User: cristian

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cristian240
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Posts by cristian

<prev • 172 results • page 1 of 18 • next >
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Comment: C: Mismatch and Indel statistics from BAM/SAM file
... Thanks for your alfred tool. I have computed the mismatch rate and error rates of my long-read alignment. Mismatch rate seems to be number of mismatches / number of aligned bases. How do you define the error rate? I have an error rate of 11.4%. What does that mean? And how do you define the insertio ...
written 16 months ago by cristian240
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Comment: C: What is the right illumina universal adapter sequence for trimming paired-end re
... Does cutadapt remove the sequence you put in and its reverse complement (+ to the end of the read) from every string in the fastq file? ...
written 18 months ago by cristian240
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Comment: C: Extract User Defined Region From An Fasta File
... Can you do this with Rsamtools or another Bioconductor packages? ...
written 2.9 years ago by cristian240
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Answer: A: how to compare 1st row and 1st column value with rest of the row values in R?
... Hi, Can I recommend this course? http://cambiotraining.github.io/r-intro/ ...
written 3.1 years ago by cristian240
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Comment: C: how to compare 1st row and 1st column value with rest of the row values in R?
... It's also marking the heterozygotes. I think table 2 is as you wish. ...
written 3.1 years ago by cristian240
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Comment: C: how to compare 1st row and 1st column value with rest of the row values in R?
... The code above is now exporting the 3 columns into a single file. ...
written 3.1 years ago by cristian240
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Comment: C: how to compare 1st row and 1st column value with rest of the row values in R?
... What does this mean: ' i want to check whether P1 and P2 match for M1 or not' ? Do you only want to export columns where both parents are homozygous? ...
written 3.1 years ago by cristian240
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Comment: C: how to compare 1st row and 1st column value with rest of the row values in R?
... How do you define 'between them' when the parents are not homozygous or the data not available, M3 and M2 respectively. ...
written 3.1 years ago by cristian240
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Comment: C: how to compare 1st row and 1st column value with rest of the row values in R?
... Sorry, can you explain the problem more clearly? Do you want to output columns M2 and M3 in the first step? Also, I still haven't sorted out the heterozygote bit. I am on it. ...
written 3.1 years ago by cristian240
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Comment: C: How to rename chromosome names in GTF file?
... Maybe you can consolidate your comments into an answer and I can accept it? ...
written 3.1 years ago by cristian240

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