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Answer: Answer: bedToBigBed error, what am I doing wrong?
5 weeks ago by Pierre Lindenbaum 161k
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420
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Answer: Answer: Biostrings extract read
5 weeks ago by Pierre Lindenbaum 161k
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1
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445
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Answer: Answer: How to add FORMAT/TAG = "." to all samples in a vcf file via bcftools?
5 weeks ago by Pierre Lindenbaum 161k
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330
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Answer: Answer: error in wigToBigWig while converting mappability to bedgraph
5 weeks ago by Pierre Lindenbaum 161k
3
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240
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Answer: Answer: Problem with .bed file
5 weeks ago by Pierre Lindenbaum 161k
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370
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Answer: Answer: Can't use VarScan2 to call somatic variants from my tumor/sample vcf pair
6 weeks ago by Pierre Lindenbaum 161k
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235
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Answer: Answer: converting VCF files to TSV file
6 weeks ago by Pierre Lindenbaum 161k
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1
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276
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Answer: Answer: Bed file filtering
6 weeks ago by Pierre Lindenbaum 161k
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0
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231
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Answer: Answer: Query Name too long - samtools
6 weeks ago by Pierre Lindenbaum 161k
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0
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253
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Answer: Answer: Merging 2 VCF files using bcftools, however how should I update the fields accor
7 weeks ago by Pierre Lindenbaum 161k
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0
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556
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Answer: Answer: i'm trying to use STAR and there is a problem...
7 weeks ago by Pierre Lindenbaum 161k
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0
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649
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Answer: Answer: Warning: Expected at least 2 parts in FORMAT entry: ID=GP,Number=3,Type=Float,De
7 weeks ago by Pierre Lindenbaum 161k
3
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418
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Answer: Answer: How to merge VCF files from multiple samples and remove individual level informa
7 weeks ago by Pierre Lindenbaum 161k
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1
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2.5k
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Answer: Answer: Coovar: Co-Occurring Variant Analyzer
7 weeks ago by Pierre Lindenbaum 161k
0
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1
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447
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Answer: Answer: Issues filtering VCF file with bcftools/vcftools
7 weeks ago by Pierre Lindenbaum 161k
2
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383
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Answer: Answer: Uploading HiC track on UCSC browser
7 weeks ago by Pierre Lindenbaum 161k
0
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208
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Answer: Answer: How does one create a custom VCF file?
7 weeks ago by Pierre Lindenbaum 161k
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397
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Answer: Answer: blast in python
8 weeks ago by Pierre Lindenbaum 161k
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0
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241
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Answer: Answer: How to get population specific SNPs from a vcf file
8 weeks ago by Pierre Lindenbaum 161k
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1
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442
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Answer: Answer: Selection of GTF file from gencode
8 weeks ago by Pierre Lindenbaum 161k
2
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1
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353
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Answer: Answer: GnomAD
8 weeks ago by Pierre Lindenbaum 161k
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1
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464
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Answer: Answer: CollectVariantCallingMetrics Error
8 weeks ago by Pierre Lindenbaum 161k
1
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1
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371
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Answer: Answer: how to remove FORMAT field in vcf field
8 weeks ago by Pierre Lindenbaum 161k
1
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0
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292
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Answer: Answer: get flanking sequences of a SNP in a vcf
8 weeks ago by Pierre Lindenbaum 161k
1
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1
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397
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Answer: Answer: Would a string composed of `#CHROM`, `POS`, `REF` and `ALT` uniquely identify a
9 weeks ago by Pierre Lindenbaum 161k
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1
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496
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Answer: Answer: Maximum returned records using epost?
9 weeks ago by Pierre Lindenbaum 161k
0
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1
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581
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Answer: Answer: Bcftools view error
9 weeks ago by Pierre Lindenbaum 161k
2
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0
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790
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Answer: Answer: It's my first time doing alignment and i keep getting this message, is this norm
9 weeks ago by Pierre Lindenbaum 161k
1
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0
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637
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Answer: Answer: Separating bam file based on directionality / samtools view -F/-f option(s) appe
10 weeks ago by Pierre Lindenbaum 161k
0
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0
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453
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Answer: Answer: genomecov -d -pc -ibam showing no coverage for every position
10 weeks ago by Pierre Lindenbaum 161k
5
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484
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Answer: Answer: samtools index error - "Unsorted positions on sequence" even though file is sort
10 weeks ago by Pierre Lindenbaum 161k
2
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1
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504
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Answer: Answer: Extract SNPs present in mutants
10 weeks ago by Pierre Lindenbaum 161k
3
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1
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332
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Answer: Answer: How to exclude reads from a fastq file, using a list of read names?
11 weeks ago by Pierre Lindenbaum 161k
2
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1
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649
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Answer: Answer: Split large deletion D in CIGAR string and filtering reads
12 weeks ago by Pierre Lindenbaum 161k
4
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1
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354
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Answer: Answer: line 1: syntax error near unexpected token `Rsubread
12 weeks ago by Pierre Lindenbaum 161k
3
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0
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565
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Answer: Answer: Creating a csv in a specific format from FASTQ file names
12 weeks ago by Pierre Lindenbaum 161k
0
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1
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553
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Answer: Answer: filter reads with >90% match
3 months ago by Pierre Lindenbaum 161k
0
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1
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917
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Answer: Answer: How to save the results of norm to txt
3 months ago by Pierre Lindenbaum 161k
1
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1
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899
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Answer: Answer: nfcore/fetchngs : Error: fasterq-dump cannot create this file
3 months ago by Pierre Lindenbaum 161k
0
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0
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235
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Answer: Answer: Importing read pairs from BAM with specific R1 and R2 start/end positions for pa
3 months ago by Pierre Lindenbaum 161k
1
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0
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506
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Answer: Answer: How can we explain a lower reference allele frequency than alternative allele in
3 months ago by Pierre Lindenbaum 161k
1
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0
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567
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Answer: Answer: split sequences into their codons in a table
3 months ago by Pierre Lindenbaum 161k
1
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1
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512
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Answer: Answer: Find reference fasta based on M5/MD5 string
3 months ago by Pierre Lindenbaum 161k
2
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1
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525
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Answer: Answer: How to run BRIG on Ubuntu 22?
3 months ago by Pierre Lindenbaum 161k
1
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0
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288
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Answer: Answer: Is there a way to map Medgen # to OMIM # programmatically?
3 months ago by Pierre Lindenbaum 161k
1
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1
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821
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Answer: Answer: how to copy and rename files in nextflow
3 months ago by Pierre Lindenbaum 161k
0
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0
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435
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Answer: Answer: How to launch MAUVE on Ubuntu 22?
3 months ago by Pierre Lindenbaum 161k
1
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1
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583
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Answer: Answer: Help with vcf annotation
3 months ago by Pierre Lindenbaum 161k
0
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0
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300
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Answer: Answer: Efficiently Adding Missing 0/0 Sites to VCF from Whole-Genome Sequencing
3 months ago by Pierre Lindenbaum 161k
3
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0
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1.3k
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Answer: Answer: BedGraph file
3 months ago by Pierre Lindenbaum 161k
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