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696
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pooled-heterozygosity calculation
VCF Population-Genetics WGS Selective-sweep
updated 4 months ago by • 0 • written 19 months ago by ▴ 300
0
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1
reply
484
views
Prolem with Dsuite program for introgression test
Introgression Dsuite
updated 5 months ago by • 0 • written 8 months ago by ▴ 300
0
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0
replies
223
views
How to determine a threshold for fdm parameter to identify introgressed regions on genome
WGS Introgression Dsuite
8 months ago by reza ▴ 300
0
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1
reply
474
views
ERROR: Variant physical position must be monotonically increasing
XPEHH selscan
updated 17 months ago by ★ 2.8k • written 17 months ago by ▴ 300
0
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0
replies
389
views
different windows and snps for same vcf file while i calculate genetic diversity using vcftools
vcftools pi
17 months ago by reza ▴ 300
0
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0
replies
268
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Pooled-heterozigosity (SECTION2)
Hp VCF Pooled_Heterozygosity
18 months ago by reza ▴ 300
0
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0
replies
914
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Comment: Comment: Annotation of vcftools fst output using GTF or GFF
18 months ago by reza ▴ 300
0
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1
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914
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Comment: Comment: Annotation of vcftools fst output using GTF or GFF
18 months ago by reza ▴ 300
2
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4
replies
914
views
Annotation of vcftools fst output using GTF or GFF
fst vcftools annotation GTF
18 months ago by reza ▴ 300
1
vote
1
reply
1.9k
views
Comment: Comment: Bam file depth of coverage and statstics
18 months ago by reza ▴ 300
0
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1
reply
1.9k
views
Comment: Comment: Bam file depth of coverage and statstics
18 months ago by reza ▴ 300
0
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0
replies
2.2k
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Comment: Comment: GATK-Allele frequency
19 months ago by reza ▴ 300
0
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1
reply
1.9k
views
Comment: Comment: Bam file depth of coverage and statstics
19 months ago by reza ▴ 300
1
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1
reply
1.1k
views
Comment: Comment: ABBA BABA test for two population
19 months ago by reza ▴ 300
1
vote
4
replies
1.1k
views
ABBA BABA test for two population
introgression genetics Population ABAB-BABA
updated 19 months ago by ▴ 50 • written 19 months ago by ▴ 300
0
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0
replies
744
views
Comment: Comment: How to filter GATK vcf file using other programs
21 months ago by reza ▴ 300
0
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1
reply
744
views
Comment: Comment: How to filter GATK vcf file using other programs
21 months ago by reza ▴ 300
0
votes
4
replies
744
views
How to filter GATK vcf file using other programs
VCF Filtration GATK
21 months ago by reza ▴ 300
1
vote
1
reply
679
views
Adding read groups to mark duplicated bam file
Picard GATK
updated 21 months ago by ★ 1.2k • written 21 months ago by ▴ 300
0
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0
replies
1.2k
views
Comment: Comment: how to removed the first two nucleotides from a fastq file (single-end)
24 months ago by reza ▴ 300
1
vote
0
replies
966
views
Comment: Comment: Problem with limma in microarray analysis
24 months ago by reza ▴ 300
0
votes
1
reply
966
views
Comment: Comment: Problem with limma in microarray analysis
24 months ago by reza ▴ 300
0
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1
reply
966
views
Comment: Comment: Problem with limma in microarray analysis
24 months ago by reza ▴ 300
5
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6
replies
966
views
Problem with limma in microarray analysis
limma microarray R
24 months ago by reza ▴ 300
1
vote
7
replies
12k
views
A problem with download SRA using SRA toolkit
SRA SRA toolkit Configuration NCBI
updated 2.0 years ago by • 0 • written 3.3 years ago by ▴ 300
0
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1
reply
1.4k
views
Comment: Comment: big loss after markduplication
2.1 years ago by reza ▴ 300
0
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0
replies
1.4k
views
Comment: Comment: big loss after markduplication
2.1 years ago by reza ▴ 300
0
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0
replies
1.4k
views
Comment: Comment: big loss after markduplication
2.1 years ago by reza ▴ 300
0
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1
reply
1.4k
views
Comment: Comment: big loss after markduplication
2.1 years ago by reza ▴ 300
0
votes
1
reply
1.4k
views
Comment: Comment: big loss after markduplication
2.1 years ago by reza ▴ 300
1
vote
10
replies
1.4k
views
big loss after markduplication
MarkDuplicates Re-sequencing Picard
updated 2.1 years ago by ▴ 120 • written 2.1 years ago by ▴ 300
1
vote
1
reply
539
views
variant calling using masked reference genome
Bowtie2 Reference Genome Variant Calling
2.2 years ago by reza ▴ 300
0
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1
reply
1.0k
views
Comment: C: error in running Combat function
2.4 years ago by reza ▴ 300
0
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1
reply
1.0k
views
Comment: C: error in running Combat function
2.4 years ago by reza ▴ 300
0
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1
reply
1.0k
views
Comment: C: error in running Combat function
2.4 years ago by reza ▴ 300
0
votes
6
replies
1.0k
views
error in running Combat function
R sva Combat R studio
2.4 years ago by reza ▴ 300
0
votes
0
replies
554
views
Meta-Analysis of Microarray data (Afyymetrix)
Meta-Analysis Microarray Affymetrix R
2.8 years ago by reza ▴ 300
0
votes
0
replies
463
views
extraction of scaffolds from SOAPdenovo output
next-gen Assembly soapdenovo scaffold
3.0 years ago by reza ▴ 300
0
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1
reply
12k
views
Comment: C: A problem with download SRA using SRA toolkit
3.2 years ago by reza ▴ 300
0
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0
replies
6.4k
views
Comment: C: Obtain one vcf file of shared SNPs from input files with different samples using
updated 3.4 years ago by 39k • written 5.9 years ago by ▴ 300
0
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2
replies
578
views
Comment: C: Multiple genome comparison for new genetic markers
3.6 years ago by reza ▴ 300
0
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1
reply
923
views
Comment: C: Issue with Bowtie2 mapping
3.8 years ago by reza ▴ 300
0
votes
1
reply
923
views
Comment: C: Issue with Bowtie2 mapping
3.8 years ago by reza ▴ 300
0
votes
7
replies
923
views
Issue with Bowtie2 mapping
Bowtie2 Trimmomatic mapping Paired-End
3.8 years ago by reza ▴ 300
0
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1
reply
923
views
Comment: C: Issue with Bowtie2 mapping
3.8 years ago by reza ▴ 300
4
votes
3
replies
2.1k
views
whole genome alignment using nucmer
Assembly alignment genome nucmer
updated 4.1 years ago by ▴ 130 • written 4.1 years ago by ▴ 300
0
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0
replies
1.3k
views
Comment: C: variant calling in mitochondria using whole genome sequencing
4.4 years ago by reza ▴ 300
1
vote
2
replies
1.3k
views
variant calling in mitochondria using whole genome sequencing
mitochondria SNP
4.4 years ago by reza ▴ 300
0
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1
reply
2.4k
views
Comment: C: several effect for one SNP annotated by SNPeff
4.4 years ago by reza ▴ 300
3
votes
8
replies
2.4k
views
several effect for one SNP annotated by SNPeff
SNPeff annotation SNP
4.4 years ago by reza ▴ 300
146 results • Page 1 of 3
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