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Answer: Answer: Filtering VCF files based on VAF giving incorrect results
2 hours ago by Pierre Lindenbaum 161k
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162
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Answer: Answer: Duplicated sequence samtools
1 day ago by Pierre Lindenbaum 161k
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342
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Answer: Answer: joint callset and vcf sorting, unknown TAG issue
2 days ago by Pierre Lindenbaum 161k
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225
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Answer: Answer: Failed to open VCF file
3 days ago by Pierre Lindenbaum 161k
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2
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391
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Answer: Answer: Is it Possible to "Merge" data from Replicates within a VCF SNP File
2 days ago by Pierre Lindenbaum 161k
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507
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Answer: Answer: In IGV is this a heterogeneous mutation or false call?
4 days ago by Pierre Lindenbaum 161k
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638
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Answer: Answer: Filtering Multi-sample VCF file for all except one Genotype
4 days ago by Pierre Lindenbaum 161k
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434
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Answer: Answer: Different output for read length
5 days ago by Pierre Lindenbaum 161k
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2.9k
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Answer: Answer: How to solve the error 'ERROR::MATE_NOT_FOUND:Found xxx unpaired mates' when ru
5 days ago by Pierre Lindenbaum 161k
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216
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Answer: Answer: Nextflow: how to get the process work dir, within the process
6 days ago by Pierre Lindenbaum 161k
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290
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Answer: Answer: bcftools - reducing to "sites-only"?
6 days ago by Pierre Lindenbaum 161k
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244
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Answer: Answer: STRING-DB API can't find my protein but I can find it when I go to the STRING-DB
9 days ago by Pierre Lindenbaum 161k
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756
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Answer: Answer: Create a new bed file with all pairwise combinations between two other bed files
18 days ago by Pierre Lindenbaum 161k
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412
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Answer: Answer: Why gatk VariantAnnotator required bam and coverage files
19 days ago by Pierre Lindenbaum 161k
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444
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Answer: Answer: Figures are disappeared from html report of SnpEff
20 days ago by Pierre Lindenbaum 161k
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533
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Answer: Answer: Fetch table from clinvar database according to a list of rsid
20 days ago by Pierre Lindenbaum 161k
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277
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Answer: Answer: HaplotypeCaller - only SNPs
21 days ago by Pierre Lindenbaum 161k
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313
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Answer: Answer: Difference between samtools "-f 9" and "-f 11"
21 days ago by Pierre Lindenbaum 161k
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441
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Answer: Answer: How to slice a gvcf file with tabix?
22 days ago by Pierre Lindenbaum 161k
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280
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Answer: Answer: Getting the nucleotide sequence of proteins, having their UniProt IDs
22 days ago by Pierre Lindenbaum 161k
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579
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Answer: Answer: Filtering sam or bam file with maximum matching region
24 days ago by Pierre Lindenbaum 161k
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742
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Answer: Answer: Mapping cDNA sequence of a single gene to a genome not hosted at UCSC server (wi
26 days ago by Pierre Lindenbaum 161k
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1
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630
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Answer: Answer: Indexing the Reference Genome is not done in STAR
27 days ago by Pierre Lindenbaum 161k
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987
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Answer: Answer: Questions about a bug when transferring cram file to bam file
27 days ago by Pierre Lindenbaum 161k
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496
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Answer: Answer: Sheep reference genome remapping coordinates
27 days ago by Pierre Lindenbaum 161k
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347
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Answer: Answer: Bwa sampe - BGI
28 days ago by Pierre Lindenbaum 161k
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445
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Answer: Answer: Best way to deal with overlapping read names in merged BAM files
29 days ago by Pierre Lindenbaum 161k
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289
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Answer: Answer: CombineGVCFs vs. MergeVcfs
29 days ago by Pierre Lindenbaum 161k
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262
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Answer: Answer: Problem with Sniffles pipeline and SV calling help
29 days ago by Pierre Lindenbaum 161k
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2
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430
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Answer: Answer: How to download large-scale cDNA sequences from NCBI effectively ?
4 weeks ago by Pierre Lindenbaum 161k
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632
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Answer: Answer: Can you suggest a protein PDB that has two chainst but only 50 total number of a
4 weeks ago by Pierre Lindenbaum 161k
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1
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358
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Answer: Answer: Merging vcf files with bcftools ([E::get_intv] Failed to parse TBX_VCF, was wron
4 weeks ago by Pierre Lindenbaum 161k
2
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0
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267
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Answer: Answer: Finding variants within a subset of a BAM file
4 weeks ago by Pierre Lindenbaum 161k
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479
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Answer: Answer: Downsampling long-read BAM files
4 weeks ago by Pierre Lindenbaum 161k
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0
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480
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Answer: Answer: Database or Tool: Identifying Gene Regions (Exon/Intron/UTR) from Chromosome Pos
5 weeks ago by Pierre Lindenbaum 161k
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156
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Answer: Answer: BCFTools install vcfmerge.o error
5 weeks ago by Pierre Lindenbaum 161k
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231
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Answer: Answer: small RNA creating .bam from .sam file
5 weeks ago by Pierre Lindenbaum 161k
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276
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Answer: Answer: latest dbSNP (ncbi) which genome assembly
5 weeks ago by Pierre Lindenbaum 161k
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418
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Answer: Answer: How to I use prefetch (SRAtoolkit) on multiple accessions all at one?
5 weeks ago by Pierre Lindenbaum 161k
2
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2
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566
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Answer: Answer: Artificial deletion in bam
5 weeks ago by Pierre Lindenbaum 161k
2
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1
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377
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Answer: Answer: Tool to Identify Gene, Regulatory Role, and Function at Integration Sites
5 weeks ago by Pierre Lindenbaum 161k
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1
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284
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Answer: Answer: filtering VCF sites and impose whatever excluded ad missing
5 weeks ago by Pierre Lindenbaum 161k
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1
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597
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Answer: Answer: frequency of each variant per sample
5 weeks ago by Pierre Lindenbaum 161k
2
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0
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396
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Answer: Answer: Problems with Nextflow to run NanoRtax Pipeline
updated 5 weeks ago by 6.4k • written 5 weeks ago by 161k
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289
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Answer: Answer: Multiple iterations of sorted bam output files with picard SortSam
6 weeks ago by Pierre Lindenbaum 161k
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0
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255
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Answer: Answer: Using nextflow for performing quality control and trimming of reads
6 weeks ago by Pierre Lindenbaum 161k
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331
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Answer: Answer: I am unsure why my files are not being accepted in bedtools jaccard, any tips?
6 weeks ago by Pierre Lindenbaum 161k
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0
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310
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Answer: Answer: BioGRID REST - How to retrieve all the protein interactions?
6 weeks ago by Pierre Lindenbaum 161k
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1.1k
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Answer: Answer: F*up Night style events for Bioinformatics ? Comment if you're interested!
6 weeks ago by Pierre Lindenbaum 161k
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0
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371
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Answer: Answer: diffbind : killed dba.count(DBsample, bParallel=FALSE)
6 weeks ago by Pierre Lindenbaum 161k
4,701 results • Page 1 of 95
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