Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
Showing : answers
6
votes
1
reply
1.6k
views
Answer: A: What is wrong with NCBI's gff file?
5.7 years ago by Damian Kao 16k
2
votes
1
reply
1.1k
views
Answer: A: Are there any de novo assemblers which can handle (either) transcriptomic or gen
5.8 years ago by Damian Kao 16k
5
votes
0
replies
3.1k
views
Answer: A: How can I perform Differential expression analysis with just one control and one
5.8 years ago by Damian Kao 16k
1
vote
1
reply
3.0k
views
Answer: A: How to get the total genic and intergenic length of a chromosome?
6.0 years ago by Damian Kao 16k
1
vote
0
replies
1.9k
views
Answer: A: long-range technologies for genome scaffolding
6.1 years ago by Damian Kao 16k
0
votes
0
replies
1.2k
views
Answer: A: Assemble genomes from different sequencing platforms
6.1 years ago by Damian Kao 16k
0
votes
1
reply
2.6k
views
Answer: A: KEGG mapping from de novo transcriptome annotation
6.1 years ago by Damian Kao 16k
3
votes
0
replies
6.1k
views
Answer: A: KEGGREST -- gene list
6.1 years ago by Damian Kao 16k
4
votes
1
reply
3.9k
views
Answer: A: How to match genes of one file to another but in multiple columns
6.1 years ago by Damian Kao 16k
0
votes
0
replies
1.5k
views
Answer: A: Learning community for newbies
6.1 years ago by Damian Kao 16k
2
votes
1
reply
4.5k
views
Answer: A: What is the actual cause of excessive zeroes in single cell RNA-seq data? Is it
6.5 years ago by Damian Kao 16k
0
votes
1
reply
1.7k
views
Answer: A: bowtie2 malformed sam/bam files
6.6 years ago by Damian Kao 16k
2
votes
0
replies
1.3k
views
Answer: A: What is "^A" in NR database?
7.4 years ago by Damian Kao 16k
2
votes
0
replies
8.8k
views
Answer: A: What is a "draft genome assembly"?
7.4 years ago by Damian Kao 16k
8
votes
2
replies
41k
views
Answer: A: Log2 Ratio or Log2 Fold Change - terminology confusion and which one should I us
7.5 years ago by Damian Kao 16k
14
votes
2
replies
15k
views
Answer: A: How To Compute Gene Enrichment P-Value? (Significantly More Than Expected)
7.7 years ago by Damian Kao 16k
2
votes
0
replies
5.1k
views
Answer: A: ASCIIGenome: Text Only Genome Viewer!
7.8 years ago by Damian Kao 16k
2
votes
1
reply
1.9k
views
Answer: A: Blastx No hit query?
7.8 years ago by Damian Kao 16k
0
votes
1
reply
1.9k
views
Answer: A: Regular expression problem while trying to interpolate variable as pattern in Py
7.8 years ago by Damian Kao 16k
2
votes
0
replies
2.1k
views
Answer: A: paired reads (headers) show up in 3 lines of sam file instead of expected 2
7.8 years ago by Damian Kao 16k
2
votes
0
replies
5.1k
views
Answer: A: [UPDATE] Thrown into a Bioinformatics Position
7.9 years ago by Damian Kao 16k
0
votes
1
reply
1.3k
views
Answer: A: Appropriate application of RPKM
7.9 years ago by Damian Kao 16k
3
votes
2
replies
2.2k
views
Answer: A: Python script to trim 3' A nucleotides running slow
8.0 years ago by Damian Kao 16k
2
votes
0
replies
4.5k
views
Answer: A: Quantum Bioinformatics ahead?
8.0 years ago by Damian Kao 16k
3
votes
1
reply
7.8k
views
Answer: A: Full header in blastn out6 format ??
8.0 years ago by Damian Kao 16k
3
votes
2
replies
3.2k
views
Answer: A: de novo RNA seq, combining left and right reads to create assembly
8.0 years ago by Damian Kao 16k
1
vote
1
reply
3.8k
views
Answer: A: Retrieve all reactions for a given kegg pathway
8.0 years ago by Damian Kao 16k
2
votes
2
replies
2.6k
views
Answer: A: How would you discover the source of contaminant DNA ?
8.0 years ago by Damian Kao 16k
1
vote
0
replies
3.2k
views
Answer: A: Validation of OrthoMCL results
8.1 years ago by Damian Kao 16k
18
votes
10
replies
17k
views
Answer: A: Eukaryotic Genome Annotation in 2016
8.1 years ago by Damian Kao 16k
1
vote
1
reply
4.9k
views
Answer: A: BLAST Multiple Subject sequences?
8.1 years ago by Damian Kao 16k
1
vote
0
replies
1.9k
views
Answer: A: Estimating the distribution of small non-coding RNAs among the reads: Which anno
8.1 years ago by Damian Kao 16k
1
vote
0
replies
7.5k
views
Answer: A: Amzon EC2 for bioinformatics, genomics, NGS analysis
8.1 years ago by Damian Kao 16k
0
votes
0
replies
2.0k
views
Answer: A: Interproscan did not work for nucleotide
8.2 years ago by Damian Kao 16k
1
vote
0
replies
4.3k
views
Answer: Answer: RNA-seq normalization and differential expression
updated 20 months ago by 43k • written 8.6 years ago by 16k
2
votes
1
reply
3.6k
views
Answer: A: Distributed (parallel) BLAST. Calculating E-values and other statistics params.
8.6 years ago by Damian Kao 16k
1
vote
1
reply
3.7k
views
Answer: Answer: Scaffolding with SSPACE returned scaffold the same as initial contigs set
updated 19 months ago by 43k • written 8.7 years ago by 16k
0
votes
1
reply
2.6k
views
Answer: Answer: trying to select some files from a multifasta depending on accession number usin
updated 18 months ago by 43k • written 8.8 years ago by 16k
0
votes
0
replies
6.1k
views
Answer: Answer: Blast raw score calculation
updated 18 months ago by 43k • written 8.8 years ago by 16k
4
votes
1
reply
7.1k
views
Answer: Answer: Bioinformatics and wet lab science combined
updated 17 months ago by 43k • written 8.8 years ago by 16k
1
vote
1
reply
1.9k
views
Answer: A: Please clear me about these blastx output!!
8.8 years ago by Damian Kao 16k
2
votes
0
replies
1.7k
views
Answer: A: Transcriptome analysis principle
8.8 years ago by Damian Kao 16k
1
vote
1
reply
2.3k
views
Answer: Answer: htseq-count counts all reads as no_feature
updated 16 months ago by 43k • written 8.9 years ago by 16k
1
vote
1
reply
3.6k
views
Answer: A: Is there any script to select longest ORF instead longest transcript from all as
8.9 years ago by Damian Kao 16k
3
votes
1
reply
7.8k
views
Answer: Answer: Clustering sequence on similarity using percentage identity matrix
updated 16 months ago by 43k • written 8.9 years ago by 16k
3
votes
1
reply
2.8k
views
Answer: Answer: Why a de novo assembler is not a transcript assembler?
updated 16 months ago by 43k • written 8.9 years ago by 16k
2
votes
0
replies
3.1k
views
Answer: A: How to deal with the spaces in the sequence names with biopython?
9.0 years ago by Damian Kao 16k
2
votes
1
reply
1.6k
views
Answer: Answer: Terminology: for genomes you call allels, but on the epigenome you call ____?
updated 15 months ago by 43k • written 9.0 years ago by 16k
1
vote
1
reply
2.3k
views
Answer: Answer: Is there a more optimal SAM orientation parsing method?
updated 15 months ago by 43k • written 9.0 years ago by 16k
1
vote
1
reply
3.0k
views
Answer: Answer: Behavior of short read assemblers regarding filtering out short contigs
updated 15 months ago by 43k • written 9.0 years ago by 16k
370 results • Page 2 of 8
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6