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1
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361
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Answer:
Answer: Merging vcf files with bcftools ([E::get_intv] Failed to parse TBX_VCF, was wron
5 weeks ago by
Pierre Lindenbaum
161k
0
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1
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323
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Comment:
Comment: True variants selection
5 weeks ago by
Pierre Lindenbaum
161k
0
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0
replies
193
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Comment:
Comment: How to reveal real AF of variant if duplicates can't be removed (such as in ampl
5 weeks ago by
Pierre Lindenbaum
161k
0
votes
0
replies
200
views
Comment:
Comment: Extract Di-nucleotide/Tri-Nucleotide substitution frequencies from MSA/VCF file
5 weeks ago by
Pierre Lindenbaum
161k
0
votes
1
reply
271
views
Comment:
Comment: Finding variants within a subset of a BAM file
5 weeks ago by
Pierre Lindenbaum
161k
2
votes
0
replies
271
views
Answer:
Answer: Finding variants within a subset of a BAM file
5 weeks ago by
Pierre Lindenbaum
161k
0
votes
1
reply
270
views
Comment:
Comment: Help with generating annotation database for dog genome to use in ANNOVAR for v
5 weeks ago by
Pierre Lindenbaum
161k
0
votes
1
reply
238
views
Comment:
Comment: Can't figure out plink --sample-diff
5 weeks ago by
Pierre Lindenbaum
161k
0
votes
1
reply
485
views
Answer:
Answer: Downsampling long-read BAM files
5 weeks ago by
Pierre Lindenbaum
161k
1
vote
0
replies
483
views
Answer:
Answer: Database or Tool: Identifying Gene Regions (Exon/Intron/UTR) from Chromosome Pos
5 weeks ago by
Pierre Lindenbaum
161k
0
votes
1
reply
483
views
Comment:
Comment: Database or Tool: Identifying Gene Regions (Exon/Intron/UTR) from Chromosome Pos
5 weeks ago by
Pierre Lindenbaum
161k
0
votes
1
reply
719
views
Comment:
Comment: Why are the basics so complicated? Basic coverage filtering for VCF files
5 weeks ago by
Pierre Lindenbaum
161k
0
votes
0
replies
338
views
Comment:
Comment: Using GPUs in snakemake
5 weeks ago by
Pierre Lindenbaum
161k
1
vote
0
replies
338
views
Comment:
Comment: Using GPUs in snakemake
5 weeks ago by
Pierre Lindenbaum
161k
3
votes
0
replies
327
views
Comment:
Comment: Ubuntu storage space is decreasing automatically
5 weeks ago by
Pierre Lindenbaum
161k
1
vote
0
replies
327
views
Comment:
Comment: Ubuntu storage space is decreasing automatically
5 weeks ago by
Pierre Lindenbaum
161k
0
votes
0
replies
156
views
Answer:
Answer: BCFTools install vcfmerge.o error
5 weeks ago by
Pierre Lindenbaum
161k
0
votes
1
reply
374
views
Comment:
Comment: What is the samtools flag used in bamPEFragment?
5 weeks ago by
Pierre Lindenbaum
161k
0
votes
0
replies
233
views
Answer:
Answer: small RNA creating .bam from .sam file
5 weeks ago by
Pierre Lindenbaum
161k
1
vote
1
reply
820
views
Comment:
Comment: bash script
5 weeks ago by
Pierre Lindenbaum
161k
1
vote
1
reply
278
views
Answer:
Answer: latest dbSNP (ncbi) which genome assembly
5 weeks ago by
Pierre Lindenbaum
161k
0
votes
0
replies
184
views
Comment:
Comment: How do I run fastq-dump on multiple prefetched files at once?
5 weeks ago by
Pierre Lindenbaum
161k
0
votes
0
replies
292
views
Comment:
Comment: Regions not clear in VCF
5 weeks ago by
Pierre Lindenbaum
161k
0
votes
0
replies
292
views
Comment:
Comment: Regions not clear in VCF
5 weeks ago by
Pierre Lindenbaum
161k
1
vote
0
replies
421
views
Comment:
Comment: How to I use prefetch (SRAtoolkit) on multiple accessions all at one?
5 weeks ago by
Pierre Lindenbaum
161k
1
vote
1
reply
421
views
Answer:
Answer: How to I use prefetch (SRAtoolkit) on multiple accessions all at one?
5 weeks ago by
Pierre Lindenbaum
161k
0
votes
0
replies
380
views
Comment:
Comment: Help with finding Genomic coordinates and exon they belong to
5 weeks ago by
Pierre Lindenbaum
161k
0
votes
0
replies
380
views
Comment:
Comment: Help with finding Genomic coordinates and exon they belong to
5 weeks ago by
Pierre Lindenbaum
161k
0
votes
0
replies
570
views
Comment:
Comment: Artificial deletion in bam
5 weeks ago by
Pierre Lindenbaum
161k
0
votes
1
reply
633
views
Comment:
Comment: seg fault, core dumped with manta 1.6.0
5 weeks ago by
Pierre Lindenbaum
161k
0
votes
0
replies
669
views
Comment:
Comment: The bioinformatics paper reappears, but the results are significantly different
6 weeks ago by
Pierre Lindenbaum
161k
0
votes
0
replies
570
views
Comment:
Comment: Artificial deletion in bam
6 weeks ago by
Pierre Lindenbaum
161k
2
votes
2
replies
570
views
Answer:
Answer: Artificial deletion in bam
6 weeks ago by
Pierre Lindenbaum
161k
1
vote
0
replies
266
views
Comment:
Comment: Trying to write bwa mem -> samtools view -> samtools sort loop
6 weeks ago by
Pierre Lindenbaum
161k
0
votes
0
replies
378
views
Comment:
Comment: Tool to Identify Gene, Regulatory Role, and Function at Integration Sites
6 weeks ago by
Pierre Lindenbaum
161k
0
votes
1
reply
370
views
Comment:
Comment: Incongruencies in GT assignment by Freebayes
6 weeks ago by
Pierre Lindenbaum
161k
0
votes
1
reply
378
views
Comment:
Comment: Tool to Identify Gene, Regulatory Role, and Function at Integration Sites
6 weeks ago by
Pierre Lindenbaum
161k
0
votes
1
reply
370
views
Comment:
Comment: Incongruencies in GT assignment by Freebayes
6 weeks ago by
Pierre Lindenbaum
161k
0
votes
1
reply
619
views
Comment:
Comment: FreeBayes encountered a sudden error
6 weeks ago by
Pierre Lindenbaum
161k
0
votes
0
replies
603
views
Comment:
Comment: frequency of each variant per sample
6 weeks ago by
Pierre Lindenbaum
161k
0
votes
1
reply
619
views
Comment:
Comment: FreeBayes encountered a sudden error
6 weeks ago by
Pierre Lindenbaum
161k
2
votes
1
reply
378
views
Answer:
Answer: Tool to Identify Gene, Regulatory Role, and Function at Integration Sites
6 weeks ago by
Pierre Lindenbaum
161k
0
votes
0
replies
285
views
Comment:
Comment: filtering VCF sites and impose whatever excluded ad missing
6 weeks ago by
Pierre Lindenbaum
161k
2
votes
1
reply
285
views
Answer:
Answer: filtering VCF sites and impose whatever excluded ad missing
6 weeks ago by
Pierre Lindenbaum
161k
0
votes
1
reply
603
views
Comment:
Comment: frequency of each variant per sample
6 weeks ago by
Pierre Lindenbaum
161k
1
vote
1
reply
603
views
Answer:
Answer: frequency of each variant per sample
6 weeks ago by
Pierre Lindenbaum
161k
0
votes
0
replies
249
views
Comment:
Comment: Data table for LOEUF loss-of-function observed/expected upper bound fraction
6 weeks ago by
Pierre Lindenbaum
161k
1
vote
0
replies
278
views
Comment:
Comment: R/python script to extract Subcellular locations (Compartments) from Genecards?
6 weeks ago by
Pierre Lindenbaum
161k
0
votes
0
replies
261
views
Comment:
Comment: Uniprotkb's Disease & Variants section out-of-date
6 weeks ago by
Pierre Lindenbaum
161k
1
vote
0
replies
207
views
Comment:
Comment: R/Python script to collect allele frequency for batch of SNPs in gnomAD database
6 weeks ago by
Pierre Lindenbaum
161k
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