Question: WGS data for healthy human women sequenced on Illumina HiSeq 2000?
1
gravatar for Biomonika (Noolean)
9 months ago by
State College, PA, USA
Biomonika (Noolean)3.0k wrote:

I need to download WGS for healthy women, ideally sequenced on Illumina HiSeq 2000. I intitially looked into 1000G data (http://www.internationalgenome.org/data/), but it doesn't seem to specify which machine was used for sequencing. I am interested in low complexity sequences and thus worried the machine type could make a difference to my downstream analysis.

Thank you.

hiseq illumina wgs 1000g • 450 views
ADD COMMENTlink modified 4 months ago by Biostar ♦♦ 20 • written 9 months ago by Biomonika (Noolean)3.0k

Large chunks of the TCGA cohorts would have been sequenced on the 2000, and I think that information will be obtainable, buried deep in the metadata somewhere.

ADD REPLYlink written 9 months ago by Chris Miller20k
2
gravatar for ATpoint
9 months ago by
ATpoint5.7k
Germany
ATpoint5.7k wrote:

How about some of the CEPH pedigree 1463 data (Hiseq2000, 50x). For these, you should also find plenty of validated variant calls if you search around.

ADD COMMENTlink written 9 months ago by ATpoint5.7k

Thank you, this is exactly what I was looking for.

ADD REPLYlink written 9 months ago by Biomonika (Noolean)3.0k
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