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2
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1
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1.3k
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Answer: Answer: How to use Sleuth for Kallisto results in one directory?
2.9 years ago by dsull ★ 7.8k
2
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1
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4.1k
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Comment: Comment: Building index with kallisto, keeps getting killed.
2.9 years ago by dsull ★ 7.8k
2
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1
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4.1k
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Answer: Answer: Building index with kallisto, keeps getting killed.
2.9 years ago by dsull ★ 7.8k
1
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1
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2.2k
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Answer: Answer: FPKM file differentilly gene anaylsis
2.9 years ago by dsull ★ 7.8k
1
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0
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1.4k
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Comment: Comment: Random forest with DE genes
2.9 years ago by dsull ★ 7.8k
2
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1
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1.4k
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Answer: Answer: Random forest with DE genes
2.9 years ago by dsull ★ 7.8k
2
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0
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904
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Answer: Answer: Understanding how-are-we-stranded-here and salmon parameters
2.9 years ago by dsull ★ 7.8k
1
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1
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3.5k
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Comment: Comment: Can't convert SRA to FASTQ with fasterq-dump. fasterq-dump was killed (signal 9
2.9 years ago by dsull ★ 7.8k
0
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1
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1.3k
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Comment: Comment: Tools for strand direction detection RNA-Seq
3.0 years ago by dsull ★ 7.8k
2
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0
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1.3k
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Comment: Comment: Tools for strand direction detection RNA-Seq
3.0 years ago by dsull ★ 7.8k
0
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1
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5.8k
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Comment: Comment: What does the fragment length (-l) argument in Kallisto actually do?
3.0 years ago by dsull ★ 7.8k
0
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0
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5.8k
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Comment: Comment: What does the fragment length (-l) argument in Kallisto actually do?
3.0 years ago by dsull ★ 7.8k
0
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0
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5.8k
views
Comment: Comment: What does the fragment length (-l) argument in Kallisto actually do?
3.0 years ago by dsull ★ 7.8k
1
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1
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5.8k
views
Comment: Comment: What does the fragment length (-l) argument in Kallisto actually do?
3.0 years ago by dsull ★ 7.8k
1
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1
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1.5k
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Comment: Comment: Should I skip trimming, and do deseq2 directly if fastqc only shows adapters.
3.0 years ago by dsull ★ 7.8k
0
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0
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5.5k
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Comment: Comment: How to choose parameters for kallisto single end mode?
3.0 years ago by dsull ★ 7.8k
0
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0
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5.5k
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Comment: Comment: How to choose parameters for kallisto single end mode?
3.0 years ago by dsull ★ 7.8k
1
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1
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5.5k
views
Comment: Comment: How to choose parameters for kallisto single end mode?
3.0 years ago by dsull ★ 7.8k
1
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0
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2.1k
views
Comment: Comment: Kallisto on identical transcript
3.1 years ago by dsull ★ 7.8k
1
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1
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2.1k
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Answer: Answer: Kallisto on identical transcript
3.1 years ago by dsull ★ 7.8k
1
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1
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893
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Comment: Comment: Can you use kallisto to process GRO-seq data?
3.1 years ago by dsull ★ 7.8k
0
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0
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3.6k
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Comment: Comment: Kallisto bustools index
3.1 years ago by dsull ★ 7.8k
0
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0
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3.6k
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Comment: Comment: Kallisto bustools index
3.1 years ago by dsull ★ 7.8k
0
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1
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1.1k
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Comment: Comment: Normalize and perform differential expression analysis for two sets of transcrip
3.2 years ago by dsull ★ 7.8k
2
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1
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3.5k
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Answer: Answer: What is the best practice for the analysis of single-cell RNA-seq of mouse and h
3.2 years ago by dsull ★ 7.8k
2
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0
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1.3k
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Answer: Answer: Reference that justifies/explains an FPKM cutoff
3.2 years ago by dsull ★ 7.8k
1
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0
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1.3k
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Comment: Comment: Statistical exams in case of low replicate number in RNAseq analysis
3.2 years ago by dsull ★ 7.8k
2
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0
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3.7k
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Comment: Comment: How to interpret a tSNE or UMAP plot to get biological conclusions ?
3.2 years ago by dsull ★ 7.8k
1
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1
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3.7k
views
Comment: Comment: How to interpret a tSNE or UMAP plot to get biological conclusions ?
3.2 years ago by dsull ★ 7.8k
1
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1
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3.7k
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Answer: Answer: How to interpret a tSNE or UMAP plot to get biological conclusions ?
3.2 years ago by dsull ★ 7.8k
0
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0
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4.5k
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Comment: Comment: Understanding TCGA Pancancer data from cBioPortal
3.2 years ago by dsull ★ 7.8k
0
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0
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1.7k
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Comment: Comment: HT-seq CPTAC,RNA-seq
3.3 years ago by dsull ★ 7.8k
0
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1
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1.7k
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Comment: Comment: HT-seq CPTAC,RNA-seq
3.3 years ago by dsull ★ 7.8k
0
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1
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1.7k
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Comment: Comment: HT-seq CPTAC,RNA-seq
3.3 years ago by dsull ★ 7.8k
2
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0
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1.1k
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Comment: Comment: Why do I get a positive gene expression with qPCR for one my genes but in with w
3.3 years ago by dsull ★ 7.8k
3
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0
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1.0k
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Answer: Answer: What are the advantages of GO and KEGG? What should be as next step?
3.3 years ago by dsull ★ 7.8k
1
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1
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3.6k
views
Comment: Comment: About normalization of the datasets from Harmonized TCGA data
3.3 years ago by dsull ★ 7.8k
1
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1
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3.6k
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Comment: Comment: About normalization of the datasets from Harmonized TCGA data
3.3 years ago by dsull ★ 7.8k
2
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0
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2.8k
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Comment: Comment: 96% of reads aligned to the genome, but only 40% to the transcriptome?
3.3 years ago by dsull ★ 7.8k
0
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0
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871
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Comment: Comment: problem in cyverse kallisto & sleuth apps
3.3 years ago by dsull ★ 7.8k
1
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1
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3.9k
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Answer: Answer: How to use kallisto correctly?
3.3 years ago by dsull ★ 7.8k
0
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0
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1.5k
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Comment: Comment: How to improve alignment of scRNA-seq data in using CellRanger
3.3 years ago by dsull ★ 7.8k
0
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0
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763
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Comment: Comment: Will Kallisto generate different result based on the same fastq files?
3.3 years ago by dsull ★ 7.8k
1
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0
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1.6k
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Answer: Answer: Top/best RNAseq workflow including anlaysis results for function annotation
3.3 years ago by dsull ★ 7.8k
0
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0
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1.5k
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Answer: Answer: What are the data values in qRT-PCR for statistical testing? dCT? or 2^-dCT?
3.4 years ago by dsull ★ 7.8k
1
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0
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3.3k
views
Comment: Comment: Issues with newer Kallisto versions (aka 0.46.1)
3.4 years ago by dsull ★ 7.8k
0
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0
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3.3k
views
Comment: Comment: Issues with newer Kallisto versions (aka 0.46.1)
3.4 years ago by dsull ★ 7.8k
1
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0
replies
977
views
Comment: Comment: Best Pipeline for De novo transcriptome SC-RNAseq
3.4 years ago by dsull ★ 7.8k
0
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1
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3.3k
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Comment: Comment: Issues with newer Kallisto versions (aka 0.46.1)
3.4 years ago by dsull ★ 7.8k
2
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1
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3.3k
views
Comment: Comment: Issues with newer Kallisto versions (aka 0.46.1)
3.4 years ago by dsull ★ 7.8k
804 results • Page 10 of 17
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