Question: WGS data for healthy human women sequenced on Illumina HiSeq 2000?
gravatar for Biomonika (Noolean)
3.0 years ago by
State College, PA, USA
Biomonika (Noolean)3.1k wrote:

I need to download WGS for healthy women, ideally sequenced on Illumina HiSeq 2000. I intitially looked into 1000G data (, but it doesn't seem to specify which machine was used for sequencing. I am interested in low complexity sequences and thus worried the machine type could make a difference to my downstream analysis.

Thank you.

hiseq illumina wgs 1000g • 982 views
ADD COMMENTlink modified 2.5 years ago by Biostar ♦♦ 20 • written 3.0 years ago by Biomonika (Noolean)3.1k

Large chunks of the TCGA cohorts would have been sequenced on the 2000, and I think that information will be obtainable, buried deep in the metadata somewhere.

ADD REPLYlink written 2.9 years ago by Chris Miller21k
gravatar for ATpoint
3.0 years ago by
ATpoint38k wrote:

How about some of the CEPH pedigree 1463 data (Hiseq2000, 50x). For these, you should also find plenty of validated variant calls if you search around.

ADD COMMENTlink written 3.0 years ago by ATpoint38k

Thank you, this is exactly what I was looking for.

ADD REPLYlink written 3.0 years ago by Biomonika (Noolean)3.1k
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