Moderator: Biomonika (Noolean)
Biomonika (Noolean) ♦ 3.1k
- Reputation:
- 3,110
- Status:
- Trusted
- Location:
- State College, PA, USA
- Website:
- http://sites.psu.edu/b...
- Twitter:
- biomonika
- Scholar ID:
- Google Scholar Page
- Last seen:
- 2 months, 1 week ago
- Joined:
- 8 years, 9 months ago
- Email:
- m*****************@gmail.com
Bioinformatics of sequences. Sex chromosomes. Enjoying DNA in my computer.
“I'm fascinated by the idea that genetics is digital. A gene is a long sequence of coded letters, like computer information. Modern biology is becoming very much a branch of information technology.”
Richard Dawkins
Posts by Biomonika (Noolean)
<prev
• 465 results •
page 1 of 47 •
next >
0
votes
1
answer
776
views
1
answers
Comment:
C: positive selection project
... What's your timeline for this project? Are you a student? How did you choose this project? You cannot ultimately prove positive selection, only have strong evidence. It will be frustrating to work on this without help, so I would consider switching projects/professors. ...
written 2.8 years ago by
Biomonika (Noolean) ♦ 3.1k
0
votes
1
answer
963
views
1
answers
... Thank you, this is exactly what I was looking for. ...
written 2.8 years ago by
Biomonika (Noolean) ♦ 3.1k
3
votes
1
answer
963
views
1
answer
... I need to download WGS for healthy women, ideally sequenced on Illumina HiSeq 2000. I intitially looked into 1000G data ([http://www.internationalgenome.org/data/][1]), but it doesn't seem to specify which machine was used for sequencing. I am interested in low complexity sequences and thus worried ...
written 2.8 years ago by
Biomonika (Noolean) ♦ 3.1k
• updated
2.4 years ago by
Biostar ♦♦ 20
1
vote
11
answers
51k
views
11
answers
... That's random seed. Same seed ensures same "random" results (useful for reproducibility). ...
written 2.9 years ago by
Biomonika (Noolean) ♦ 3.1k
0
votes
7
answers
7.3k
views
7
answers
... Actually I don't read SeqAnswers because I miss threads there. That's the only reason. I have spent last 5 years on Biostars though. ...
written 3.3 years ago by
Biomonika (Noolean) ♦ 3.1k
0
votes
1
answer
1.5k
views
1
answer
... I am interested in **calling errors** (especially indels) in my **PacBio alignments**. I want ALL errors to be reported, not only high frequency ones. Thus, the best for me would an alternative to mpileup for Illumina reads. I am considering two options here:
**1) using PacBio-specific software**, ...
written 3.3 years ago by
Biomonika (Noolean) ♦ 3.1k
• updated
2.6 years ago by
tjduncan • 260
0
votes
12
answers
41k
views
12
answers
Comment:
C: How To Split A Multiple Fasta
... I can show an example. These commands worked for me:
`csplit panTro5.fa /\>chr.*/ {*}` followed by `for a in x*; do echo $a; mv $a $(head -1 $a).txt; done;`
As you said, very convenient on machines other than yours. ...
written 3.4 years ago by
Biomonika (Noolean) ♦ 3.1k
0
votes
1
answer
1.5k
views
1
answers
... What specifically do you call within table correlation? ...
written 3.5 years ago by
Biomonika (Noolean) ♦ 3.1k
0
votes
2
answers
1.8k
views
2
answers
... First import your multiref.fasta as a genome and only then load your bam file. ...
written 3.5 years ago by
Biomonika (Noolean) ♦ 3.1k
3
votes
2
answers
2.2k
views
2
answers
... Could [this][1] page help?
![for an inferred insert size that is smaller than expected (insertion)][2]
[igv/interpreting_insert_size][3]
[1]: http://software.broadinstitute.org/software/igv/interpreting_insert_size
[2]: http://software.broadinstitute.org/software/igv/sites/cancerinformatics.o ...
written 3.5 years ago by
Biomonika (Noolean) ♦ 3.1k
Latest awards to Biomonika (Noolean)
Great Question
11 months ago,
created a question with more than 5,000 views.
For How To Assemble Chloroplast Genome?
Good Question
11 months ago,
asked a question that was upvoted at least 5 times.
For Visualize Insert Size For Mate-Pairs And Calculate Statistics
Popular Question
11 months ago,
created a question with more than 1,000 views.
For Pick highest quality fastq reads
Scholar
11 months ago,
created an answer that has been accepted.
For A: How to find out the reverse complement of DNA from each FASTA formated sequence
Popular Question
2.6 years ago,
created a question with more than 1,000 views.
For Where to download raw HGDP data used for population genetics studies
Great Question
2.6 years ago,
created a question with more than 5,000 views.
For How To Assemble Chloroplast Genome?
Appreciated
2.6 years ago,
created a post with more than 5 votes.
For C: Do bioinformaticians often break molecular biologists' hearts by being the first
Popular Question
2.6 years ago,
created a question with more than 1,000 views.
For lowercase fasta coordinates to GFF
Epic Question
2.6 years ago,
created a question with more than 10,000 views.
For How To Extract Set Of Reads From Fastq (Or Eventually Fasta And Qual) Based On List Of Ids?
Epic Question
2.6 years ago,
created a question with more than 10,000 views.
For Coverage In Bam File - Bases And Overall Count
Popular Question
2.6 years ago,
created a question with more than 1,000 views.
For Sine Absent In Maize?
Popular Question
2.6 years ago,
created a question with more than 1,000 views.
For Software to calculate expected sequence identity between two species, given speciation time
Popular Question
2.6 years ago,
created a question with more than 1,000 views.
For How to generate bam files for Quiver
Popular Question
2.6 years ago,
created a question with more than 1,000 views.
For reviewing a paper with software/code I cannot run
Popular Question
2.6 years ago,
created a question with more than 1,000 views.
For Mapping mate-pairs reads with bowtie2
Popular Question
2.6 years ago,
created a question with more than 1,000 views.
For How To Assemble Chloroplast Genome?
Popular Question
2.6 years ago,
created a question with more than 1,000 views.
For per bp depth intersected with gff file
Good Question
2.6 years ago,
asked a question that was upvoted at least 5 times.
For Fastq Format Confusion
Popular Question
2.6 years ago,
created a question with more than 1,000 views.
For Download unspliced RefSeq genes
Popular Question
2.6 years ago,
created a question with more than 1,000 views.
For Extract all members of particular gene family (including pseudogenes)
Popular Question
2.6 years ago,
created a question with more than 1,000 views.
For Human transcriptome reference for RNASeq analysis
Great Question
2.6 years ago,
created a question with more than 5,000 views.
For Blast 2.25+ Segmentation Fault When -Outfmt Set To 6,7 Or 10
Student
2.6 years ago,
asked a question with at least 3 up-votes.
For How To Assemble Chloroplast Genome?
Use of this site constitutes acceptance of our User
Agreement
and Privacy
Policy.
Powered by Biostar
version 2.3.0
Traffic: 1108 users visited in the last hour