of Agronomic Research (INRA). I'll most be dealing with Oxford Nanopore generated data.

Posts by Roxane Boyer

<prev • 199 results • page 1 of 20 • next >
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Comment: C: Remove adaptaters from ONT reads : An alternative to Porechop ?
... The hype is real o_o ...
written 2 days ago by Roxane Boyer740
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Comment: C: Remove adaptaters from ONT reads : An alternative to Porechop ?
... I see ;) Bacterial genome with 15000X for the win o/ ...
written 2 days ago by Roxane Boyer740
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Comment: C: Remove adaptaters from ONT reads : An alternative to Porechop ?
... "Near future" ;) Alright, I see, Thanks for the insight then. I'll keep play with Deepbiner tho, because it claims the result contain less than the 30% unclassified reads... Did you ever tried that tool ? ...
written 2 days ago by Roxane Boyer740
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Remove adaptaters from ONT reads : An alternative to Porechop ?
... Hello everyone, I was using Porechop (as everyone I guess) in order to remove adaptaters from ONT reads. This tools is now unsuported (https://www.biostars.org/p/282767/#282775 , https://github.com/rrwick/Porechop), and with rapid changes in ONT softwares, I'm really afraid it will soon be impossib ...
promethion minion ont gridion oxford nanopore written 2 days ago by Roxane Boyer740 • updated 2 days ago by WouterDeCoster34k
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Comment: C: Nanopore only assembly errors
... Hello karthick ! Which tools did you used to asses % of indels before and after polishing ? And also how much coverage did you used for polishing with Nanopolish ? Just for my own curiosity ! Cheers, Roxane ...
written 23 days ago by Roxane Boyer740
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Comment: C: First time using maker
... Hello imda ! It's been a while I didnt used maker, but I can perhaps help you with that ! What are your questions ? Cheers, Roxane ...
written 4 weeks ago by Roxane Boyer740
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Comment: C: Looking for a file : Complete Ref Seq Systematic Classification
... Thanks a lot that was exactly what I was looking for ! Have a nice day :) ...
written 10 weeks ago by Roxane Boyer740
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Looking for a file : Complete Ref Seq Systematic Classification
... Hello Biostar, I'm sorry if this is an innapropriate place to ask for it, but I can't find this file by myself and actually don't know if it exist. I'm looking for a file containing the whole systematic classification of RefSeq, I have a table that would look like this in mind : https://www.encyc ...
classification written 10 weeks ago by Roxane Boyer740 • updated 10 weeks ago by Sej Modha3.8k
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Comment: C: Using the right reference to identify sequences origin
... I have therefore an other question : don't you think that this tool, which kinda compress a sequence using it's most representative k-mers, would be a lot impacted by the used sequencing technolgy ? Both for the raw reads than for the resulting assemblies. Raw PacBio/ONT reads are longer but more er ...
written 12 weeks ago by Roxane Boyer740
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Comment: C: Using the right reference to identify sequences origin
... I can understand why ! I still need to try out few more test in order to make it fit my purpose tho. Because for now a mash dist with whole refseq and a fastq of fish sequence best matche with mammals genome before fish genomes... If you have any kind of experience with parameters I should use to bu ...
written 12 weeks ago by Roxane Boyer740

Latest awards to Roxane Boyer

Good Answer 9 days ago, created an answer that was upvoted at least 5 times. For A: What can I do after my Pacbio genome assembly ?
Popular Question 8 weeks ago, created a question with more than 1,000 views. For Canu assembler : meryl failed after 2 attempts
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Popular Question 3 months ago, created a question with more than 1,000 views. For First time using maker
Prophet 4 months ago, created a post with more than 20 followers. For Polish PacBio assembly with latest PacBio tools : an affordable solution for everyone
Popular Question 4 months ago, created a question with more than 1,000 views. For First time using maker
Scholar 4 months ago, created an answer that has been accepted. For A: Polishing PacBio assembly : The ideal coverage for higly polymorphic species
Appreciated 5 months ago, created a post with more than 5 votes. For A: What can I do after my Pacbio genome assembly ?
Popular Question 5 months ago, created a question with more than 1,000 views. For First time using maker
Popular Question 6 months ago, created a question with more than 1,000 views. For First time using maker
Popular Question 6 months ago, created a question with more than 1,000 views. For What are the ".bax.h5" files generated by PacBio long reads sequencing ?
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Popular Question 9 months ago, created a question with more than 1,000 views. For First time using maker
Popular Question 9 months ago, created a question with more than 1,000 views. For What are the ".bax.h5" files generated by PacBio long reads sequencing ?
Teacher 9 months ago, created an answer with at least 3 up-votes. For A: What can I do after my Pacbio genome assembly ?
Popular Question 11 months ago, created a question with more than 1,000 views. For First time using maker
Popular Question 11 months ago, created a question with more than 1,000 views. For Polish PacBio assembly with latest PacBio tools : an affordable solution for everyone
Popular Question 11 months ago, created a question with more than 1,000 views. For First time using maker
Popular Question 12 months ago, created a question with more than 1,000 views. For First time using maker
Teacher 13 months ago, created an answer with at least 3 up-votes. For A: What can I do after my Pacbio genome assembly ?
Popular Question 13 months ago, created a question with more than 1,000 views. For First time using maker
Popular Question 13 months ago, created a question with more than 1,000 views. For Training Augustus for Maker
Appreciated 13 months ago, created a post with more than 5 votes. For A: What can I do after my Pacbio genome assembly ?
Scholar 13 months ago, created an answer that has been accepted. For A: Trouble with Pilon installation
Good Answer 15 months ago, created an answer that was upvoted at least 5 times. For A: What can I do after my Pacbio genome assembly ?

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