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Answer: Answer: Tools/pipeline for analysis of smart-seq3 data
15 days ago by dsull ★ 3.7k
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291
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Answer: Answer: Can I add TPM values of Isoforms of the same gene to get total gene expression?
17 days ago by dsull ★ 3.7k
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0
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1.2k
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Comment: Comment: What does the fragment length (-l) argument in Kallisto actually do?
21 days ago by dsull ★ 3.7k
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0
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1.2k
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Comment: Comment: What does the fragment length (-l) argument in Kallisto actually do?
21 days ago by dsull ★ 3.7k
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0
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524
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Comment: Comment: Is it possible to convert transcript-level to gene-level dataset to use it in DE
22 days ago by dsull ★ 3.7k
1
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1
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524
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Answer: Answer: Is it possible to convert transcript-level to gene-level dataset to use it in DE
22 days ago by dsull ★ 3.7k
2
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0
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364
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Answer: Answer: Circular deBuijn Graph
5 weeks ago by dsull ★ 3.7k
1
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0
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752
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Comment: Comment: How to get transcriptome reference?
5 weeks ago by dsull ★ 3.7k
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0
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752
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Answer: Answer: How to get transcriptome reference?
5 weeks ago by dsull ★ 3.7k
1
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1
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1.2k
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Comment: Comment: downloading raw scRNA seq data from NCBI
6 weeks ago by dsull ★ 3.7k
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0
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1.2k
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Comment: Comment: downloading raw scRNA seq data from NCBI
6 weeks ago by dsull ★ 3.7k
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0
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905
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Comment: Comment: A Computer Scientist who wants to start Bioinformatics
6 weeks ago by dsull ★ 3.7k
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0
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634
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Comment: Comment: is there any tool for SRA metadata analysis?
6 weeks ago by dsull ★ 3.7k
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1
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682
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Comment: Comment: Issues with chromosome file in kallisto
6 weeks ago by dsull ★ 3.7k
1
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1
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450
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Answer: Answer: Does the bootstrap in kallisto affect the BAM files?
6 weeks ago by dsull ★ 3.7k
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1
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682
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Comment: Comment: Issues with chromosome file in kallisto
6 weeks ago by dsull ★ 3.7k
1
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1
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634
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Comment: Comment: is there any tool for SRA metadata analysis?
6 weeks ago by dsull ★ 3.7k
2
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1
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362
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Answer: Answer: Are ther any bulk RNAseq pipeline recommend which including the downstream funct
7 weeks ago by dsull ★ 3.7k
1
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0
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241
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Comment: Comment: Sleuth analysis with only using Kallisto abundance.tsv files no HDF5 files
7 weeks ago by dsull ★ 3.7k
0
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0
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556
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Comment: Comment: FPKM file differentilly gene anaylsis
7 weeks ago by dsull ★ 3.7k
2
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1
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240
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Answer: Answer: How to use Sleuth for Kallisto results in one directory?
8 weeks ago by dsull ★ 3.7k
2
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1
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543
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Comment: Comment: Building index with kallisto, keeps getting killed.
8 weeks ago by dsull ★ 3.7k
2
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1
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543
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Answer: Answer: Building index with kallisto, keeps getting killed.
8 weeks ago by dsull ★ 3.7k
1
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1
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556
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Answer: Answer: FPKM file differentilly gene anaylsis
8 weeks ago by dsull ★ 3.7k
1
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0
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357
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Comment: Comment: Random forest with DE genes
8 weeks ago by dsull ★ 3.7k
2
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1
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357
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Answer: Answer: Random forest with DE genes
8 weeks ago by dsull ★ 3.7k
2
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0
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208
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Answer: Answer: Understanding how-are-we-stranded-here and salmon parameters
8 weeks ago by dsull ★ 3.7k
1
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1
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685
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Comment: Comment: Can't convert SRA to FASTQ with fasterq-dump. fasterq-dump was killed (signal 9
9 weeks ago by dsull ★ 3.7k
0
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1
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342
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Comment: Comment: Tools for strand direction detection RNA-Seq
11 weeks ago by dsull ★ 3.7k
2
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0
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342
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Comment: Comment: Tools for strand direction detection RNA-Seq
11 weeks ago by dsull ★ 3.7k
0
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1
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1.2k
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Comment: Comment: What does the fragment length (-l) argument in Kallisto actually do?
12 weeks ago by dsull ★ 3.7k
0
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0
replies
1.2k
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Comment: Comment: What does the fragment length (-l) argument in Kallisto actually do?
12 weeks ago by dsull ★ 3.7k
0
votes
0
replies
1.2k
views
Comment: Comment: What does the fragment length (-l) argument in Kallisto actually do?
12 weeks ago by dsull ★ 3.7k
1
vote
1
reply
1.2k
views
Comment: Comment: What does the fragment length (-l) argument in Kallisto actually do?
12 weeks ago by dsull ★ 3.7k
1
vote
1
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270
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Comment: Comment: Should I skip trimming, and do deseq2 directly if fastqc only shows adapters.
12 weeks ago by dsull ★ 3.7k
0
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0
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856
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Comment: Comment: How to choose parameters for kallisto single end mode?
3 months ago by dsull ★ 3.7k
0
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0
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856
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Comment: Comment: How to choose parameters for kallisto single end mode?
3 months ago by dsull ★ 3.7k
1
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1
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856
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Comment: Comment: How to choose parameters for kallisto single end mode?
3 months ago by dsull ★ 3.7k
1
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0
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503
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Comment: Comment: Kallisto on identical transcript
4 months ago by dsull ★ 3.7k
1
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1
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503
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Answer: Answer: Kallisto on identical transcript
4 months ago by dsull ★ 3.7k
1
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1
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281
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Comment: Comment: Can you use kallisto to process GRO-seq data?
4 months ago by dsull ★ 3.7k
0
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0
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1.3k
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Comment: Comment: Kallisto bustools index
4 months ago by dsull ★ 3.7k
0
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0
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1.3k
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Comment: Comment: Kallisto bustools index
4 months ago by dsull ★ 3.7k
0
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1
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275
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Comment: Comment: Normalize and perform differential expression analysis for two sets of transcrip
4 months ago by dsull ★ 3.7k
2
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1
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658
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Answer: Answer: What is the best practice for the analysis of single-cell RNA-seq of mouse and h
5 months ago by dsull ★ 3.7k
2
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0
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442
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Answer: Answer: Reference that justifies/explains an FPKM cutoff
5 months ago by dsull ★ 3.7k
1
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0
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390
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Comment: Comment: Statistical exams in case of low replicate number in RNAseq analysis
5 months ago by dsull ★ 3.7k
2
votes
0
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821
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Comment: Comment: How to interpret a tSNE or UMAP plot to get biological conclusions ?
5 months ago by dsull ★ 3.7k
1
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1
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821
views
Comment: Comment: How to interpret a tSNE or UMAP plot to get biological conclusions ?
5 months ago by dsull ★ 3.7k
1
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1
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821
views
Answer: Answer: How to interpret a tSNE or UMAP plot to get biological conclusions ?
5 months ago by dsull ★ 3.7k
374 results • Page 1 of 8
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