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2
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2
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1.2k
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Answer: Answer: Chipseq visualization how to draw the figure
2.7 years ago by Chirag Nepal ★ 2.4k
4
votes
1
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7.8k
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Answer: A: How to find CpG island shore?
updated 4.3 years ago by 43k • written 9.9 years ago by ★ 2.4k
1
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1
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1.9k
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Answer: A: Identify miRNA from deep RNA sequencing
updated 4.3 years ago by 43k • written 8.3 years ago by ★ 2.4k
1
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0
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5.4k
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Answer: A: FastQC of small rna-seq
updated 4.4 years ago by 43k • written 8.3 years ago by ★ 2.4k
0
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0
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2.3k
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Answer: A: Finding uORFs in non-model organisms
updated 4.4 years ago by 43k • written 8.3 years ago by ★ 2.4k
0
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0
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2.5k
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Answer: A: need to identify CDS (translation) for gene models predicted by Cufflinks and St
updated 4.4 years ago by 43k • written 8.3 years ago by ★ 2.4k
4
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1
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2.9k
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Answer: A: CAGE processing (from BAM to expression values per Gene/Isoform)
updated 4.4 years ago by 43k • written 8.4 years ago by ★ 2.4k
1
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1
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4.6k
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Answer: A: promoter position estimation
updated 4.4 years ago by 43k • written 8.4 years ago by ★ 2.4k
0
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0
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2.2k
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Answer: A: Why there are some genes have a same transcription start position?
updated 4.4 years ago by 43k • written 8.4 years ago by ★ 2.4k
1
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1
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3.2k
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Answer: A: ChIP-seq blacklisted regions (mouse)
updated 4.4 years ago by 43k • written 8.5 years ago by ★ 2.4k
0
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1
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1.9k
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Answer: A: Edit distance between microRNAs
updated 4.6 years ago by 43k • written 9.8 years ago by ★ 2.4k
8
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1
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3.4k
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Answer: A: enhancer RNA counting from RNASeq data
6.2 years ago by Chirag Nepal ★ 2.4k
3
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1
reply
10k
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Answer: A: How to get promoter coordinates of hg19 from UCSC genome browser ?
7.0 years ago by Chirag Nepal ★ 2.4k
1
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0
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1.5k
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Answer: A: Detecting non-exonic conserved regions
7.4 years ago by Chirag Nepal ★ 2.4k
3
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0
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1.5k
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Answer: A: Publishing and research fees
7.4 years ago by Chirag Nepal ★ 2.4k
1
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0
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2.0k
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Answer: A: identification of miRNA for zebrafish genes
7.5 years ago by Chirag Nepal ★ 2.4k
3
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1
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2.0k
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Answer: A: Finding Ultraconserved elements between human and zebrafish
7.6 years ago by Chirag Nepal ★ 2.4k
0
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1
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2.7k
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Answer: A: How to visualize read depth based on genomic location
7.6 years ago by Chirag Nepal ★ 2.4k
1
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0
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1.5k
views
Answer: A: lncRNA annoatation in common crap
7.7 years ago by Chirag Nepal ★ 2.4k
2
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1
reply
6.7k
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Answer: A: Copy Number Variation Steps (CNVs) - detection step by step
7.8 years ago by Chirag Nepal ★ 2.4k
0
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1
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1.4k
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Answer: A: microRNA visulaization data track
8.0 years ago by Chirag Nepal ★ 2.4k
1
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2
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11k
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Answer: A: 3' Bias in RNASEQ data
8.0 years ago by Chirag Nepal ★ 2.4k
0
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0
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3.3k
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Answer: A: I wish to compare one particular gene of the species with that of other species
8.0 years ago by Chirag Nepal ★ 2.4k
6
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0
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3.5k
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Answer: A: help with career decisions: should a PhD in genetics go for another master in bi
8.0 years ago by Chirag Nepal ★ 2.4k
5
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0
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4.8k
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Answer: A: Europe: Non-Paid Bioinformatics Internships/Training
8.0 years ago by Chirag Nepal ★ 2.4k
1
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0
replies
1.5k
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Answer: A: reads from miRNA-seq
8.0 years ago by Chirag Nepal ★ 2.4k
1
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1
reply
1.8k
views
Answer: A: nearby gene and miRNA of non coding RNA
8.0 years ago by Chirag Nepal ★ 2.4k
0
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0
replies
1.7k
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Answer: A: Two UCSC bedgraph tracks next to each other
8.1 years ago by Chirag Nepal ★ 2.4k
1
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1
reply
3.6k
views
Answer: A: Gene Ontology without enrichment analysis
8.1 years ago by Chirag Nepal ★ 2.4k
2
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1
reply
50k
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Answer: A: Visualization of ChIP-seq data using Heatmaps
8.1 years ago by Chirag Nepal ★ 2.4k
1
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0
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2.4k
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Answer: A: CpG island identification
8.1 years ago by Chirag Nepal ★ 2.4k
0
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0
replies
1.8k
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Answer: A: Score bit in multiple BLAST
8.1 years ago by Chirag Nepal ★ 2.4k
2
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2
replies
5.6k
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Answer: A: H3K4Me3 ChIP-Seq signal at promoter
8.4 years ago by Chirag Nepal ★ 2.4k
0
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1
reply
2.9k
views
Answer: A: all the SV type of breakdancer output are ITX is that correct?
8.4 years ago by Chirag Nepal ★ 2.4k
0
votes
1
reply
4.2k
views
Answer: Answer: Copy number variation from BAM and VCF files?
updated 20 months ago by 43k • written 8.5 years ago by ★ 2.4k
0
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0
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1.6k
views
Answer: A: microRNAseq data: is this normal or weird?
8.5 years ago by Chirag Nepal ★ 2.4k
0
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1
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6.3k
views
Answer: Answer: Many overrepresented sequences in RNA-seq data. Should them be trimmed out?
updated 19 months ago by 43k • written 8.6 years ago by ★ 2.4k
0
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0
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6.2k
views
Answer: Answer: BI Journals with at least 3-4 impact factor
updated 2.3 years ago by 43k • written 8.6 years ago by ★ 2.4k
1
vote
1
reply
4.8k
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Answer: Answer: H3K4me3 and H3K27ac double peaks near TSS
updated 19 months ago by 43k • written 8.6 years ago by ★ 2.4k
0
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1
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2.1k
views
Answer: A: Question about mutation spectrum
8.7 years ago by Chirag Nepal ★ 2.4k
0
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0
replies
2.0k
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Answer: A: What is the best human 3'-UTR annotation?
8.7 years ago by Chirag Nepal ★ 2.4k
6
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1
reply
6.1k
views
Answer: Answer: How can CAGE and RNA-Seq data complement each other?
updated 19 months ago by 43k • written 8.7 years ago by ★ 2.4k
4
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1
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7.4k
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Answer: A: How can we make this plot?
8.8 years ago by Chirag Nepal ★ 2.4k
2
votes
2
replies
2.7k
views
Answer: Answer: BedTools options - Overlap exons for various bed files
updated 16 months ago by 43k • written 8.9 years ago by ★ 2.4k
2
votes
0
replies
4.0k
views
Answer: Answer: Can I ignore somatic mutations that are also in dbSNP when analyzing cancer-rela
updated 15 months ago by 43k • written 8.9 years ago by ★ 2.4k
0
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0
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3.9k
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Answer: Answer: any tutorials for structural variants filtering and prioritization
updated 24 months ago by 43k • written 9.0 years ago by ★ 2.4k
2
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0
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4.0k
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Answer: Answer: Chip-seq reads' trimming
updated 22 months ago by 43k • written 9.1 years ago by ★ 2.4k
0
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0
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6.0k
views
Answer: A: Why is the cds start and cds end position the same in some of the known-gene dat
9.2 years ago by Chirag Nepal ★ 2.4k
0
votes
1
reply
5.5k
views
Answer: Answer: Read count per exon per transcript
updated 24 months ago by 43k • written 9.2 years ago by ★ 2.4k
0
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0
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2.5k
views
Answer: Answer: count reference and alllele frequency from exome-seq bam
updated 2.0 years ago by 43k • written 9.2 years ago by ★ 2.4k
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