User: cristian

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cristian80
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Posts by cristian

<prev • 168 results • page 1 of 17 • next >
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Comment: C: how to compare 1st row and 1st column value with rest of the row values in R?
... It's also marking the heterozygotes. I think table 2 is as you wish. ...
written 3 days ago by cristian80
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Comment: C: how to compare 1st row and 1st column value with rest of the row values in R?
... The code above is now exporting the 3 columns into a single file. ...
written 3 days ago by cristian80
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Comment: C: how to compare 1st row and 1st column value with rest of the row values in R?
... What does this mean: ' i want to check whether P1 and P2 match for M1 or not' ? Do you only want to export columns where both parents are homozygous? ...
written 3 days ago by cristian80
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Comment: C: how to compare 1st row and 1st column value with rest of the row values in R?
... How do you define 'between them' when the parents are not homozygous or the data not available, M3 and M2 respectively. ...
written 3 days ago by cristian80
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Comment: C: how to compare 1st row and 1st column value with rest of the row values in R?
... Sorry, can you explain the problem more clearly? Do you want to output columns M2 and M3 in the first step? Also, I still haven't sorted out the heterozygote bit. I am on it. ...
written 3 days ago by cristian80
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Comment: C: How to rename chromosome names in GTF file?
... Maybe you can consolidate your comments into an answer and I can accept it? ...
written 3 days ago by cristian80
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Comment: C: How to rename chromosome names in GTF file?
... Correct guess, thanks. It worked now. So you made use of the fact that the GTF file just had 'CHROMOSOME_' prepended to all my FASTA chromosome names, right? Do you mind explaining this: 's/CHROMOSOME_//g' ? ...
written 3 days ago by cristian80
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Comment: C: how to compare 1st row and 1st column value with rest of the row values in R?
... I edited my answer in my first comment. Check it out and tell me where you got. There were mistakes in my first code. For example, when you fetch a column: df[['column name']] the i-th value of that column: df[['column name']][i] There are brackets missing in your blue code. ...
written 3 days ago by cristian80
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Comment: C: How to rename chromosome names in GTF file?
... Hi, sed -e 's/CHROMOSOME_//g' celegans.gtf works but the command with the '-i' option gives the following error: sed: 1: "output/genome/celegans/ ...": invalid command code o Does the '-i' mean 'in-place' so changes the file directly? I am going to try to redirect the output of the '-e' ...
written 3 days ago by cristian80
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How to rename chromosome names in GTF file?
... Hi, I have a GTF file with the following head: head celegans.gtf CHROMOSOME_I Coding_transcript exon 4119 4358 . - transcript_id "Transcript:Y74C9A.3.1"; gene_id "Gene:Y74C9A.3"; CHROMOSOME_I Coding_transcript exon 5195 5296 . - transcript_id "Transcript:Y74C9A.3.1"; gene_id "Gene:Y74C ...
gtf fasta annotation genome written 3 days ago by cristian80

Latest awards to cristian

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Scholar 10 days ago, created an answer that has been accepted. For A: Can I open a BAM file without a header in Rsamtools?
Popular Question 19 days ago, created a question with more than 1,000 views. For Problem running Trinity
Scholar 6 weeks ago, created an answer that has been accepted. For A: Can I open a BAM file without a header in Rsamtools?
Teacher 8 weeks ago, created an answer with at least 3 up-votes. For A: Error with hera
Scholar 8 weeks ago, created an answer that has been accepted. For A: Can I open a BAM file without a header in Rsamtools?
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Scholar 12 weeks ago, created an answer that has been accepted. For A: Can I open a BAM file without a header in Rsamtools?
Scholar 12 weeks ago, created an answer that has been accepted. For A: Can I open a BAM file without a header in Rsamtools?
Scholar 3 months ago, created an answer that has been accepted. For A: Can I open a BAM file without a header in Rsamtools?
Scholar 3 months ago, created an answer that has been accepted. For A: Can I open a BAM file without a header in Rsamtools?
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