User: jonessara770

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jonessara77070
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Posts by jonessara770

<prev • 45 results • page 1 of 5 • next >
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errors in newCellDataSet Monocle function
... Hi I am newbie in using Monocle. Would you please help me with this error? The author said I should not use as.matrix for sparse matrix but the function will not work otherwise. HSMM <- newCellDataSet(as(expr_matrix, "sparseMatrix"), phenoData = pd1, featureData = fd1, expressionFamily=negbi ...
single cell rna-seq written 28 days ago by jonessara77070
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Answer: C: grabix installation from github
... Ok I unloaded module file gcc-4.9.3 and run 'make' it and it create grabix ...
written 6 weeks ago by jonessara77070
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Comment: C: grabix installation from github
... CentOS6/software/gcc/gcc-4.9.3/bin/gcc ...
written 6 weeks ago by jonessara77070
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Comment: C: grabix installation from github
... Thanks when running make I get this error gcc -Wall -O2 -o grabix grabix_main.cpp grabix.cpp bgzf.c -lstdc++ -lz /tmp/ccPts8pX.s: Assembler messages: /tmp/ccPts8pX.s:21: Error: expecting string instruction after `rep' /tmp/ccPts8pX.s: Assembler messages: /tmp/ccPts8pX.s:1036: ...
written 6 weeks ago by jonessara77070 • updated 6 weeks ago by genomax48k
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grabix installation from github
... Hello, I downloaded grabix from github but dont kow how to make executable or install? Please advice https://github.com/arq5x/grabix Thanks ...
gemini written 6 weeks ago by jonessara77070
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Comment: C: What are the step for germline analysis with CNVKit?
... No, I would like to try some of them and compare the results. XHMM installation is very difficult! ...
written 3 months ago by jonessara77070
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What are the step for germline analysis with CNVKit?
... Hello, I would like to call CNV on germline samples with CNVKit. the documentation for CNV calling from germline is a bit confusing. could you please give me a step by step instruction to run CNVkit on germline WES data? Thanks sara ...
whole exome sequneing written 3 months ago by jonessara77070
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Comment: C: best and easy Germline CNV caller with WES
... Thanks! isn't it difficult to run? ...
written 3 months ago by jonessara77070
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best and easy Germline CNV caller with WES
... Hi all, I would like to check the presence of germline CNV in my samples. I wonder what are the best germline CNV callers using WES data ? Please share your experiances Thanks in advance Sara ...
whole exome seq written 3 months ago by jonessara77070
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counts reads for miRNA mapped againt mirbase
... Hello, I aligned my miRNA-Seq againt mirbase by bowtie. I would like to count the reads aligned to each miRNA. is there any tools specific for this ? Thanks ...
mirna-seq written 3 months ago by jonessara77070

Latest awards to jonessara770

Popular Question 16 days ago, created a question with more than 1,000 views. For ExAC PLI score calculation
Scholar 6 weeks ago, created an answer that has been accepted. For C: grabix installation from github
Popular Question 12 weeks ago, created a question with more than 1,000 views. For How to systematically check if a bam file is truncated
Popular Question 8 months ago, created a question with more than 1,000 views. For ExAC PLI score calculation
Popular Question 8 months ago, created a question with more than 1,000 views. For How to systematically check if a bam file is truncated

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