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Comment: Comment: 10X V3 library with only one fastq file
6 months ago by dsull ★ 4.8k
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0
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374
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Answer: Answer: Do indexes made with cDNA fasta file contain only mRNAs?
6 months ago by dsull ★ 4.8k
6
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1
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489
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Answer: Answer: Question about aggregating p values from different DE analysis methods for the s
6 months ago by dsull ★ 4.8k
1
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0
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2.4k
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Comment: Comment: Get TPM from RNA counts and gene length?
7 months ago by dsull ★ 4.8k
3
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2
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2.0k
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Comment: Comment: How do one analyze data from SMART-Seq stranded kit (v4)?
7 months ago by dsull ★ 4.8k
1
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0
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2.0k
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Comment: Comment: How do one analyze data from SMART-Seq stranded kit (v4)?
7 months ago by dsull ★ 4.8k
0
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0
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2.0k
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Comment: Comment: How do one analyze data from SMART-Seq stranded kit (v4)?
7 months ago by dsull ★ 4.8k
1
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2
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2.0k
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Answer: Answer: How do one analyze data from SMART-Seq stranded kit (v4)?
7 months ago by dsull ★ 4.8k
1
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0
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2.4k
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Comment: Comment: Get TPM from RNA counts and gene length?
7 months ago by dsull ★ 4.8k
1
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0
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442
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Comment: Comment: How to do differential expression without having replicates
7 months ago by dsull ★ 4.8k
1
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1
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2.2k
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Comment: Comment: Aberrant splicing in bulk RNAseq
7 months ago by dsull ★ 4.8k
1
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1
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2.2k
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Comment: Comment: Aberrant splicing in bulk RNAseq
7 months ago by dsull ★ 4.8k
3
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0
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1.1k
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Comment: Comment: What are Differentially Expressed Genes ?!!
7 months ago by dsull ★ 4.8k
0
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1
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480
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Comment: Comment: How to summarize the expression of a gene when having expression data from diffe
7 months ago by dsull ★ 4.8k
1
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1
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723
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Answer: Answer: Tools/pipeline for analysis of smart-seq3 data
8 months ago by dsull ★ 4.8k
1
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0
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651
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Answer: Answer: Can I add TPM values of Isoforms of the same gene to get total gene expression?
8 months ago by dsull ★ 4.8k
0
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0
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2.2k
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Comment: Comment: What does the fragment length (-l) argument in Kallisto actually do?
8 months ago by dsull ★ 4.8k
0
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0
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2.2k
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Comment: Comment: What does the fragment length (-l) argument in Kallisto actually do?
8 months ago by dsull ★ 4.8k
0
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0
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851
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Comment: Comment: Is it possible to convert transcript-level to gene-level dataset to use it in DE
8 months ago by dsull ★ 4.8k
1
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1
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851
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Answer: Answer: Is it possible to convert transcript-level to gene-level dataset to use it in DE
8 months ago by dsull ★ 4.8k
2
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0
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463
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Answer: Answer: Circular deBuijn Graph
9 months ago by dsull ★ 4.8k
1
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0
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1.1k
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Comment: Comment: How to get transcriptome reference?
9 months ago by dsull ★ 4.8k
1
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0
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1.1k
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Answer: Answer: How to get transcriptome reference?
9 months ago by dsull ★ 4.8k
1
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1
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1.7k
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Comment: Comment: downloading raw scRNA seq data from NCBI
9 months ago by dsull ★ 4.8k
0
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0
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1.7k
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Comment: Comment: downloading raw scRNA seq data from NCBI
9 months ago by dsull ★ 4.8k
0
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0
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1.4k
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Comment: Comment: A Computer Scientist who wants to start Bioinformatics
9 months ago by dsull ★ 4.8k
0
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0
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938
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Comment: Comment: is there any tool for SRA metadata analysis?
9 months ago by dsull ★ 4.8k
0
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1
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1.1k
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Comment: Comment: Issues with chromosome file in kallisto
9 months ago by dsull ★ 4.8k
2
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1
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633
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Answer: Answer: Does the bootstrap in kallisto affect the BAM files?
9 months ago by dsull ★ 4.8k
1
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1
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1.1k
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Answer: Answer: Issues with chromosome file in kallisto
9 months ago by dsull ★ 4.8k
1
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1
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938
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Comment: Comment: is there any tool for SRA metadata analysis?
9 months ago by dsull ★ 4.8k
2
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1
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540
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Answer: Answer: Are ther any bulk RNAseq pipeline recommend which including the downstream funct
9 months ago by dsull ★ 4.8k
1
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0
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704
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Comment: Comment: Sleuth analysis with only using Kallisto abundance.tsv files no HDF5 files
9 months ago by dsull ★ 4.8k
0
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0
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915
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Comment: Comment: FPKM file differentilly gene anaylsis
9 months ago by dsull ★ 4.8k
2
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1
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427
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Answer: Answer: How to use Sleuth for Kallisto results in one directory?
9 months ago by dsull ★ 4.8k
2
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1
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1.6k
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Comment: Comment: Building index with kallisto, keeps getting killed.
9 months ago by dsull ★ 4.8k
2
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1
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1.6k
views
Answer: Answer: Building index with kallisto, keeps getting killed.
9 months ago by dsull ★ 4.8k
1
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1
reply
915
views
Answer: Answer: FPKM file differentilly gene anaylsis
9 months ago by dsull ★ 4.8k
1
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0
replies
547
views
Comment: Comment: Random forest with DE genes
9 months ago by dsull ★ 4.8k
2
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1
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547
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Answer: Answer: Random forest with DE genes
9 months ago by dsull ★ 4.8k
2
votes
0
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365
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Answer: Answer: Understanding how-are-we-stranded-here and salmon parameters
9 months ago by dsull ★ 4.8k
1
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1
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1.5k
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Comment: Comment: Can't convert SRA to FASTQ with fasterq-dump. fasterq-dump was killed (signal 9
10 months ago by dsull ★ 4.8k
0
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1
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522
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Comment: Comment: Tools for strand direction detection RNA-Seq
10 months ago by dsull ★ 4.8k
2
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0
replies
522
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Comment: Comment: Tools for strand direction detection RNA-Seq
10 months ago by dsull ★ 4.8k
0
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1
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2.2k
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Comment: Comment: What does the fragment length (-l) argument in Kallisto actually do?
10 months ago by dsull ★ 4.8k
0
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0
replies
2.2k
views
Comment: Comment: What does the fragment length (-l) argument in Kallisto actually do?
10 months ago by dsull ★ 4.8k
0
votes
0
replies
2.2k
views
Comment: Comment: What does the fragment length (-l) argument in Kallisto actually do?
10 months ago by dsull ★ 4.8k
1
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1
reply
2.2k
views
Comment: Comment: What does the fragment length (-l) argument in Kallisto actually do?
10 months ago by dsull ★ 4.8k
1
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1
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499
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Comment: Comment: Should I skip trimming, and do deseq2 directly if fastqc only shows adapters.
10 months ago by dsull ★ 4.8k
0
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0
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2.3k
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Comment: Comment: How to choose parameters for kallisto single end mode?
11 months ago by dsull ★ 4.8k
488 results • Page 3 of 10
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