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answers
2
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1
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532
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Answer:
Answer: bedToBigBed error, what am I doing wrong?
6 weeks ago by
Pierre Lindenbaum
161k
0
votes
1
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424
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Answer:
Answer: Biostrings extract read
6 weeks ago by
Pierre Lindenbaum
161k
1
vote
1
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450
views
Answer:
Answer: How to add FORMAT/TAG = "." to all samples in a vcf file via bcftools?
6 weeks ago by
Pierre Lindenbaum
161k
0
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1
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338
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Answer:
Answer: error in wigToBigWig while converting mappability to bedgraph
6 weeks ago by
Pierre Lindenbaum
161k
3
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0
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245
views
Answer:
Answer: Problem with .bed file
6 weeks ago by
Pierre Lindenbaum
161k
1
vote
1
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375
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Answer:
Answer: Can't use VarScan2 to call somatic variants from my tumor/sample vcf pair
7 weeks ago by
Pierre Lindenbaum
161k
0
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0
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236
views
Answer:
Answer: converting VCF files to TSV file
7 weeks ago by
Pierre Lindenbaum
161k
0
votes
1
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279
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Answer:
Answer: Bed file filtering
7 weeks ago by
Pierre Lindenbaum
161k
1
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0
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241
views
Answer:
Answer: Query Name too long - samtools
7 weeks ago by
Pierre Lindenbaum
161k
0
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0
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256
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Answer:
Answer: Merging 2 VCF files using bcftools, however how should I update the fields accor
7 weeks ago by
Pierre Lindenbaum
161k
0
votes
0
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566
views
Answer:
Answer: i'm trying to use STAR and there is a problem...
7 weeks ago by
Pierre Lindenbaum
161k
0
votes
0
replies
659
views
Answer:
Answer: Warning: Expected at least 2 parts in FORMAT entry: ID=GP,Number=3,Type=Float,De
7 weeks ago by
Pierre Lindenbaum
161k
3
votes
1
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424
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Answer:
Answer: How to merge VCF files from multiple samples and remove individual level informa
8 weeks ago by
Pierre Lindenbaum
161k
0
votes
1
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2.5k
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Answer:
Answer: Coovar: Co-Occurring Variant Analyzer
8 weeks ago by
Pierre Lindenbaum
161k
0
votes
1
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452
views
Answer:
Answer: Issues filtering VCF file with bcftools/vcftools
8 weeks ago by
Pierre Lindenbaum
161k
2
votes
1
reply
388
views
Answer:
Answer: Uploading HiC track on UCSC browser
8 weeks ago by
Pierre Lindenbaum
161k
0
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0
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215
views
Answer:
Answer: How does one create a custom VCF file?
8 weeks ago by
Pierre Lindenbaum
161k
0
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0
replies
405
views
Answer:
Answer: blast in python
8 weeks ago by
Pierre Lindenbaum
161k
0
votes
0
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246
views
Answer:
Answer: How to get population specific SNPs from a vcf file
8 weeks ago by
Pierre Lindenbaum
161k
0
votes
1
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456
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Answer:
Answer: Selection of GTF file from gencode
9 weeks ago by
Pierre Lindenbaum
161k
2
votes
1
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361
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Answer:
Answer: GnomAD
9 weeks ago by
Pierre Lindenbaum
161k
0
votes
1
reply
476
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Answer:
Answer: CollectVariantCallingMetrics Error
9 weeks ago by
Pierre Lindenbaum
161k
1
vote
1
reply
386
views
Answer:
Answer: how to remove FORMAT field in vcf field
9 weeks ago by
Pierre Lindenbaum
161k
1
vote
0
replies
310
views
Answer:
Answer: get flanking sequences of a SNP in a vcf
9 weeks ago by
Pierre Lindenbaum
161k
1
vote
1
reply
406
views
Answer:
Answer: Would a string composed of `#CHROM`, `POS`, `REF` and `ALT` uniquely identify a
9 weeks ago by
Pierre Lindenbaum
161k
0
votes
1
reply
512
views
Answer:
Answer: Maximum returned records using epost?
10 weeks ago by
Pierre Lindenbaum
161k
0
votes
1
reply
597
views
Answer:
Answer: Bcftools view error
10 weeks ago by
Pierre Lindenbaum
161k
2
votes
0
replies
799
views
Answer:
Answer: It's my first time doing alignment and i keep getting this message, is this norm
10 weeks ago by
Pierre Lindenbaum
161k
1
vote
0
replies
651
views
Answer:
Answer: Separating bam file based on directionality / samtools view -F/-f option(s) appe
10 weeks ago by
Pierre Lindenbaum
161k
0
votes
0
replies
457
views
Answer:
Answer: genomecov -d -pc -ibam showing no coverage for every position
11 weeks ago by
Pierre Lindenbaum
161k
5
votes
0
replies
505
views
Answer:
Answer: samtools index error - "Unsorted positions on sequence" even though file is sort
11 weeks ago by
Pierre Lindenbaum
161k
2
votes
1
reply
510
views
Answer:
Answer: Extract SNPs present in mutants
11 weeks ago by
Pierre Lindenbaum
161k
3
votes
1
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347
views
Answer:
Answer: How to exclude reads from a fastq file, using a list of read names?
12 weeks ago by
Pierre Lindenbaum
161k
2
votes
1
reply
660
views
Answer:
Answer: Split large deletion D in CIGAR string and filtering reads
12 weeks ago by
Pierre Lindenbaum
161k
4
votes
1
reply
359
views
Answer:
Answer: line 1: syntax error near unexpected token `Rsubread
3 months ago by
Pierre Lindenbaum
161k
3
votes
0
replies
579
views
Answer:
Answer: Creating a csv in a specific format from FASTQ file names
3 months ago by
Pierre Lindenbaum
161k
0
votes
1
reply
565
views
Answer:
Answer: filter reads with >90% match
3 months ago by
Pierre Lindenbaum
161k
0
votes
1
reply
922
views
Answer:
Answer: How to save the results of norm to txt
3 months ago by
Pierre Lindenbaum
161k
1
vote
1
reply
916
views
Answer:
Answer: nfcore/fetchngs : Error: fasterq-dump cannot create this file
3 months ago by
Pierre Lindenbaum
161k
0
votes
0
replies
242
views
Answer:
Answer: Importing read pairs from BAM with specific R1 and R2 start/end positions for pa
3 months ago by
Pierre Lindenbaum
161k
1
vote
0
replies
510
views
Answer:
Answer: How can we explain a lower reference allele frequency than alternative allele in
3 months ago by
Pierre Lindenbaum
161k
1
vote
0
replies
575
views
Answer:
Answer: split sequences into their codons in a table
3 months ago by
Pierre Lindenbaum
161k
1
vote
1
reply
526
views
Answer:
Answer: Find reference fasta based on M5/MD5 string
3 months ago by
Pierre Lindenbaum
161k
2
votes
1
reply
541
views
Answer:
Answer: How to run BRIG on Ubuntu 22?
3 months ago by
Pierre Lindenbaum
161k
1
vote
0
replies
298
views
Answer:
Answer: Is there a way to map Medgen # to OMIM # programmatically?
3 months ago by
Pierre Lindenbaum
161k
1
vote
1
reply
843
views
Answer:
Answer: how to copy and rename files in nextflow
3 months ago by
Pierre Lindenbaum
161k
0
votes
0
replies
443
views
Answer:
Answer: How to launch MAUVE on Ubuntu 22?
3 months ago by
Pierre Lindenbaum
161k
1
vote
1
reply
596
views
Answer:
Answer: Help with vcf annotation
3 months ago by
Pierre Lindenbaum
161k
0
votes
0
replies
306
views
Answer:
Answer: Efficiently Adding Missing 0/0 Sites to VCF from Whole-Genome Sequencing
3 months ago by
Pierre Lindenbaum
161k
3
votes
0
replies
1.3k
views
Answer:
Answer: BedGraph file
4 months ago by
Pierre Lindenbaum
161k
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