User: BioGeek
BioGeek • 140
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Posts by BioGeek
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... > RF01 567 576 RF01_508_1107_4:0:0_0:0:0_af
I think these are longreads location! Is this possible to get reference chromosome/scaffold/contig location ? ...
written 6 months ago by
BioGeek • 140
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... Here https://bioinformaticsonline.com/pages/view/1332/bioinformatics-companies-in-india ...
written 6 months ago by
BioGeek • 140
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... I wanted to extract the genome coordinate of all those location where longreads are soft/hard clipped.
Genome
] [
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written 8 months ago by
BioGeek • 140
• updated
8 months ago by
Carambakaracho • 1.4k
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... Is this possible to use long-reads in tadpole? ...
written 11 months ago by
BioGeek • 140
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... There are many mapper that uses ONT and PacBio flag separately. I always wonder why? Why not one flag for all kind of long reads? Is this to compensate error rate ? What if I corrected all reads before mapping ? Sorry for my ignorance, but I am curious about it. ...
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... Falcon were used to assemble the genome. After mapping, I notice such cases https://dazzlerblog.files.wordpress.com/2017/04/screen-shot-2017-04-18-at-9-54-01-am.png
I wanted to break the genome by those "error-some" regions (by middle of X and Y in the figure) and re-scaffold them. How to break the ...
written 11 months ago by
BioGeek • 140
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... How to break the assembled genome by error-some regions? I map ONT reads against the genome and it return many misaligned regions, how to break the genome into fragment on those regions ? ...
written 11 months ago by
BioGeek • 140
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... I am looking for a tool, that can along all the long reads against phased genome. I tried the traditional haploid mapper, but it split the reads due to very similar phased genome sequences. ...
written 13 months ago by
BioGeek • 140
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... mapping is done by minimap2 ...
written 16 months ago by
BioGeek • 140
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... I want to focus on all those reads that connect two or more contigs. How to extract ONLY those nanopore reads ? ...
written 16 months ago by
BioGeek • 140
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