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User: reza

gravatar for reza
reza • 190
Reputation:
190
Status:
Trusted
Location:
Iran
Last seen:
3 weeks, 3 days ago
Joined:
1 year, 10 months ago
Email:
r********@gmail.com

i am here to learn

Posts by reza

<prev • 88 results • page 1 of 9 • next >
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Comment: C: Correct Trimmomatic adapter sequence file to use?
... if it is possible for you, use [cutadapt][1] and define your own adapters for it to remove them. Although you can create a fasta file includes your adapters for [Trimmomatic][2] [1]: http://cutadapt.readthedocs.io/en/stable/ [2]: http://www.usadellab.org/cms/?page=trimmomatic ...
written 6 weeks ago by reza • 190
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Comment: C: how to retrieve sequences from genome
... you can use [extractseq][1] in [EMBOSS][2] [1]: http://emboss.bioinformatics.nl/cgi-bin/emboss/extractseq [2]: http://emboss.sourceforge.net/ ...
written 6 weeks ago by reza • 190
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Comment: C: CNV detection using BAM file
... Thanks vchris_ngs, I will use your advice. ...
written 9 weeks ago by reza • 190
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Comment: C: CNV detection using BAM file
... Thanks for your clear response Eric. ...
written 9 weeks ago by reza • 190
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Comment: C: CNV detection using BAM file
... no more help to my request? ...
written 9 weeks ago by reza • 190
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Comment: C: CNV detection using BAM file
... i want to use FREEC control but my question is not related to used software ...
written 10 weeks ago by reza • 190
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5 follow
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CNV detection using BAM file
... Hi everyone i want to detect CNV from BAM file. My question is: in what level i can use BAM file to CNV detection. I mean, unsorted BAM or Sorted BAM or deduplicated BAM (Using Picard) or realigned BAM (using GATK) is better to CNV calling? ...
bam cnv written 10 weeks ago by reza • 190 • updated 9 weeks ago by Eric T. • 2.1k
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Comment: C: GATK Variant calling
... this link can be helpful https://gencore.bio.nyu.edu/variant-calling-pipeline/ ...
written 4 months ago by reza • 190
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Comment: C: segmentation fault (core dumped) error when using BWA and BOWTIE
... Devon, is your opinion that the problem is related to hardware such as RAM? ...
written 4 months ago by reza • 190
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Comment: C: segmentation fault (core dumped) error when using BWA and BOWTIE
... 5heikki, i did mapping on my PC previously without any problem on same data but now i have this problem whit it. After the problem occurred, I installed the new Linux, but the problem did not fix ...
written 4 months ago by reza • 190

Latest awards to reza

Popular Question 9 weeks ago, created a question with more than 1,000 views. For building database in snpEff
Popular Question 3 months ago, created a question with more than 1,000 views. For building database in snpEff
Commentator 16 months ago, created a comment with at least 3 up-votes. For C: Problems with Trimmomatic PE output files
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