User: Rox

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Rox1.2k
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France / Toulouse / GeT-Plage
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1 month ago
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4 years, 3 months ago
Email:
r*************@gmail.com

Working at the Toulouse sequencing platforme GeT-Plage, attached to the French National Institute of Agronomic Research (INRA) since July 2018. I am in charge of the development and the maintainance of a transfer and primary analysis pipeline for Nanopore sequencers (GridION and PromethION)

Posts by Rox

<prev • 224 results • page 1 of 23 • next >
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Explaining myJuicer.sh different steps
... Hello everyone. As a "side dish" of my main mission, I have to run juicer, the [Hi-C tool from aiden lab][1], to assess the ressources it would need on our **cluster**. I am therefore using the bash wrapper for **Slurm** called *myJuicer.sh*, which manage the different jobs to be submitted with the ...
hi-c juicer written 11 weeks ago by Rox1.2k
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Comment: C: Working abroad without a PhD
... Oh when I talked about uncertainty, I was just refeering to the fact I was asking a question for something that would happen in 2 years, so my post may look like a bit far fetched ! I don't mind temporary position at all, I'm not really looking for only a permanent position. I think it's actually qu ...
written 13 months ago by Rox1.2k
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Comment: C: Working abroad without a PhD
... I imagine it is hard to get good candidates because, within the bioinformatic field, there is so many branches and sub branches. And even if I can be interested in several of them (metagenomics, methylation, and so much more actually), I have trouble considering myself an expert in a particular fiel ...
written 13 months ago by Rox1.2k
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Comment: C: Working abroad without a PhD
... Yes correct ! I do have in mind to settle in the Netherlands if possible. ...
written 13 months ago by Rox1.2k
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Forum: Working abroad without a PhD
... Hello everyone, In the next 2 years, I would like to start living and working out of my original country (France), still in the field of Bioinformatic (and possibly some Nanopore would be involved somewhere). I don't have a PhD, I only have a Master degree and my 2 years of experience in a resear ...
forum work written 13 months ago by Rox1.2k • updated 13 months ago by Carambakaracho2.2k
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Comment: C: Using the MinION MinKNOW software on Ubuntu 1604
... Alright then, as soon as I'll gather enough information, I'll make a tiny tutorial for Guppy :) ...
written 13 months ago by Rox1.2k
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Comment: C: Using the MinION MinKNOW software on Ubuntu 1604
... Cool tutorial ! I was always hesitating on making some Nanopore content on Biostar, because I thought the Nanopore community was "closed" and I thought it wasn't allowed to share informations outside of the community forum. Otherwise, a Guppy tutorial would be more than needed I think, unless it alr ...
written 13 months ago by Rox1.2k
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Comment: C: Snakemake input and wildcards
... Hi finswimmer ! I was planning on adding more rules later, but I wanted to build my first snakescript slowly and leanr step by step. That's why it's frustrating to get stuck at the first rule ! I'll have a look on those link and try to figure out what I am missing. Thanks ...
written 13 months ago by Rox1.2k
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Comment: C: Snakemake input and wildcards
... Here is a more detailed question on stack : https://stackoverflow.com/questions/57675934/how-to-properly-use-wildcards-in-input-and-output ...
written 14 months ago by Rox1.2k
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Comment: C: Python and SLURM environment : clarifications needed
... Yes, I've heard of some of the ones you mentionned such as NextFlow. I think I have a general problem to understand new way of analyzing, I'm used to give my parameters to script in options for example. The snakemake logic really make me think of Ocaml language, which really fart with my brain becau ...
written 14 months ago by Rox1.2k

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