User: cristian
cristian • 230
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Posts by cristian
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... Thanks for your alfred tool. I have computed the mismatch rate and error rates of my long-read alignment. Mismatch rate seems to be number of mismatches / number of aligned bases. How do you define the error rate? I have an error rate of 11.4%. What does that mean? And how do you define the insertio ...
written 3 months ago by
cristian • 230
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... Does cutadapt remove the sequence you put in and its reverse complement (+ to the end of the read) from every string in the fastq file? ...
written 5 months ago by
cristian • 230
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... Can you do this with Rsamtools or another Bioconductor packages? ...
written 22 months ago by
cristian • 230
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... Hi,
Can I recommend this course? http://cambiotraining.github.io/r-intro/ ...
written 24 months ago by
cristian • 230
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... It's also marking the heterozygotes. I think table 2 is as you wish. ...
written 2.0 years ago by
cristian • 230
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... The code above is now exporting the 3 columns into a single file. ...
written 2.0 years ago by
cristian • 230
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... What does this mean: ' i want to check whether P1 and P2 match for M1 or not' ?
Do you only want to export columns where both parents are homozygous? ...
written 2.0 years ago by
cristian • 230
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... How do you define 'between them' when the parents are not homozygous or the data not available, M3 and M2 respectively. ...
written 2.0 years ago by
cristian • 230
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... Sorry, can you explain the problem more clearly? Do you want to output columns M2 and M3 in the first step? Also, I still haven't sorted out the heterozygote bit. I am on it. ...
written 2.0 years ago by
cristian • 230
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... Maybe you can consolidate your comments into an answer and I can accept it? ...
written 2.0 years ago by
cristian • 230
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