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6
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1
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1.8k
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Answer: A: What is wrong with NCBI's gff file?
6.2 years ago by Damian Kao 16k
2
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1
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1.2k
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Answer: A: Are there any de novo assemblers which can handle (either) transcriptomic or gen
6.2 years ago by Damian Kao 16k
5
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0
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4.0k
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Answer: A: How can I perform Differential expression analysis with just one control and one
6.2 years ago by Damian Kao 16k
1
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1
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3.3k
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Answer: A: How to get the total genic and intergenic length of a chromosome?
6.5 years ago by Damian Kao 16k
1
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0
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2.0k
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Answer: A: long-range technologies for genome scaffolding
6.5 years ago by Damian Kao 16k
0
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0
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1.3k
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Answer: A: Assemble genomes from different sequencing platforms
6.5 years ago by Damian Kao 16k
0
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1
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2.8k
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Answer: A: KEGG mapping from de novo transcriptome annotation
6.5 years ago by Damian Kao 16k
3
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0
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6.3k
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Answer: A: KEGGREST -- gene list
6.5 years ago by Damian Kao 16k
4
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1
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4.3k
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Answer: A: How to match genes of one file to another but in multiple columns
6.5 years ago by Damian Kao 16k
0
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0
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1.6k
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Answer: A: Learning community for newbies
6.5 years ago by Damian Kao 16k
2
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1
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5.0k
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Answer: A: What is the actual cause of excessive zeroes in single cell RNA-seq data? Is it
7.0 years ago by Damian Kao 16k
0
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1
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1.8k
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Answer: A: bowtie2 malformed sam/bam files
7.1 years ago by Damian Kao 16k
2
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0
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1.4k
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Answer: A: What is "^A" in NR database?
7.9 years ago by Damian Kao 16k
2
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0
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9.2k
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Answer: A: What is a "draft genome assembly"?
7.9 years ago by Damian Kao 16k
8
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2
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43k
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Answer: A: Log2 Ratio or Log2 Fold Change - terminology confusion and which one should I us
7.9 years ago by Damian Kao 16k
14
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2
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16k
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Answer: A: How To Compute Gene Enrichment P-Value? (Significantly More Than Expected)
8.2 years ago by Damian Kao 16k
2
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0
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5.5k
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Answer: A: ASCIIGenome: Text Only Genome Viewer!
8.2 years ago by Damian Kao 16k
2
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1
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2.0k
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Answer: A: Blastx No hit query?
8.2 years ago by Damian Kao 16k
0
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1
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2.0k
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Answer: A: Regular expression problem while trying to interpolate variable as pattern in Py
8.3 years ago by Damian Kao 16k
2
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0
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2.2k
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Answer: A: paired reads (headers) show up in 3 lines of sam file instead of expected 2
8.3 years ago by Damian Kao 16k
2
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0
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5.4k
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Answer: A: [UPDATE] Thrown into a Bioinformatics Position
8.3 years ago by Damian Kao 16k
0
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1
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1.4k
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Answer: A: Appropriate application of RPKM
8.4 years ago by Damian Kao 16k
3
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2
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2.4k
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Answer: A: Python script to trim 3' A nucleotides running slow
8.4 years ago by Damian Kao 16k
2
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0
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4.7k
views
Answer: A: Quantum Bioinformatics ahead?
8.4 years ago by Damian Kao 16k
3
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1
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8.3k
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Answer: A: Full header in blastn out6 format ??
8.4 years ago by Damian Kao 16k
3
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2
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3.6k
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Answer: A: de novo RNA seq, combining left and right reads to create assembly
8.5 years ago by Damian Kao 16k
1
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1
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4.0k
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Answer: A: Retrieve all reactions for a given kegg pathway
8.5 years ago by Damian Kao 16k
2
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2
replies
2.8k
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Answer: A: How would you discover the source of contaminant DNA ?
8.5 years ago by Damian Kao 16k
1
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0
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3.4k
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Answer: A: Validation of OrthoMCL results
8.5 years ago by Damian Kao 16k
18
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10
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18k
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Answer: A: Eukaryotic Genome Annotation in 2016
8.6 years ago by Damian Kao 16k
1
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1
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5.2k
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Answer: A: BLAST Multiple Subject sequences?
8.6 years ago by Damian Kao 16k
1
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0
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1.9k
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Answer: A: Estimating the distribution of small non-coding RNAs among the reads: Which anno
8.6 years ago by Damian Kao 16k
1
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0
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7.9k
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Answer: A: Amzon EC2 for bioinformatics, genomics, NGS analysis
8.6 years ago by Damian Kao 16k
0
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0
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2.0k
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Answer: A: Interproscan did not work for nucleotide
8.6 years ago by Damian Kao 16k
1
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0
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4.5k
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Answer: Answer: RNA-seq normalization and differential expression
updated 2.1 years ago by 44k • written 9.0 years ago by 16k
2
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1
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4.0k
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Answer: A: Distributed (parallel) BLAST. Calculating E-values and other statistics params.
9.0 years ago by Damian Kao 16k
1
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1
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3.9k
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Answer: Answer: Scaffolding with SSPACE returned scaffold the same as initial contigs set
updated 2.1 years ago by 44k • written 9.1 years ago by 16k
0
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1
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2.8k
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Answer: Answer: trying to select some files from a multifasta depending on accession number usin
updated 24 months ago by 44k • written 9.2 years ago by 16k
0
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0
replies
6.3k
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Answer: Answer: Blast raw score calculation
updated 24 months ago by 44k • written 9.2 years ago by 16k
4
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1
reply
7.5k
views
Answer: Answer: Bioinformatics and wet lab science combined
updated 22 months ago by 44k • written 9.3 years ago by 16k
1
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1
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2.0k
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Answer: A: Please clear me about these blastx output!!
9.3 years ago by Damian Kao 16k
2
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0
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1.8k
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Answer: A: Transcriptome analysis principle
9.3 years ago by Damian Kao 16k
1
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1
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2.4k
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Answer: Answer: htseq-count counts all reads as no_feature
updated 22 months ago by 44k • written 9.3 years ago by 16k
1
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1
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3.8k
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Answer: A: Is there any script to select longest ORF instead longest transcript from all as
9.3 years ago by Damian Kao 16k
3
votes
1
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8.0k
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Answer: Answer: Clustering sequence on similarity using percentage identity matrix
updated 22 months ago by 44k • written 9.3 years ago by 16k
3
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1
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3.0k
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Answer: Answer: Why a de novo assembler is not a transcript assembler?
updated 21 months ago by 44k • written 9.3 years ago by 16k
2
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0
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3.2k
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Answer: A: How to deal with the spaces in the sequence names with biopython?
9.4 years ago by Damian Kao 16k
2
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1
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1.8k
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Answer: Answer: Terminology: for genomes you call allels, but on the epigenome you call ____?
updated 20 months ago by 44k • written 9.4 years ago by 16k
1
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1
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2.4k
views
Answer: Answer: Is there a more optimal SAM orientation parsing method?
updated 20 months ago by 44k • written 9.4 years ago by 16k
1
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1
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3.1k
views
Answer: Answer: Behavior of short read assemblers regarding filtering out short contigs
updated 20 months ago by 44k • written 9.4 years ago by 16k
370 results • Page 2 of 8
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