Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
0
votes
1
reply
413
views
How can the reads be assemble to unitigs with ONLY EXACT sequence overlaps?
Genome Assembly
updated 19 months ago by ★ 1.2k • written 19 months ago by ▴ 170
4
votes
8
replies
3.0k
views
Polyploid genome and mapping !!
alignment next-gen
updated 22 months ago by 6.4k • written 7.5 years ago by ▴ 170
0
votes
3
replies
1.0k
views
BWA to map reads to distant genome
genome Genome Mappings bwa-mem parameters
3.9 years ago by BioGeek ▴ 170
1
vote
3
replies
1.8k
views
How to extract all ONT reads that connect/overlaps two or more contigs ?
overlaps nanopore reads scaffolding
updated 4.4 years ago by ▴ 160 • written 6.1 years ago by ▴ 170
0
votes
0
replies
2.4k
views
Comment: C: How to extract coordinate of hard and soft clipped long reads ?
5.3 years ago by BioGeek ▴ 170
0
votes
0
replies
8.7k
views
Answer: A: Bioinformatics/Biotech Firms In India
5.3 years ago by BioGeek ▴ 170
0
votes
5
replies
2.4k
views
How to extract coordinate of hard and soft clipped long reads ?
longreads BAM clipped mapping
updated 5.5 years ago by ★ 3.2k • written 5.5 years ago by ▴ 170
0
votes
0
replies
6.3k
views
Comment: C: Extending ends of sequences with the help of reads?
5.7 years ago by BioGeek ▴ 170
2
votes
1
reply
4.0k
views
PacBio and ONT reads difference !
nanopore pacbio reads
updated 5.7 years ago by 35k • written 5.7 years ago by ▴ 170
0
votes
1
reply
1.1k
views
Comment: C: Break the assembled genome by error-some regions !
5.7 years ago by BioGeek ▴ 170
0
votes
4
replies
1.1k
views
Break the assembled genome by error-some regions !
ont genome breaks error Assembly
5.7 years ago by BioGeek ▴ 170
0
votes
1
reply
877
views
Is there any mapper to map the long/short reads against phased genome?
mapper phased alignment reads longreads
5.8 years ago by BioGeek ▴ 170
0
votes
0
replies
1.8k
views
Comment: C: How to extract all ONT reads that connect/overlaps two or more contigs ?
6.1 years ago by BioGeek ▴ 170
0
votes
1
reply
3.5k
views
Comment: C: How to plot overlapping fragments in Circos ?
6.2 years ago by BioGeek ▴ 170
6
votes
6
replies
3.5k
views
How to plot overlapping fragments in Circos ?
Circos Plots Overlaps
6.2 years ago by BioGeek ▴ 170
0
votes
1
reply
3.5k
views
Comment: A: How to plot overlapping fragments in Circos ?
6.2 years ago by BioGeek ▴ 170
1
vote
3
replies
1.0k
views
How to present mapping result ?
mapping result
updated 6.2 years ago by ★ 3.8k • written 6.2 years ago by ▴ 170
8
votes
2
replies
3.6k
views
How to remove split/broken reads from bam file
split samtools graphmap nanopore minimap2
updated 6.2 years ago by ★ 3.6k • written 6.2 years ago by ▴ 170
0
votes
7
replies
2.2k
views
Does the PacBio Reads only contain positive (+) strand?
PacBio NGS
updated 6.3 years ago by ▴ 50 • written 7.2 years ago by ▴ 170
0
votes
0
replies
1.0k
views
Does MIRA do the phasing ?
genome sequencing Assembly mira ngs
6.5 years ago by BioGeek ▴ 170
0
votes
1
reply
5.6k
views
Comment: C: Remove duplicates reads Ids
7.0 years ago by BioGeek ▴ 170
0
votes
1
reply
5.6k
views
Answer: A: Remove duplicates reads Ids
7.0 years ago by BioGeek ▴ 170
3
votes
12
replies
5.6k
views
Remove duplicates reads Ids
reads ids duplicates mapping fastq
7.0 years ago by BioGeek ▴ 170
0
votes
1
reply
5.6k
views
Comment: C: Remove duplicates reads Ids
7.0 years ago by BioGeek ▴ 170
0
votes
0
replies
5.6k
views
Comment: C: Remove duplicates reads Ids
7.0 years ago by BioGeek ▴ 170
1
vote
1
reply
2.0k
views
How to extract high coverage region from BAM?
ngs coverage bam mapping reads
updated 7.0 years ago by 161k • written 7.0 years ago by ▴ 170
1
vote
2
replies
1.8k
views
How does coverage of all contigs varies?
coverage ngs reads depth
updated 7.1 years ago by 35k • written 7.1 years ago by ▴ 170
2
votes
1
reply
1.2k
views
Does all assemble genome stats available on NCBI are at haploid level ?
genome gene stats assembly
updated 7.1 years ago by 104k • written 7.1 years ago by ▴ 170
0
votes
0
replies
2.2k
views
Comment: C: Does the PacBio Reads only contain positive (+) strand?
7.2 years ago by BioGeek ▴ 170
0
votes
1
reply
2.5k
views
Comment: C: How to extract all - strand mapped reads location of reference genome using BAM
7.2 years ago by BioGeek ▴ 170
0
votes
3
replies
2.5k
views
How to extract all - strand mapped reads location of reference genome using BAM file?
BAM SAM NGS Reads
7.2 years ago by BioGeek ▴ 170
3
votes
0
replies
3.6k
views
Answer: A: BINC Exam question paper
7.2 years ago by BioGeek ▴ 170
2
votes
4
replies
2.4k
views
Perl::ForkManager does not speed up ATCG calculation
Perl Parallel Speed ForkManager
updated 7.2 years ago by 43k • written 7.2 years ago by ▴ 170
0
votes
0
replies
1.6k
views
Comment: C: Differentiate "no coverage regions" in bedtools
7.4 years ago by BioGeek ▴ 170
0
votes
0
replies
1.6k
views
Comment: C: Differentiate "no coverage regions" in bedtools
7.4 years ago by BioGeek ▴ 170
3
votes
4
replies
1.6k
views
Differentiate "no coverage regions" in bedtools
ngs bedtools coverage split
updated 7.4 years ago by ★ 2.9k • written 7.4 years ago by ▴ 170
0
votes
1
reply
3.0k
views
Comment: C: Polyploid genome and mapping !!
7.5 years ago by BioGeek ▴ 170
3
votes
1
reply
2.3k
views
Lastz multi thread options !!
alignment
7.5 years ago by BioGeek ▴ 170
21
votes
3
replies
2.5k
views
How to differentiate between "horizontal gene transfer" and "contamination" in NGS data?
genome ngs contamination horizontal
updated 7.5 years ago by 54k • written 7.8 years ago by ▴ 170
0
votes
1
reply
1.5k
views
Comment: C: Reduce the number of PE reads by half
7.7 years ago by BioGeek ▴ 170
6
votes
8
replies
1.5k
views
Reduce the number of PE reads by half
Assembly NGS PE Reads
updated 7.7 years ago by 13k • written 7.7 years ago by ▴ 170
41 results • Page 1 of 1
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6