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0
votes
1
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696
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pooled-heterozygosity calculation
VCF
Population-Genetics
WGS
Selective-sweep
updated 4 months ago by
mmcui0018
• 0 • written 19 months ago by
reza
▴ 300
0
votes
1
reply
484
views
Prolem with Dsuite program for introgression test
Introgression
Dsuite
updated 5 months ago by
Ken
• 0 • written 8 months ago by
reza
▴ 300
0
votes
0
replies
223
views
How to determine a threshold for fdm parameter to identify introgressed regions on genome
WGS
Introgression
Dsuite
8 months ago by
reza
▴ 300
0
votes
1
reply
474
views
ERROR: Variant physical position must be monotonically increasing
XPEHH
selscan
updated 17 months ago by
Vincent Laufer
★ 2.8k • written 17 months ago by
reza
▴ 300
0
votes
0
replies
389
views
different windows and snps for same vcf file while i calculate genetic diversity using vcftools
vcftools
pi
17 months ago by
reza
▴ 300
0
votes
0
replies
268
views
Pooled-heterozigosity (SECTION2)
Hp
VCF
Pooled_Heterozygosity
18 months ago by
reza
▴ 300
0
votes
0
replies
914
views
Comment:
Comment: Annotation of vcftools fst output using GTF or GFF
18 months ago by
reza
▴ 300
0
votes
1
reply
914
views
Comment:
Comment: Annotation of vcftools fst output using GTF or GFF
18 months ago by
reza
▴ 300
2
votes
4
replies
914
views
Annotation of vcftools fst output using GTF or GFF
fst
vcftools
annotation
GTF
18 months ago by
reza
▴ 300
1
vote
1
reply
1.9k
views
Comment:
Comment: Bam file depth of coverage and statstics
18 months ago by
reza
▴ 300
0
votes
1
reply
1.9k
views
Comment:
Comment: Bam file depth of coverage and statstics
18 months ago by
reza
▴ 300
0
votes
0
replies
2.2k
views
Comment:
Comment: GATK-Allele frequency
19 months ago by
reza
▴ 300
0
votes
1
reply
1.9k
views
Comment:
Comment: Bam file depth of coverage and statstics
19 months ago by
reza
▴ 300
1
vote
1
reply
1.1k
views
Comment:
Comment: ABBA BABA test for two population
19 months ago by
reza
▴ 300
1
vote
4
replies
1.1k
views
ABBA BABA test for two population
introgression
genetics
Population
ABAB-BABA
updated 19 months ago by
Vic
▴ 50 • written 19 months ago by
reza
▴ 300
0
votes
0
replies
744
views
Comment:
Comment: How to filter GATK vcf file using other programs
21 months ago by
reza
▴ 300
0
votes
1
reply
744
views
Comment:
Comment: How to filter GATK vcf file using other programs
21 months ago by
reza
▴ 300
0
votes
4
replies
744
views
How to filter GATK vcf file using other programs
VCF
Filtration
GATK
21 months ago by
reza
▴ 300
1
vote
1
reply
679
views
Adding read groups to mark duplicated bam file
Picard
GATK
updated 21 months ago by
vdauwera
★ 1.2k • written 21 months ago by
reza
▴ 300
0
votes
0
replies
1.2k
views
Comment:
Comment: how to removed the first two nucleotides from a fastq file (single-end)
24 months ago by
reza
▴ 300
1
vote
0
replies
966
views
Comment:
Comment: Problem with limma in microarray analysis
24 months ago by
reza
▴ 300
0
votes
1
reply
966
views
Comment:
Comment: Problem with limma in microarray analysis
24 months ago by
reza
▴ 300
0
votes
1
reply
966
views
Comment:
Comment: Problem with limma in microarray analysis
24 months ago by
reza
▴ 300
5
votes
6
replies
966
views
Problem with limma in microarray analysis
limma
microarray
R
24 months ago by
reza
▴ 300
1
vote
7
replies
12k
views
A problem with download SRA using SRA toolkit
SRA
SRA toolkit
Configuration
NCBI
updated 2.0 years ago by
Mallikarjun S
• 0 • written 3.3 years ago by
reza
▴ 300
0
votes
1
reply
1.4k
views
Comment:
Comment: big loss after markduplication
2.1 years ago by
reza
▴ 300
0
votes
0
replies
1.4k
views
Comment:
Comment: big loss after markduplication
2.1 years ago by
reza
▴ 300
0
votes
0
replies
1.4k
views
Comment:
Comment: big loss after markduplication
2.1 years ago by
reza
▴ 300
0
votes
1
reply
1.4k
views
Comment:
Comment: big loss after markduplication
2.1 years ago by
reza
▴ 300
0
votes
1
reply
1.4k
views
Comment:
Comment: big loss after markduplication
2.1 years ago by
reza
▴ 300
1
vote
10
replies
1.4k
views
big loss after markduplication
MarkDuplicates
Re-sequencing
Picard
updated 2.1 years ago by
David Parry
▴ 120 • written 2.1 years ago by
reza
▴ 300
1
vote
1
reply
539
views
variant calling using masked reference genome
Bowtie2
Reference Genome
Variant Calling
2.2 years ago by
reza
▴ 300
0
votes
1
reply
1.0k
views
Comment:
C: error in running Combat function
2.4 years ago by
reza
▴ 300
0
votes
1
reply
1.0k
views
Comment:
C: error in running Combat function
2.4 years ago by
reza
▴ 300
0
votes
1
reply
1.0k
views
Comment:
C: error in running Combat function
2.4 years ago by
reza
▴ 300
0
votes
6
replies
1.0k
views
error in running Combat function
R
sva
Combat
R studio
2.4 years ago by
reza
▴ 300
0
votes
0
replies
554
views
Meta-Analysis of Microarray data (Afyymetrix)
Meta-Analysis
Microarray
Affymetrix
R
2.8 years ago by
reza
▴ 300
0
votes
0
replies
463
views
extraction of scaffolds from SOAPdenovo output
next-gen
Assembly
soapdenovo
scaffold
3.0 years ago by
reza
▴ 300
0
votes
1
reply
12k
views
Comment:
C: A problem with download SRA using SRA toolkit
3.2 years ago by
reza
▴ 300
0
votes
0
replies
6.4k
views
Comment:
C: Obtain one vcf file of shared SNPs from input files with different samples using
updated 3.4 years ago by
Ram
39k • written 5.9 years ago by
reza
▴ 300
0
votes
2
replies
578
views
Comment:
C: Multiple genome comparison for new genetic markers
3.6 years ago by
reza
▴ 300
0
votes
1
reply
923
views
Comment:
C: Issue with Bowtie2 mapping
3.8 years ago by
reza
▴ 300
0
votes
1
reply
923
views
Comment:
C: Issue with Bowtie2 mapping
3.8 years ago by
reza
▴ 300
0
votes
7
replies
923
views
Issue with Bowtie2 mapping
Bowtie2
Trimmomatic
mapping
Paired-End
3.8 years ago by
reza
▴ 300
0
votes
1
reply
923
views
Comment:
C: Issue with Bowtie2 mapping
3.8 years ago by
reza
▴ 300
4
votes
3
replies
2.1k
views
whole genome alignment using nucmer
Assembly
alignment
genome
nucmer
updated 4.1 years ago by
harishk0201
▴ 130 • written 4.1 years ago by
reza
▴ 300
0
votes
0
replies
1.3k
views
Comment:
C: variant calling in mitochondria using whole genome sequencing
4.4 years ago by
reza
▴ 300
1
vote
2
replies
1.3k
views
variant calling in mitochondria using whole genome sequencing
mitochondria
SNP
4.4 years ago by
reza
▴ 300
0
votes
1
reply
2.4k
views
Comment:
C: several effect for one SNP annotated by SNPeff
4.4 years ago by
reza
▴ 300
3
votes
8
replies
2.4k
views
several effect for one SNP annotated by SNPeff
SNPeff
annotation
SNP
4.4 years ago by
reza
▴ 300
146 results • Page
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