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How to convert CIGAR string to VCF?
CIGAR VCF alignment variant-calling
updated 7 months ago by 45k • written 7 months ago by 3.2k
0
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0
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803
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Comment: Comment: Split genotypes in VCF file
7 months ago by Biomonika (Noolean) 3.2k
0
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0
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803
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Comment: Comment: Split genotypes in VCF file
7 months ago by Biomonika (Noolean) 3.2k
2
votes
3
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803
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Split genotypes in VCF file
VCF genotype dipcall
7 months ago by Biomonika (Noolean) 3.2k
27
votes
9
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42k
views
7 follow
How To Extract Set Of Reads From Fastq (Or Eventually Fasta And Qual) Based On List Of Ids?
extraction read 454 fastq fasta
updated 13 months ago by 153k • written 13.3 years ago by 3.2k
7
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9
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5.1k
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lowercase fasta coordinates to GFF
lowercase fasta GFF
updated 3.3 years ago by 45k • written 10.5 years ago by 3.2k
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0
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3.6k
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Comment: C: Convert Phred score 41 to 40
updated 5.7 years ago by 45k • written 11.3 years ago by 3.2k
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0
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8.5k
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Comment: C: Why is DNA split into many fragments before being sequenced by an Illumina seque
updated 5.7 years ago by 45k • written 11.3 years ago by 3.2k
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1
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2.8k
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Comment: C: Split merged BAM file
updated 5.7 years ago by 45k • written 11.3 years ago by 3.2k
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0
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4.4k
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Comment: C: First thing to do when you receive your sequenced genome of interest.
updated 5.7 years ago by 45k • written 11.3 years ago by 3.2k
2
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1
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11k
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Answer: A: Too late to switch to Bioinformatics?
updated 5.7 years ago by 45k • written 11.3 years ago by 3.2k
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1
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4.7k
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Answer: A: Generating Read Length?
updated 5.7 years ago by 45k • written 9.6 years ago by 3.2k
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1
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7.7k
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Comment: C: What is ref sequence name in BAM file header ?
updated 5.7 years ago by 45k • written 10.3 years ago by 3.2k
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1
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8.4k
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Answer: A: Illumina Mate Pair Read Duplication Level
updated 5.8 years ago by 45k • written 11.9 years ago by 3.2k
1
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1
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3.5k
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Comment: C: Running Galaxy tools locally using bx-python
updated 5.8 years ago by 45k • written 9.7 years ago by 3.2k
2
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0
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2.8k
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Answer: A: Identifying distance between mate pairs
updated 5.8 years ago by 45k • written 9.8 years ago by 3.2k
1
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1
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7.4k
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Comment: C: How to check whether a genome is circular
updated 5.8 years ago by 45k • written 9.8 years ago by 3.2k
1
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1
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3.9k
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Comment: C: Bioinformatics job to start.
updated 5.8 years ago by 45k • written 9.9 years ago by 3.2k
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1
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3.8k
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Comment: C: Where to download human alpha satellite from centromeric regions
updated 5.8 years ago by 45k • written 9.9 years ago by 3.2k
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1
reply
2.1k
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Comment: C: evaluation distance in Eukaryotic
updated 5.8 years ago by 45k • written 9.9 years ago by 3.2k
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1
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3.6k
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Comment: C: contigs alignment with long reads
updated 5.8 years ago by 45k • written 9.9 years ago by 3.2k
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1
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3.6k
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Comment: C: contigs alignment with long reads
updated 5.8 years ago by 45k • written 9.9 years ago by 3.2k
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1
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6.9k
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Comment: C: reverse complement in Assembly!
updated 5.8 years ago by 45k • written 9.9 years ago by 3.2k
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1
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6.9k
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Answer: A: reverse complement in Assembly!
updated 5.8 years ago by 45k • written 9.9 years ago by 3.2k
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0
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1.7k
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identify length of repeat arrays with given motif
repeat trf length
updated 5.9 years ago by 20 • written 8.9 years ago by 3.2k
1
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1
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6.8k
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Answer: A: Remove or mask repeat regions from .fasta file
updated 5.9 years ago by 45k • written 10.3 years ago by 3.2k
1
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1
reply
9.3k
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Answer: Answer: Parse VCF file
updated 3.4 years ago by 45k • written 10.6 years ago by 3.2k
0
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3
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6.8k
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Answer: A: Convert FASTQ to FASTA, filter, then convert filtered FASTA back into FASTQ
updated 5.9 years ago by 45k • written 10.8 years ago by 3.2k
0
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1
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6.8k
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Answer: A: bwa report multiple alignments
updated 5.9 years ago by 45k • written 11.1 years ago by 3.2k
1
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1
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2.8k
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Answer: A: Split merged BAM file
updated 5.9 years ago by 45k • written 11.3 years ago by 3.2k
0
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1
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3.7k
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Comment: C: Can'T Find Indels With Samtools (Onyly Get Snps)
updated 5.9 years ago by 45k • written 11.5 years ago by 3.2k
1
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0
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6.3k
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Comment: C: Calculating Sequencing Depth Of A Genomic Region
updated 6.0 years ago by 45k • written 11.5 years ago by 3.2k
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0
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8.5k
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Comment: C: Go Component "Centromeric Region" Associated With Different Parts Of Chrs Of Ara
updated 6.0 years ago by 45k • written 13.5 years ago by 3.2k
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1
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3.1k
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Comment: C: What kind of systematic bias of sequencing data the following normalization proc
updated 7.0 years ago by 45k • written 9.6 years ago by 3.2k
0
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1
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2.4k
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identify long stretches of DNA that 2 sequences share with low similarity (>85%)
blastn
updated 2.7 years ago by 45k • written 10.3 years ago by 3.2k
3
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2
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2.4k
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How Do 5` And 3` Ltr Regions Of Ltr Retrotransposon Look Like?
updated 7.4 years ago by 20 • written 13.9 years ago by 3.2k
3
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3
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2.2k
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WGS data for healthy human women sequenced on Illumina HiSeq 2000?
wgs 1000g illumina hiseq
updated 7.5 years ago by 20 • written 7.9 years ago by 3.2k
0
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1
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3.1k
views
mpileup for PacBio reads
PacBio mpileup variants calling quiver
updated 7.8 years ago by ▴ 280 • written 8.4 years ago by 3.2k
0
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0
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2.1k
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Comment: C: positive selection project
7.9 years ago by Biomonika (Noolean) 3.2k
0
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0
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2.2k
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Comment: C: WGS data for healthy human women sequenced on Illumina HiSeq 2000?
7.9 years ago by Biomonika (Noolean) 3.2k
4
votes
4
replies
8.6k
views
Human transcriptome reference for RNASeq analysis
human transcriptome RNA-seq
updated 3.1 years ago by 45k • written 9.8 years ago by 3.2k
1
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1
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103k
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Comment: C: Selecting Random Pairs From Fastq?
8.1 years ago by Biomonika (Noolean) 3.2k
0
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0
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56k
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Comment: C: How To Split A Multiple Fasta
8.6 years ago by Biomonika (Noolean) 3.2k
0
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1
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3.1k
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Comment: C: avoid within table correlations in rcorr
8.6 years ago by Biomonika (Noolean) 3.2k
0
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1
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4.7k
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Comment: C: Align short reads to multifasta reference - cant see in IGV
8.6 years ago by Biomonika (Noolean) 3.2k
3
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0
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5.6k
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Answer: A: what do read with blue outline represent in IGV?
8.6 years ago by Biomonika (Noolean) 3.2k
0
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0
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2.5k
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Comment: C: Who is an appropriate person to ask for references while applying for PhD?
8.7 years ago by Biomonika (Noolean) 3.2k
0
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1
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2.5k
views
Comment: C: Where does my RNASeq contamination fits on the Tree of Life?
8.7 years ago by Biomonika (Noolean) 3.2k
2
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4
replies
2.5k
views
Where does my RNASeq contamination fits on the Tree of Life?
RNA-Seq rna-seq contamination species algae
8.7 years ago by Biomonika (Noolean) 3.2k
0
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1
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2.8k
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Answer: A: how to replace dot as 'Missing' value for all columns using sed
8.8 years ago by Biomonika (Noolean) 3.2k
449 results • Page 1 of 9
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