User: cristian

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cristian220
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Posts by cristian

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Comment: C: Extract User Defined Region From An Fasta File
... Can you do this with Rsamtools or another Bioconductor packages? ...
written 16 months ago by cristian220
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Answer: A: how to compare 1st row and 1st column value with rest of the row values in R?
... Hi, Can I recommend this course? http://cambiotraining.github.io/r-intro/ ...
written 18 months ago by cristian220
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Comment: C: how to compare 1st row and 1st column value with rest of the row values in R?
... It's also marking the heterozygotes. I think table 2 is as you wish. ...
written 18 months ago by cristian220
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Comment: C: how to compare 1st row and 1st column value with rest of the row values in R?
... The code above is now exporting the 3 columns into a single file. ...
written 18 months ago by cristian220
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Comment: C: how to compare 1st row and 1st column value with rest of the row values in R?
... What does this mean: ' i want to check whether P1 and P2 match for M1 or not' ? Do you only want to export columns where both parents are homozygous? ...
written 18 months ago by cristian220
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Comment: C: how to compare 1st row and 1st column value with rest of the row values in R?
... How do you define 'between them' when the parents are not homozygous or the data not available, M3 and M2 respectively. ...
written 18 months ago by cristian220
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Comment: C: how to compare 1st row and 1st column value with rest of the row values in R?
... Sorry, can you explain the problem more clearly? Do you want to output columns M2 and M3 in the first step? Also, I still haven't sorted out the heterozygote bit. I am on it. ...
written 18 months ago by cristian220
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Comment: C: How to rename chromosome names in GTF file?
... Maybe you can consolidate your comments into an answer and I can accept it? ...
written 18 months ago by cristian220
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Comment: C: How to rename chromosome names in GTF file?
... Correct guess, thanks. It worked now. So you made use of the fact that the GTF file just had 'CHROMOSOME_' prepended to all my FASTA chromosome names, right? Do you mind explaining this: 's/CHROMOSOME_//g' ? ...
written 18 months ago by cristian220
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Comment: C: how to compare 1st row and 1st column value with rest of the row values in R?
... I edited my answer in my first comment. Check it out and tell me where you got. There were mistakes in my first code. For example, when you fetch a column: df[['column name']] the i-th value of that column: df[['column name']][i] There are brackets missing in your blue code. ...
written 18 months ago by cristian220

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