User: reza

gravatar for reza
reza250
Reputation:
250
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Trusted
Location:
Iran
Last seen:
1 month, 2 weeks ago
Joined:
4 years, 7 months ago
Email:
r********@gmail.com

i am here to learn

Posts by reza

<prev • 115 results • page 1 of 12 • next >
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Comment: C: error in running Combat function
... Dear ATpoint, you have no advice to solve this error? ...
written 7 weeks ago by reza250
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Comment: C: error in running Combat function
... Sets <- (c(rep("GSEx", 12), rep("GSExx", 12), rep("GSExxx", 9), rep("GSExxxx", 13))) AND > dput(head(all)) structure(list(A1 = c(6.9381, 7.5079, 7.2303, 8.9908, 8.2564, 11.0564), A2 = c(6.9594, 7.3883, 7.1023, 8.9328, 8.1679, 10.8513 ), A3 = c(6.8419, 7.2109, 6.9548, 8. ...
written 7 weeks ago by reza250
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Comment: C: error in running Combat function
... how can I do that using dput() function? ...
written 7 weeks ago by reza250
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error in running Combat function
... I run the same commands on the same data in Rstudio in Windows and Linux, but I get different results in step removing batch effect using “Combat” function (sva package). Running “Combat” on Windows is error-free, while on Linux I get the following error: Error in ((dat - t(design %*% B.hat))^2 ...
r studio R sva combat written 7 weeks ago by reza250
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Meta-Analysis of Microarray data (Afyymetrix)
... Hi everyone I am doing a meta-analysis of microarray data (AffyMetrix; 4 sets). Normalization by RMA using the “Afyy” package in R and extraction of normalized data was done. >rawdata<-ReadAffy() >PM<-probes(rawdata,which="pm") >AffyInfo&l ...
R meta-analysis affymetrix microarray written 7 months ago by reza250
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extraction of scaffolds from SOAPdenovo output
... hi everyone I did a denovo-assembly using soapdenove, now the output of soap, tell me that I have 1744860 singletons and 95021 scaffolds. I want to extract scaffolds from the output file. anybody can help me to do that? ...
assembly next-gen soapdenovo scaffold written 8 months ago by reza250
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Comment: C: A problem with download SRA using SRA toolkit
... Yes, this command is vdb-config -i (command for opening configuration window) actually. after configuration, this message will be repeated again and again ...
written 12 months ago by reza250
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A problem with download SRA using SRA toolkit
... I want to download the SRA using SRA toolkit, so I installed it using this guidance: https://github.com/ncbi/sra-tools/wiki/Building-and-Installing-from-Source and then configured it using this guidance: https://github.com/ncbi/sra-tools/wiki/05.-Toolkit-Configuration but when I used below comma ...
ncbi sra sra toolkit configuration written 12 months ago by reza250 • updated 5 months ago by eynardrenaud0
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Comment: C: Multiple genome comparison for new genetic markers
... There are so many resources that can help you in this field; You just have to do a simple search in Google. like this: [Variant Calling Pipeline: FastQ to Annotated SNPs in Hours][1] [1]: https://gencore.bio.nyu.edu/variant-calling-pipeline/ ...
written 16 months ago by reza250
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Comment: C: Issue with Bowtie2 mapping
... Thank you for trying to help me. i have no problem with reads number. Program in each run, show different behaviors, which I think is due to the existence of a bug. ...
written 18 months ago by reza250

Latest awards to reza

Popular Question 6 months ago, created a question with more than 1,000 views. For CNV detection using BAM file
Popular Question 6 months ago, created a question with more than 1,000 views. For Augustus running error
Popular Question 6 months ago, created a question with more than 1,000 views. For cygwin error when i try to install platypus (variant caller)
Popular Question 6 months ago, created a question with more than 1,000 views. For change fastq header
Popular Question 6 months ago, created a question with more than 1,000 views. For segmentation fault (core dumped) error when using BWA and BOWTIE
Popular Question 6 months ago, created a question with more than 1,000 views. For SNP annotation in non model animals
Popular Question 13 months ago, created a question with more than 1,000 views. For CLC worcbench assembly
Popular Question 13 months ago, created a question with more than 1,000 views. For installing ABYSS using cygwin
Popular Question 18 months ago, created a question with more than 1,000 views. For CLC worcbench assembly
Popular Question 18 months ago, created a question with more than 1,000 views. For CLC worcbench assembly
Popular Question 22 months ago, created a question with more than 1,000 views. For CLC worcbench assembly
Popular Question 22 months ago, created a question with more than 1,000 views. For CNV detection using BAM file
Popular Question 22 months ago, created a question with more than 1,000 views. For SNP annotation in non model animals
Popular Question 22 months ago, created a question with more than 1,000 views. For cygwin error when i try to install platypus (variant caller)
Popular Question 22 months ago, created a question with more than 1,000 views. For segmentation fault (core dumped) error when using BWA and BOWTIE
Popular Question 22 months ago, created a question with more than 1,000 views. For how to select longest isoform per gene in gtf
Popular Question 22 months ago, created a question with more than 1,000 views. For Augustus running error
Popular Question 24 months ago, created a question with more than 1,000 views. For CLC worcbench assembly
Popular Question 24 months ago, created a question with more than 1,000 views. For Augustus running error
Popular Question 24 months ago, created a question with more than 1,000 views. For workflow for variant calling using GATK in multiple paired end reads
Popular Question 2.1 years ago, created a question with more than 1,000 views. For cygwin error when i try to install platypus (variant caller)
Popular Question 2.1 years ago, created a question with more than 1,000 views. For Augustus running error
Centurion 2.2 years ago, created 100 posts.

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