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Answer: Answer: Is there any tool that can search for a pattern (while allowing mismatch) in fas
2 days ago by dsull ★ 6.4k
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764
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Comment: Comment: How to improve a bioinformatics study and paper so that it is not considered "to
3 days ago by dsull ★ 6.4k
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764
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Answer: Answer: How to improve a bioinformatics study and paper so that it is not considered "to
3 days ago by dsull ★ 6.4k
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240
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Answer: Answer: Fragment size of published single end RNAseq data
7 days ago by dsull ★ 6.4k
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503
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Comment: Comment: How do decide if a processed scRNA-seq data is read counts or UMI format ?
8 days ago by dsull ★ 6.4k
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Answer: Answer: kb count -x parameter - what are the three parts?
10 days ago by dsull ★ 6.4k
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482
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Comment: Comment: 10X #3' RNA seq - How is strandedness determined?
11 days ago by dsull ★ 6.4k
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245
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Answer: Answer: I am getting an error with Kallisto Bustools wrapper (kb) command to create an i
13 days ago by dsull ★ 6.4k
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345
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Answer: Answer: Is the 10X multiome chemistry most similar similar to 10XV1, 10XV2, or 10XV3?
13 days ago by dsull ★ 6.4k
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994
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Answer: Answer: RNA STAR and trimming
16 days ago by dsull ★ 6.4k
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674
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Answer: Answer: Conversion of Gene Name to Ensembl ID
17 days ago by dsull ★ 6.4k
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994
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Comment: Comment: RNA STAR and trimming
18 days ago by dsull ★ 6.4k
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466
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Comment: Comment: DESeq2 for DE analysis of proteins
18 days ago by dsull ★ 6.4k
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466
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Comment: Comment: DESeq2 for DE analysis of proteins
19 days ago by dsull ★ 6.4k
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466
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Answer: Answer: DESeq2 for DE analysis of proteins
19 days ago by dsull ★ 6.4k
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373
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Comment: Comment: gene ids do not have corresponding valid gene names kallisto bus tools
20 days ago by dsull ★ 6.4k
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994
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Comment: Comment: RNA STAR and trimming
21 days ago by dsull ★ 6.4k
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373
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Answer: Answer: gene ids do not have corresponding valid gene names kallisto bus tools
21 days ago by dsull ★ 6.4k
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361
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Comment: Comment: indexing the drosophila genome for kallisto
22 days ago by dsull ★ 6.4k
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361
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Answer: Answer: indexing the drosophila genome for kallisto
22 days ago by dsull ★ 6.4k
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281
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Answer: Answer: STAR Index error
23 days ago by dsull ★ 6.4k
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2.6k
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Comment: Comment: Why it is not use UMIs for RNA-seq?
23 days ago by dsull ★ 6.4k
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282
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Comment: Comment: Changing existing identifiers in RNASeq data to gene names
4 weeks ago by dsull ★ 6.4k
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1.5k
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Comment: Comment: What Are The Most Influential Bioinformatics/Computational Biology Papers Of 202
4 weeks ago by dsull ★ 6.4k
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404
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Comment: Comment: filter reads based on mapped length
5 weeks ago by dsull ★ 6.4k
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444
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Comment: Comment: Stuck on how to run STARsolo on paired cDNA RNA-Seq FASTQ files
6 weeks ago by dsull ★ 6.4k
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444
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Comment: Comment: Stuck on how to run STARsolo on paired cDNA RNA-Seq FASTQ files
6 weeks ago by dsull ★ 6.4k
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461
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Answer: Answer: Best way to create a custom reference for CellRanger when using a transgenic mou
6 weeks ago by dsull ★ 6.4k
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448
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Comment: Comment: Why am I getting such a big difference in alignment rates in kallisto?
6 weeks ago by dsull ★ 6.4k
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267
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Answer: Answer: What does the name of a read mean? How to find its location in genome viewer?
6 weeks ago by dsull ★ 6.4k
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361
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Comment: Comment: Detecting a virus in RNA-Seq Data
6 weeks ago by dsull ★ 6.4k
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362
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Comment: Comment: Can I go from kallisto results to SEURAT directly
6 weeks ago by dsull ★ 6.4k
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253
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Comment: Comment: Hybrid ScRNA Seq genome (transcriptome
6 weeks ago by dsull ★ 6.4k
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331
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Comment: Comment: single nucleus RNA seq processing pipeline questions
7 weeks ago by dsull ★ 6.4k
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393
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Comment: Comment: Differential gene expression
7 weeks ago by dsull ★ 6.4k
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485
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Comment: Comment: Basic question about lncRNA identification
7 weeks ago by dsull ★ 6.4k
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407
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Comment: Comment: FASTQ header correction to remove .1 and .2 from paired end - SRA files
7 weeks ago by dsull ★ 6.4k
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308
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Comment: Comment: Best Kits for RNA extraction from different fish tissue for annotation and gene
7 weeks ago by dsull ★ 6.4k
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446
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Comment: Comment: Are there instutions that allow to use their hpc without charge?
7 weeks ago by dsull ★ 6.4k
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308
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Comment: Comment: Best Kits for RNA extraction from different fish tissue for annotation and gene
7 weeks ago by dsull ★ 6.4k
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8.1k
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Comment: Comment: log2 fold change in RNA-seq analysis
9 weeks ago by dsull ★ 6.4k
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1.4k
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Comment: Comment: High Malat-1 expression in single cell data
11 weeks ago by dsull ★ 6.4k
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1
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438
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Answer: Answer: How to compute TPM normalized values for TCGA miRNA data?
11 weeks ago by dsull ★ 6.4k
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1.4k
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Comment: Comment: High Malat-1 expression in single cell data
12 weeks ago by dsull ★ 6.4k
1
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596
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Comment: Comment: How does gene length effect the number of reads mapped
12 weeks ago by dsull ★ 6.4k
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1.4k
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Comment: Comment: High Malat-1 expression in single cell data
12 weeks ago by dsull ★ 6.4k
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596
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Comment: Comment: How does gene length effect the number of reads mapped
12 weeks ago by dsull ★ 6.4k
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385
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Answer: Answer: RNA-seq data for deep learning classification
12 weeks ago by dsull ★ 6.4k
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801
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Comment: Comment: What purposes can TPM values be used for?
12 weeks ago by dsull ★ 6.4k
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706
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Comment: Comment: How should I make kallisto indexes?
12 weeks ago by dsull ★ 6.4k
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