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Comment: Comment: Kallisto alignment with HPC (SLURM)
24 days ago by dsull ★ 7.3k
2
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686
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Comment: Comment: What is the current state of the beef against UMAP/tSNE in the context of sc tra
27 days ago by dsull ★ 7.3k
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1
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720
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Comment: Comment: Manual conversion of VCF genotypes to nucleotide sequence
4 weeks ago by dsull ★ 7.3k
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0
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1.0k
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Comment: Comment: Which zUMIs output to use for differential gene expression?
6 weeks ago by dsull ★ 7.3k
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1
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791
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Comment: Comment: Snakemake config errors
7 weeks ago by dsull ★ 7.3k
2
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0
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456
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Comment: Comment: How to handle paired and unpaired reads in RNAseq pipeline
7 weeks ago by dsull ★ 7.3k
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1
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791
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Comment: Comment: Snakemake config errors
7 weeks ago by dsull ★ 7.3k
1
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0
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946
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Comment: Comment: Preparation needed to get into Bioinformatic field
7 weeks ago by dsull ★ 7.3k
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0
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516
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Comment: Comment: How to do allele specific expression analysis (ASE)
9 weeks ago by dsull ★ 7.3k
2
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0
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1.4k
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Comment: Comment: STAR aligner - Is this still maintained?
9 weeks ago by dsull ★ 7.3k
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0
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716
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Comment: Comment: Unexpected spliced/unspliced percentages in scRNA-seq data
10 weeks ago by dsull ★ 7.3k
3
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1
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716
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Comment: Comment: Unexpected spliced/unspliced percentages in scRNA-seq data
10 weeks ago by dsull ★ 7.3k
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2
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716
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Comment: Comment: Unexpected spliced/unspliced percentages in scRNA-seq data
10 weeks ago by dsull ★ 7.3k
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0
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793
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Comment: Comment: Sample-level demultiplex raw FASTQ file
11 weeks ago by dsull ★ 7.3k
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2.7k
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Comment: Comment: New Macbook M4 laptops (Pro vs Max)
12 weeks ago by dsull ★ 7.3k
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2.7k
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Comment: Comment: New Macbook M4 laptops (Pro vs Max)
12 weeks ago by dsull ★ 7.3k
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1
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2.7k
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Comment: Comment: New Macbook M4 laptops (Pro vs Max)
12 weeks ago by dsull ★ 7.3k
1
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0
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2.7k
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Comment: Comment: New Macbook M4 laptops (Pro vs Max)
12 weeks ago by dsull ★ 7.3k
0
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0
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1.1k
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Comment: Comment: Transcript coverage 3' bias. Is it really that determining?
3 months ago by dsull ★ 7.3k
0
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1
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1.1k
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Comment: Comment: Transcript coverage 3' bias. Is it really that determining?
3 months ago by dsull ★ 7.3k
1
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0
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877
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Comment: Comment: Understanding STARsolo --soloStrand values and 10X scRNA-seq library structure
3 months ago by dsull ★ 7.3k
0
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1
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877
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Comment: Comment: Understanding STARsolo --soloStrand values and 10X scRNA-seq library structure
3 months ago by dsull ★ 7.3k
0
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0
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1.4k
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Comment: Comment: Convert RNASeq V2 data in cBioPortal having RSEM normalized results to TPM value
3 months ago by dsull ★ 7.3k
0
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1
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1.4k
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Comment: Comment: Convert RNASeq V2 data in cBioPortal having RSEM normalized results to TPM value
3 months ago by dsull ★ 7.3k
1
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0
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1.1k
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Comment: Comment: DE analysis from kallisto estimated counts (only)
4 months ago by dsull ★ 7.3k
0
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1
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1.1k
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Comment: Comment: DE analysis from kallisto estimated counts (only)
4 months ago by dsull ★ 7.3k
0
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1
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1.1k
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Comment: Comment: DE analysis from kallisto estimated counts (only)
4 months ago by dsull ★ 7.3k
0
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0
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506
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Comment: Comment: How to perform corrected Cell Barcode/UMI calling with an externally sorted BAM?
4 months ago by dsull ★ 7.3k
1
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0
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740
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Comment: Comment: Pre-pseudoalignment preprocessing
4 months ago by dsull ★ 7.3k
1
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1
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694
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Comment: Comment: alignment to human transcriptome with Bowtie2
5 months ago by dsull ★ 7.3k
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0
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1.1k
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Comment: Comment: How the field has changed in the last 5 years, and 25 years (up to 2024)
5 months ago by dsull ★ 7.3k
1
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0
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976
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Comment: Comment: How to handle RNA seq data with unbalanced % rRNA by group?
5 months ago by dsull ★ 7.3k
0
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1
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1.6k
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Comment: Comment: How to determine whether it is 10x data
5 months ago by dsull ★ 7.3k
0
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0
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690
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Comment: Comment: How to count the number and proportion of different barcode combinations in DNA
updated 5 months ago by 45k • written 5 months ago by ★ 7.3k
1
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0
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514
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Comment: Comment: Help With Sleuth
5 months ago by dsull ★ 7.3k
0
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0
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845
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Comment: Comment: ncRNA, pseudogenes and lncRNA genes in highly variable features ( scRNA)
5 months ago by dsull ★ 7.3k
0
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1
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845
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Comment: Comment: ncRNA, pseudogenes and lncRNA genes in highly variable features ( scRNA)
6 months ago by dsull ★ 7.3k
0
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1
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845
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Comment: Comment: ncRNA, pseudogenes and lncRNA genes in highly variable features ( scRNA)
6 months ago by dsull ★ 7.3k
1
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1
reply
760
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Comment: Comment: Problem while using Tophat 2.1.0 to search gene fusions
6 months ago by dsull ★ 7.3k
0
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0
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1.2k
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Comment: Comment: What should I do if death cell counts and types biologically important in my sin
6 months ago by dsull ★ 7.3k
0
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0
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987
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Comment: Comment: Chromium 5’ Next GEM single cell STARsolo
6 months ago by dsull ★ 7.3k
0
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0
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1.5k
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Comment: Comment: Kallisto: to scaledTPM or not to scaledTPM
6 months ago by dsull ★ 7.3k
0
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0
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987
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Comment: Comment: Chromium 5’ Next GEM single cell STARsolo
6 months ago by dsull ★ 7.3k
0
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1
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1.5k
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Comment: Comment: Kallisto: to scaledTPM or not to scaledTPM
6 months ago by dsull ★ 7.3k
1
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0
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627
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Comment: Comment: Unaligned rRNA in RNAseq in balb/cj mouse
6 months ago by dsull ★ 7.3k
0
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0
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687
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Comment: Comment: Script for Rstudio
6 months ago by dsull ★ 7.3k
1
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1
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974
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Comment: Comment: Segmentation fault (core dumped)
6 months ago by dsull ★ 7.3k
1
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1
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974
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Comment: Comment: Segmentation fault (core dumped)
6 months ago by dsull ★ 7.3k
1
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1
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1.3k
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Comment: Comment: If changing the RNA-Seq count normalisation method changes the DGE and downstrea
6 months ago by dsull ★ 7.3k
1
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0
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768
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Comment: Comment: Cutadapt&FastQC:sequence length disturbution failed after adapter trimming
7 months ago by dsull ★ 7.3k
528 results • Page 1 of 11
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