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1
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2
replies
1.6k
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how to extract human from mature.fa?
RNA-Seq
updated 4.1 years ago by 20 • written 6.2 years ago by ▴ 240
37
votes
11
replies
25k
views
7 follow
How to systematically check if a bam file is truncated
Exomeseq
updated 4.3 years ago by ▴ 430 • written 6.1 years ago by ▴ 240
0
votes
3
replies
4.4k
views
How to modify chr naming in bam file: chr -> just number
RNA-Seq
updated 4.5 years ago by 98k • written 4.5 years ago by ▴ 240
1
vote
6
replies
2.6k
views
Converting TCGA Bam files to fastq: Picard does not work!
wes sequencing
updated 4.6 years ago by • 0 • written 5.9 years ago by ▴ 240
0
votes
1
reply
1.2k
views
Comment: C: How to take reads from WGS fastq files in order to map it with Exome?
4.7 years ago by jonessara770 ▴ 240
2
votes
3
replies
1.2k
views
How to take reads from WGS fastq files in order to map it with Exome?
WGS
4.7 years ago by jonessara770 ▴ 240
0
votes
1
reply
5.3k
views
Comment: C: CNVkit for germline samples
4.7 years ago by jonessara770 ▴ 240
1
vote
1
reply
1.0k
views
my bam file contains both single-end and paired-end. How can I convert bam to fastq so that fastq contains only paired-end reads?
WES
updated 4.7 years ago by 154k • written 4.7 years ago by ▴ 240
0
votes
7
replies
1.2k
views
calculate haloplex coverage
next-gen
updated 4.8 years ago by ★ 1.8k • written 6.2 years ago by ▴ 240
6
votes
1
reply
3.4k
views
download WGS from dbGAP authorized with prefetch tools
wgs dbgap
updated 4.8 years ago by 72k • written 4.8 years ago by ▴ 240
0
votes
1
reply
3.1k
views
Comment: C: How can I download the fasta file of RepeatMasker UCSC table directly?
4.8 years ago by jonessara770 ▴ 240
0
votes
1
reply
3.1k
views
Comment: C: How can I download the fasta file of RepeatMasker UCSC table directly?
4.8 years ago by jonessara770 ▴ 240
1
vote
8
replies
3.1k
views
How can I download the fasta file of RepeatMasker UCSC table directly?
repeat TE Retrotransposable/repeat
4.8 years ago by jonessara770 ▴ 240
0
votes
1
reply
1.5k
views
Comment: C: interpretation of intronic variant detected by WES
4.9 years ago by jonessara770 ▴ 240
1
vote
3
replies
1.5k
views
interpretation of intronic variant detected by WES
WES
4.9 years ago by jonessara770 ▴ 240
0
votes
1
reply
912
views
what is the volumn of data on GDC?
next-gen
updated 5.0 years ago by 85k • written 5.0 years ago by ▴ 240
5
votes
3
replies
2.5k
views
How to take in consideration UMI in WES pipeline?
WES
updated 5.0 years ago by 17k • written 5.0 years ago by ▴ 240
1
vote
1
reply
2.5k
views
errors in newCellDataSet Monocle function
single cell RNA-Seq
updated 5.0 years ago by ▴ 220 • written 5.1 years ago by ▴ 240
0
votes
1
reply
1.1k
views
Answer: C: grabix installation from github
5.2 years ago by jonessara770 ▴ 240
0
votes
1
reply
1.1k
views
Comment: C: grabix installation from github
5.2 years ago by jonessara770 ▴ 240
0
votes
1
reply
1.1k
views
Comment: C: grabix installation from github
updated 5.2 years ago by 129k • written 5.2 years ago by ▴ 240
0
votes
9
replies
1.1k
views
grabix installation from github
gemini
5.2 years ago by jonessara770 ▴ 240
0
votes
1
reply
1.6k
views
Comment: C: What are the step for germline analysis with CNVKit?
5.3 years ago by jonessara770 ▴ 240
2
votes
3
replies
1.6k
views
What are the step for germline analysis with CNVKit?
whole exome sequneing
5.3 years ago by jonessara770 ▴ 240
0
votes
1
reply
2.0k
views
Comment: C: best and easy Germline CNV caller with WES
5.3 years ago by jonessara770 ▴ 240
1
vote
3
replies
2.0k
views
best and easy Germline CNV caller with WES
whole exome seq
5.3 years ago by jonessara770 ▴ 240
0
votes
2
replies
1.9k
views
counts reads for miRNA mapped againt mirbase
mirna-seq
5.3 years ago by jonessara770 ▴ 240
0
votes
1
reply
2.6k
views
Comment: C: Converting TCGA Bam files to fastq: Picard does not work!
5.8 years ago by jonessara770 ▴ 240
0
votes
0
replies
2.6k
views
Comment: C: Converting TCGA Bam files to fastq: Picard does not work!
5.8 years ago by jonessara770 ▴ 240
0
votes
1
reply
3.3k
views
Comment: C: duplicate read names in TCGA raw bam file
6.1 years ago by jonessara770 ▴ 240
1
vote
4
replies
3.3k
views
duplicate read names in TCGA raw bam file
DNASeq
6.1 years ago by jonessara770 ▴ 240
0
votes
2
replies
1.7k
views
How many samples ones need to get a high power with RNA-Seq in paired-design experiment?
RNA-Seq
updated 6.1 years ago by ▴ 300 • written 6.1 years ago by ▴ 240
1
vote
1
reply
1.3k
views
how to convert mirna hsa.gff3 to hsa.gtf?
RNA-Seq
updated 6.1 years ago by 20 • written 6.2 years ago by ▴ 240
1
vote
3
replies
1.2k
views
Tips for miRNA-Seq analysis
RNA-Seq
6.2 years ago by jonessara770 ▴ 240
3
votes
1
reply
1.9k
views
why remove adapter just from 3' of the reads
RNA-Seq
6.2 years ago by jonessara770 ▴ 240
0
votes
0
replies
2.5k
views
Comment: C: Is this a bug of Cutadapt
6.2 years ago by jonessara770 ▴ 240
2
votes
5
replies
4.2k
views
best STAR options for miRNA mapping?
RNA-Seq
updated 6.2 years ago by 13k • written 6.2 years ago by ▴ 240
0
votes
0
replies
4.2k
views
Comment: C: best STAR options for miRNA mapping?
6.2 years ago by jonessara770 ▴ 240
0
votes
0
replies
1.2k
views
Comment: C: calculate haloplex coverage
6.2 years ago by jonessara770 ▴ 240
0
votes
1
reply
1.2k
views
Comment: C: calculate haloplex coverage
6.2 years ago by jonessara770 ▴ 240
0
votes
1
reply
1.2k
views
Comment: C: calculate haloplex coverage
updated 6.2 years ago by 129k • written 6.2 years ago by ▴ 240
0
votes
0
replies
1.1k
views
Threshold for variant detection by Haloplex
Target
6.2 years ago by jonessara770 ▴ 240
10
votes
2
replies
6.7k
views
convert STAR ReadsPerGene.out.tab to Deseq2 count table
RNA-Seq
updated 24 months ago by • 0 • written 6.2 years ago by ▴ 240
3
votes
2
replies
11k
views
ExAC PLI score calculation
DNA-Seq
6.3 years ago by jonessara770 ▴ 240
4
votes
4
replies
1.3k
views
Question about 1000 genome project
dnaseq 1000 Genomes
updated 6.3 years ago by 23k • written 6.3 years ago by ▴ 240
1
vote
1
reply
2.4k
views
annotate bed file with CCDS
DNASeq
updated 6.3 years ago by 35k • written 6.3 years ago by ▴ 240
0
votes
1
reply
1.4k
views
is there any R package to measure the efficiency of different exome capture kits?
DNA-Seq
updated 6.4 years ago by ▴ 600 • written 6.4 years ago by ▴ 240
0
votes
1
reply
4.1k
views
Comment: C: convert hg38 variant calls to hg19
6.4 years ago by jonessara770 ▴ 240
0
votes
1
reply
917
views
what chipseq marker(s) we should use to study the effect of HDAC?
chipseq
updated 6.4 years ago by ★ 4.8k • written 6.4 years ago by ▴ 240
0
votes
0
replies
1.1k
views
How to specify --colsWanted in annovar filter-based annotation?
DNA-seq
6.4 years ago by jonessara770 ▴ 240
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