User: reza

gravatar for reza
reza160
Reputation:
160
Status:
Trusted
Location:
Iran
Last seen:
1 week, 2 days ago
Joined:
1 year, 7 months ago
Email:
r********@gmail.com

i am here to learn

Posts by reza

<prev • 81 results • page 1 of 9 • next >
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Comment: C: GATK Variant calling
... this link can be helpful https://gencore.bio.nyu.edu/variant-calling-pipeline/ ...
written 6 weeks ago by reza160
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Comment: C: segmentation fault (core dumped) error when using BWA and BOWTIE
... Devon, is your opinion that the problem is related to hardware such as RAM? ...
written 6 weeks ago by reza160
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Comment: C: segmentation fault (core dumped) error when using BWA and BOWTIE
... 5heikki, i did mapping on my PC previously without any problem on same data but now i have this problem whit it. After the problem occurred, I installed the new Linux, but the problem did not fix ...
written 6 weeks ago by reza160
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Comment: C: segmentation fault (core dumped) error when using BWA and BOWTIE
... Devon, Can you give me more guidance? it is worth to mentioned that i got the segmentation error in my previous linux and after install new linux on my PC, i get same error on new linux. ...
written 6 weeks ago by reza160
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segmentation fault (core dumped) error when using BWA and BOWTIE
... hi everyone i got segmentation fault (core dumped) error when using BWA (mem) and BOWTIE (index). anybody know how can i resolve this error? i try with different versions of mentioned programs and get same error. also sometimes i get "bus error". ...
software error bwa bowtie written 6 weeks ago by reza160 • updated 6 weeks ago by Devon Ryan76k
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Comment: C: receive GC-content profile for a given window-size and splitting multi fasta fil
... it does not work for me. cat DROM_5000.fa | ./pythonscript.py File "./pythonscript.py", line 9 name = # process your line accordingly to get the sequence / scaffold name ^ SyntaxError: invalid syntax ...
written 11 weeks ago by reza160
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Comment: C: receive GC-content profile for a given window-size and splitting multi fasta fil
... the following format is for GC-content profile for a given window-size (50000) that freec-control need it. first column:chromosome name; column two: window-size, column tree: GC-content, column four: percentage of ACGT-letter per window (1-poly(N)%). the file containing the following information is ...
written 11 weeks ago by reza160 • updated 11 weeks ago by GenoMax42k
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receive GC-content profile for a given window-size and splitting multi fasta file into separate fasta files by contigs name for running control-free
... i have two question about control-FREE 1.how can i receive GC-content profile for a given window-size (50000) for a reference genome in fasta file? 2.how can i split multi fasta file into separate fasta files by contigs name? (original fasta have ~32000 contig and after separation i must have 3200 ...
splitting fasta written 11 weeks ago by reza160 • updated 11 weeks ago by GenoMax42k
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how to create target region track for CNV detection using Biomedical genomics workbench
... i want to identify CNV using WGS data. i mapped my reads into reference genome and now using Biomedical genomics workbench, i wanna detect CNV in whole genome not targeted region but copy number variation tool in Biomedical genomics workbench require target region track. i read software manual but I ...
target region clc cnv written 12 weeks ago by reza160
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change fastq header
... i have a fastq file that have headers like "@HWI-ST916:209:XXXX:2:1101:1104:1915 1:N:0:", Now i want to convert them like "@HWI-ST916:209:XXXX:2:1101:1104:1915/1" how can i do it? thanks in advance ...
fastq written 3 months ago by reza160 • updated 3 months ago by Pierre Lindenbaum104k

Latest awards to reza

Commentator 13 months ago, created a comment with at least 3 up-votes. For C: Problems with Trimmomatic PE output files

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